ISBli26
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Brevibacterium linens | Brevibacterium linens Brevibacterium linens ATCC 19391 |
DNA section
IS Length : 1315 bp
Ends
IR Length : 12/23
IRL : GCCCATAATGGGCCGGAGAATGCGAGTAGAAACCATGCCAAAGAAGAAGT
IRR : GGGCGTGAACCCCTGGAAGTGGACACATCAATGTGTACTATCAGGCGGCA
Comments : Atypical ends for an IS3 family member.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTCAACTGCGAAGA | ATCAGACAGGACCAGCGA | 0 |
DNA sequence
GCCCATAATGGGCCGGAGAATGCGAGTAGAAACCATGCCAAAGAAGAAGTACTCCGATGAGTTCAAAGCCGACGCCGTCGCGCTGTACGAGACTCATCCC
GATATGTCTTATTCCCAAGTCGCGGCCGATCTTGGCATCTCCCGTGGCGCGATCAAGTCGTGGGTGTTCCAAGCGCGGAAGGAAGCTGGCAAGGTGTCCA
CGAGCTCGCCTGATCGGCCCGAGACACCCGAGGAGGAGCTTGCTCGCCTGCGGGTCGAGAACGATTCGTTGCGGGCCGATAAGCGGTCTCTGCGGTCGGA
TGTGGAGCGGCTGGAAGAAGAGCGAGCGATCCTGCGGAAAGCCACGAAATATTTCGCGGCAGAGACGACCTGGTGATCCGTTTCCAGTTCGTTGACGACC
ACCGAAACACCCATGAGGTGAAGCGGATGTGTTCCGTGCTGGGTATCCAGCGCTCAAGCTTTTATAAGTGGTGTGCCTCCCGGCCGGCACGGGCGGCCAG
GCAGGCTGCTGATGATGCTCTGTGCGAGCGGATTGAGCACCACTTCGAATTCTGGGACCACACGTACGGGTACCGACGGATCACGGCCGAACTCGCCGAT
GACCCGCACGTGGACGAGCCGGTCAACCGTAAGCGGGTTGCCCGCCTGATGCGGAACAACGGCATGGTCGGTATCCACTTGCGTAAGCCGAAGACTACGA
CGATCTCGGACCCAGATGCTCAGGTGTTTGCCGACCTGGTCGGCAGGGACTTCTCGGCCGCTGAGTTGGGCACGACCTACGTCGGCGACATCACCTACTT
ACCCTATGGCGATGAGGGGAAGTTCTTGTATTTGGCCACGGTCATCGACTTGTATTCGCGGCGGATCGTGGGCTGGTCGATCGCCGATCACATGCGGTCC
AGTCTCGTCGAGGATGCGTTACAGAATGCAGTAAACAACAGAGAAACACTGGAAGGTGCGATTTTTCACAGCGACCATGGTCGTCAATATACGTCCTCGT
CGTTTCAGGCGATGTGTCGTCGGTTCGGGGTGGTCCAGTCGATGGGCAGGGTCGGGTCGAGTGCTGATAATGCCCTGGCGGAGTCGGTCAACGCGGCGTT
GAAGCGGGAGACGCTGCAAGGAGCGAAGCGGTGGGTCTCGGACCTCGAGTGTCGTCGTGAGGTGTTTCGGTGGTTGGTTCGATACAACTCGAGGCGGAGA
CATTCGAGTCTGGGTTATCGAGCACCGGTTGACTTCGAGGTCGATTACACATTTATGATGGACATTGCCGCCTGATAGTACACATTGATGTGTCCACTTC
CAGGGGTTCACGCCC
GATATGTCTTATTCCCAAGTCGCGGCCGATCTTGGCATCTCCCGTGGCGCGATCAAGTCGTGGGTGTTCCAAGCGCGGAAGGAAGCTGGCAAGGTGTCCA
CGAGCTCGCCTGATCGGCCCGAGACACCCGAGGAGGAGCTTGCTCGCCTGCGGGTCGAGAACGATTCGTTGCGGGCCGATAAGCGGTCTCTGCGGTCGGA
TGTGGAGCGGCTGGAAGAAGAGCGAGCGATCCTGCGGAAAGCCACGAAATATTTCGCGGCAGAGACGACCTGGTGATCCGTTTCCAGTTCGTTGACGACC
ACCGAAACACCCATGAGGTGAAGCGGATGTGTTCCGTGCTGGGTATCCAGCGCTCAAGCTTTTATAAGTGGTGTGCCTCCCGGCCGGCACGGGCGGCCAG
GCAGGCTGCTGATGATGCTCTGTGCGAGCGGATTGAGCACCACTTCGAATTCTGGGACCACACGTACGGGTACCGACGGATCACGGCCGAACTCGCCGAT
GACCCGCACGTGGACGAGCCGGTCAACCGTAAGCGGGTTGCCCGCCTGATGCGGAACAACGGCATGGTCGGTATCCACTTGCGTAAGCCGAAGACTACGA
CGATCTCGGACCCAGATGCTCAGGTGTTTGCCGACCTGGTCGGCAGGGACTTCTCGGCCGCTGAGTTGGGCACGACCTACGTCGGCGACATCACCTACTT
ACCCTATGGCGATGAGGGGAAGTTCTTGTATTTGGCCACGGTCATCGACTTGTATTCGCGGCGGATCGTGGGCTGGTCGATCGCCGATCACATGCGGTCC
AGTCTCGTCGAGGATGCGTTACAGAATGCAGTAAACAACAGAGAAACACTGGAAGGTGCGATTTTTCACAGCGACCATGGTCGTCAATATACGTCCTCGT
CGTTTCAGGCGATGTGTCGTCGGTTCGGGGTGGTCCAGTCGATGGGCAGGGTCGGGTCGAGTGCTGATAATGCCCTGGCGGAGTCGGTCAACGCGGCGTT
GAAGCGGGAGACGCTGCAAGGAGCGAAGCGGTGGGTCTCGGACCTCGAGTGTCGTCGTGAGGTGTTTCGGTGGTTGGTTCGATACAACTCGAGGCGGAGA
CATTCGAGTCTGGGTTATCGAGCACCGGTTGACTTCGAGGTCGATTACACATTTATGATGGACATTGCCGCCTGATAGTACACATTGATGTGTCCACTTC
CAGGGGTTCACGCCC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
342 bp | 113 aa | 35 | 376 | + | No |
Description : First part of the transposase
ORF sequence :
MPKKKYSDEFKADAVALYETHPDMSYSQVAADLGISRGAIKSWVFQARKEAGKVSTSSPDRPETPEEELARLRVENDSLRADKRSLRSDVERLEEERAIL
RKATKYFAAETTW
RKATKYFAAETTW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 330 aa | 283 | 1275 | + | No |
Description : Second part of the transposase
ORF sequence :
AVSAVGCGAAGRRASDPAESHEIFRGRDDLVIRFQFVDDHRNTHEVKRMCSVLGIQRSSFYKWCASRPARAARQAADDALCERIEHHFEFWDHTYGYRRI
TAELADDPHVDEPVNRKRVARLMRNNGMVGIHLRKPKTTTISDPDAQVFADLVGRDFSAAELGTTYVIDLYSRRIVGWSIADHMRSVGDITYLPYGDEGK
FLYLATSLVEDALQNAVNNRETLEGAIFHSDHGRQYTSSSFQAMCRRFGVVQSMGRVGSSADNALAESVNAALKRETLQGAKRWVSDLECRREVFRWLVR
YNSRRRHSSLGYRAPVDFEVDYTFMMDIAA
TAELADDPHVDEPVNRKRVARLMRNNGMVGIHLRKPKTTTISDPDAQVFADLVGRDFSAAELGTTYVIDLYSRRIVGWSIADHMRSVGDITYLPYGDEGK
FLYLATSLVEDALQNAVNNRETLEGAIFHSDHGRQYTSSSFQAMCRRFGVVQSMGRVGSSADNALAESVNAALKRETLQGAKRWVSDLECRREVFRWLVR
YNSRRRHSSLGYRAPVDFEVDYTFMMDIAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1241 bp | 413 aa | 35 | 1275 | + | Yes |
Chemistry : DDE
ORF sequence :
MPKKKYSDEFKADAVALYETHPDMSYSQVAADLGISRGAIKSWVFQARKEAGKVSTSSPDRPETPEEELARLRVENDSLRADKRSLRSDVERLEEERAIL
RKATKYFRGRDDLVIRFQFVDDHRNTHEVKRMCSVLGIQRSSFYKWCASRPARAARQAADDALCERIEHHFEFWDHTYGYRRITAELADDPHVDEPVNRK
RVARLMRNNGMVGIHLRKPKTTTISDPDAQVFADLVGRDFSAAELGTTYVIDLYSRRIVGWSIADHMRSVGDITYLPYGDEGKFLYLATSLVEDALQNAV
NNRETLEGAIFHSDHGRQYTSSSFQAMCRRFGVVQSMGRVGSSADNALAESVNAALKRETLQGAKRWVSDLECRREVFRWLVRYNSRRRHSSLGYRAPVD
FEVDYTFMMDIAA
RKATKYFRGRDDLVIRFQFVDDHRNTHEVKRMCSVLGIQRSSFYKWCASRPARAARQAADDALCERIEHHFEFWDHTYGYRRITAELADDPHVDEPVNRK
RVARLMRNNGMVGIHLRKPKTTTISDPDAQVFADLVGRDFSAAELGTTYVIDLYSRRIVGWSIADHMRSVGDITYLPYGDEGKFLYLATSLVEDALQNAV
NNRETLEGAIFHSDHGRQYTSSSFQAMCRRFGVVQSMGRVGSSADNALAESVNAALKRETLQGAKRWVSDLECRREVFRWLVRYNSRRRHSSLGYRAPVD
FEVDYTFMMDIAA
Blast result :
Comments
ISBli26 is 59% aa similar to IS1206.
The third ORF is the putative ORFAB transposase re constructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase re constructed in silico by possible -1 frameshift.
References
1] Sebastien Levesque (2017) Direct submission.