ISBli24

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Brevibacterium linens
Brevibacterium linens
Brevibacterium linens ATCC 19391
DNA section
IS Length : 1396 bp

Ends


Left end : CCTAATTGCTACTGTGAGTATTGATAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGAACTGACCGTCTCATCGATCATCATGACTCTAATTGCTATTG
Right end : GACGATCCGGTGTATGAAGCGTGCCTTGGCCCGCTCGGTGTATCGGATTCTCGAGGCCACGAACCCGATCGGTCAAGCCGCTTGACAGACATAGAAGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTCTTCGCCACCCTCAACTCCTGACGGGGGCCCAGCAAC0
TCATTACACCCACCAATCCCCCTGACGGCGGCCCAGCAAC0
CGCCATATCCACCAAACACCCCTGACGGCGGCCCAGCAAC0
AGCCTGGACAATGTTCTGACCCTGACGGCGGCTCAGCAAC0

DNA sequence

CCTAATTGCTACTGTGAGTATTGATAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGAACTGACCGTCTCATCGATCATCATGACTCTAATTGCTATTG
ACTCCAACGATGTCCTCGTCGGGATTTGTCTGATGATTGGTGGGCGGTCGGCACCGGCTCGGCCCACATCGATAACTTGATCAGAAGGTTGTCCGTTCCT
GACCGAACGTGACTCATCACAGTAGTGTTTCGACGTGACTATCTCCCGGACCGGAGCCGACCGTTCGACGGTCGGACCTCATCCGTTCCGACACAGGAGA
AGCACGAACCGTCATGACTATCATCTCGCATTTATACGCGTTTGTCGTTGGCGTCGACACCCACGCGAAGAACCACGTCTACAGTGTGCTCACCAAGTCT
GGTGAGCACGTCGATACTGCCACGTTCCCGACGACCAAAGCCGGCATCAAACGAGCCCTGACGTGGGCCGGGCGTCGTACCGGCGGGGACCTTGAGACCC
TGTGGGTGATCGAGGGTATCGGCACGTACGGAGCGATCCTGGCCGATCATGTCGCCGAGGCAGGCTATACGGTCGCCGAGGCCGCGAGCATGAATGCTCG
CGACCGGCATGCCACGGGCAAGGACGACCGGATCGATGCCCGACGGATCGCTGGCGCGGTCCTGTCGATGGATGAGTCGCGGCTGCGGTTTCCCCGGCAG
GCTGATGGGCCGCGTCAGGGACTGCGGATCTTGGTCAAGGCGCGGGAGTCCATGACTCGGGAGAAGACCCGGACGATCAATGCGCTCACTGCGCTGTTGC
GTGGTCAGGACCTCGGTGTCGATGCGCGTCGGAAATTGTCGATGGTCACGATCCAGACGGTGGCGAAGTGGCGGATCAGGGACGAGTCTGTGGCACTGAC
CGAGGCTCGTCGGGAAGCCATCCGGTTAGCCAAACGTGTCGTCGAGCTCGATGCCGAAATCAAGGACTACGCCGCCCGGATCGAGGCCTTGGTCAAGGCC
AGTCCGGGGGCGGTGTTGTTGGCTGAGCCGGGGATTGGTCCGATCACTGCGGCTGTGTTCTACCTGGCGTGGTCGCATCATGGGCGGGTGCGTTCCGAGG
CGGCGTTCGCGAAGTTGGCGGGGGTCTGTCCGATCCCGGCGTCGTCGGGGAATGTGGTGAGGTTCCGGCTGAATCGCAGTGGTGATCGTCGGTTGAATTC
TGCGTTGTACATGGTGGCAGTCACGCGGCTTTCTCACCATAAGAAGTCCCAGGCGTACATGGCTAGACGGCTGAGTGAGGGGAAGACGAAGAAGGAGACG
ATCCGGTGTATGAAGCGTGCCTTGGCCCGCTCGGTGTATCGGATTCTCGAGGCCACGAACCCGATCGGTCAAGCCGCTTGACAGACATAGAAGGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1068 bp355 aa3141381+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTIISHLYAFVVGVDTHAKNHVYSVLTKSGEHVDTATFPTTKAGIKRALTWAGRRTGGDLETLWVIEGIGTYGAILADHVAEAGYTVAEAASMNARDRHA
TGKDDRIDARRIAGAVLSMDESRLRFPRQADGPRQGLRILVKARESMTREKTRTINALTALLRGQDLGVDARRKLSMVTIQTVAKWRIRDESVALTEARR
EAIRLAKRVVELDAEIKDYAARIEALVKASPGAVLLAEPGIGPITAAVFYLAWSHHGRVRSEAAFAKLAGVCPIPASSGNVVRFRLNRSGDRRLNSALYM
VAVTRLSHHKKSQAYMARRLSEGKTKKETIRCMKRALARSVYRILEATNPIGQAA

 

Blast result :
Comments
ISBli24 is 75% aa similar to ISBli31.
ISBli24 is inserted in to a stem-loop sequence.
References
1] Sebastien Levesque (2017) Direct submission.