ISBli24
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Brevibacterium linens | Brevibacterium linens Brevibacterium linens ATCC 19391 |
DNA section
IS Length : 1396 bp
Ends
Left end : CCTAATTGCTACTGTGAGTATTGATAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGAACTGACCGTCTCATCGATCATCATGACTCTAATTGCTATTG
Right end : GACGATCCGGTGTATGAAGCGTGCCTTGGCCCGCTCGGTGTATCGGATTCTCGAGGCCACGAACCCGATCGGTCAAGCCGCTTGACAGACATAGAAGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTCTTCGCCACCCTCAACT | CCTGACGGGGGCCCAGCAAC | 0 | |
TCATTACACCCACCAATCCC | CCTGACGGCGGCCCAGCAAC | 0 | |
CGCCATATCCACCAAACACC | CCTGACGGCGGCCCAGCAAC | 0 | |
AGCCTGGACAATGTTCTGAC | CCTGACGGCGGCTCAGCAAC | 0 |
DNA sequence
CCTAATTGCTACTGTGAGTATTGATAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGAACTGACCGTCTCATCGATCATCATGACTCTAATTGCTATTG
ACTCCAACGATGTCCTCGTCGGGATTTGTCTGATGATTGGTGGGCGGTCGGCACCGGCTCGGCCCACATCGATAACTTGATCAGAAGGTTGTCCGTTCCT
GACCGAACGTGACTCATCACAGTAGTGTTTCGACGTGACTATCTCCCGGACCGGAGCCGACCGTTCGACGGTCGGACCTCATCCGTTCCGACACAGGAGA
AGCACGAACCGTCATGACTATCATCTCGCATTTATACGCGTTTGTCGTTGGCGTCGACACCCACGCGAAGAACCACGTCTACAGTGTGCTCACCAAGTCT
GGTGAGCACGTCGATACTGCCACGTTCCCGACGACCAAAGCCGGCATCAAACGAGCCCTGACGTGGGCCGGGCGTCGTACCGGCGGGGACCTTGAGACCC
TGTGGGTGATCGAGGGTATCGGCACGTACGGAGCGATCCTGGCCGATCATGTCGCCGAGGCAGGCTATACGGTCGCCGAGGCCGCGAGCATGAATGCTCG
CGACCGGCATGCCACGGGCAAGGACGACCGGATCGATGCCCGACGGATCGCTGGCGCGGTCCTGTCGATGGATGAGTCGCGGCTGCGGTTTCCCCGGCAG
GCTGATGGGCCGCGTCAGGGACTGCGGATCTTGGTCAAGGCGCGGGAGTCCATGACTCGGGAGAAGACCCGGACGATCAATGCGCTCACTGCGCTGTTGC
GTGGTCAGGACCTCGGTGTCGATGCGCGTCGGAAATTGTCGATGGTCACGATCCAGACGGTGGCGAAGTGGCGGATCAGGGACGAGTCTGTGGCACTGAC
CGAGGCTCGTCGGGAAGCCATCCGGTTAGCCAAACGTGTCGTCGAGCTCGATGCCGAAATCAAGGACTACGCCGCCCGGATCGAGGCCTTGGTCAAGGCC
AGTCCGGGGGCGGTGTTGTTGGCTGAGCCGGGGATTGGTCCGATCACTGCGGCTGTGTTCTACCTGGCGTGGTCGCATCATGGGCGGGTGCGTTCCGAGG
CGGCGTTCGCGAAGTTGGCGGGGGTCTGTCCGATCCCGGCGTCGTCGGGGAATGTGGTGAGGTTCCGGCTGAATCGCAGTGGTGATCGTCGGTTGAATTC
TGCGTTGTACATGGTGGCAGTCACGCGGCTTTCTCACCATAAGAAGTCCCAGGCGTACATGGCTAGACGGCTGAGTGAGGGGAAGACGAAGAAGGAGACG
ATCCGGTGTATGAAGCGTGCCTTGGCCCGCTCGGTGTATCGGATTCTCGAGGCCACGAACCCGATCGGTCAAGCCGCTTGACAGACATAGAAGGAT
ACTCCAACGATGTCCTCGTCGGGATTTGTCTGATGATTGGTGGGCGGTCGGCACCGGCTCGGCCCACATCGATAACTTGATCAGAAGGTTGTCCGTTCCT
GACCGAACGTGACTCATCACAGTAGTGTTTCGACGTGACTATCTCCCGGACCGGAGCCGACCGTTCGACGGTCGGACCTCATCCGTTCCGACACAGGAGA
AGCACGAACCGTCATGACTATCATCTCGCATTTATACGCGTTTGTCGTTGGCGTCGACACCCACGCGAAGAACCACGTCTACAGTGTGCTCACCAAGTCT
GGTGAGCACGTCGATACTGCCACGTTCCCGACGACCAAAGCCGGCATCAAACGAGCCCTGACGTGGGCCGGGCGTCGTACCGGCGGGGACCTTGAGACCC
TGTGGGTGATCGAGGGTATCGGCACGTACGGAGCGATCCTGGCCGATCATGTCGCCGAGGCAGGCTATACGGTCGCCGAGGCCGCGAGCATGAATGCTCG
CGACCGGCATGCCACGGGCAAGGACGACCGGATCGATGCCCGACGGATCGCTGGCGCGGTCCTGTCGATGGATGAGTCGCGGCTGCGGTTTCCCCGGCAG
GCTGATGGGCCGCGTCAGGGACTGCGGATCTTGGTCAAGGCGCGGGAGTCCATGACTCGGGAGAAGACCCGGACGATCAATGCGCTCACTGCGCTGTTGC
GTGGTCAGGACCTCGGTGTCGATGCGCGTCGGAAATTGTCGATGGTCACGATCCAGACGGTGGCGAAGTGGCGGATCAGGGACGAGTCTGTGGCACTGAC
CGAGGCTCGTCGGGAAGCCATCCGGTTAGCCAAACGTGTCGTCGAGCTCGATGCCGAAATCAAGGACTACGCCGCCCGGATCGAGGCCTTGGTCAAGGCC
AGTCCGGGGGCGGTGTTGTTGGCTGAGCCGGGGATTGGTCCGATCACTGCGGCTGTGTTCTACCTGGCGTGGTCGCATCATGGGCGGGTGCGTTCCGAGG
CGGCGTTCGCGAAGTTGGCGGGGGTCTGTCCGATCCCGGCGTCGTCGGGGAATGTGGTGAGGTTCCGGCTGAATCGCAGTGGTGATCGTCGGTTGAATTC
TGCGTTGTACATGGTGGCAGTCACGCGGCTTTCTCACCATAAGAAGTCCCAGGCGTACATGGCTAGACGGCTGAGTGAGGGGAAGACGAAGAAGGAGACG
ATCCGGTGTATGAAGCGTGCCTTGGCCCGCTCGGTGTATCGGATTCTCGAGGCCACGAACCCGATCGGTCAAGCCGCTTGACAGACATAGAAGGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1068 bp | 355 aa | 314 | 1381 | + | No |
Chemistry : DEDD
ORF sequence :
MTIISHLYAFVVGVDTHAKNHVYSVLTKSGEHVDTATFPTTKAGIKRALTWAGRRTGGDLETLWVIEGIGTYGAILADHVAEAGYTVAEAASMNARDRHA
TGKDDRIDARRIAGAVLSMDESRLRFPRQADGPRQGLRILVKARESMTREKTRTINALTALLRGQDLGVDARRKLSMVTIQTVAKWRIRDESVALTEARR
EAIRLAKRVVELDAEIKDYAARIEALVKASPGAVLLAEPGIGPITAAVFYLAWSHHGRVRSEAAFAKLAGVCPIPASSGNVVRFRLNRSGDRRLNSALYM
VAVTRLSHHKKSQAYMARRLSEGKTKKETIRCMKRALARSVYRILEATNPIGQAA
TGKDDRIDARRIAGAVLSMDESRLRFPRQADGPRQGLRILVKARESMTREKTRTINALTALLRGQDLGVDARRKLSMVTIQTVAKWRIRDESVALTEARR
EAIRLAKRVVELDAEIKDYAARIEALVKASPGAVLLAEPGIGPITAAVFYLAWSHHGRVRSEAAFAKLAGVCPIPASSGNVVRFRLNRSGDRRLNSALYM
VAVTRLSHHKKSQAYMARRLSEGKTKKETIRCMKRALARSVYRILEATNPIGQAA
Blast result :
Comments
ISBli24 is 75% aa similar to ISBli31.
ISBli24 is inserted in to a stem-loop sequence.
ISBli24 is inserted in to a stem-loop sequence.
References
1] Sebastien Levesque (2017) Direct submission.