ISBli23

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Brevibacterium linens
Brevibacterium linens
Brevibacterium linens ATCC 19391
DNA section
IS Length : 1638 bp

Ends


IR Length : 38/50

IRL : TGTGCTGTCTCACTACCTTGCTTACAACCTGTCTCAACACATTGCTGACA
IRR : TGTGGAAACTCGCGACCTTGCTGACAACCTCACTCATTACCTTGCTGACA

Insertion site


Left flankDirect repeatRight flankDR Length
CGGGGGCGCAGCAACCCCGCGCGAGGTTGCTGGGCCCCCGCCAGGTAGCAATAAGC14
CGGCGGCCCAGCAACCTCGCGCGAGGTTGCTGGGCCGCCGTCGGGTAGTAATTCAG14
CGGCGGCCCAGCAACCTCGCGCGAGGTTGCTGGGCCGCCGTCAGGTAGTTCTGGAC14

DNA sequence

TGTGCTGTCTCACTACCTTGCTTACAACCTGTCTCAACACATTGCTGACACCATGTCTCATGACGTTGCTGACACCATGAAGCACACTTCGGGTCATGCC
CGAACCTCTTTCACTGGCCACCCGCCGCGCGATCATCGACTTCGACCCCAACGCATCAGACTCTCCACCGATCACCGAGTTCTGCCGCCACCACGGCATC
ACTCGAACCACGTTCTACGCGATCCGCAAACGCTACAAAACCGAAGGACTCCTGGCACTCCACCCCCACTCATCGGCACCGAAGAACACCGTACGAATCT
ATGACCAGACCACCACCGACCTCGTCCTGAAGATCCGCACCGAACTCGAGTCCACCGGGTGGGATGCCGGCCCGAAATCGATCTGGTTCCACGGAGTCGA
TACCGGTCAGTTCACCGAACCCGTCCCTTCTGTGGCCACGATCGGTCGGATCCTCTCCGACGCTGGGCGAGTGAAAACGAACCCGAAGAAGCGCCCGCGA
TCATCATTGATCCGATTCGTCCGTGCCAACGCCATGGAGATGTGGCAACTCGATGCCTTCGAATACACACTCACCGGCGGTAAGACGAAGATCACGGTGT
ATCAGCTCCTTGATGACTCCACCCGCTTCGACGTCGGCACACAAGCCTTCCACGGCGTGGAAAACAGTGCCGACGCGATCCAGACCATCTCCGCTGCCTT
CACTGACTATGGAGTGCCCCAGGAGCTGTTGACTGACAACGGCAACGCGTTCAACGGCAACCGTCAGGGCTGGGTCGTGACCACTCAACTCTTCCTCGCC
GACCACGGCTGCCGAGGAATCTCCGGCATGCCCGGACACCCGCAAACCCAGGGCAAGAACGAACGTGGCCACCAGACACTGCTGAGAGTCCTCGACGCCA
ACCGTCCCCGCAGTCTTGAGCAAGCGCAGAAGGTGATCGTGGCTTTCCGCGACCGCTACAACAATCGCCGACGGCATCAGGCATTGCCAGGAAATATGAC
TCCGCGACAGGCGTGGGAAGCCGCCGTGCATACTCCCTCAAACGGCACACCGATCCCGCGCACTGAGGTCGAAGCGATCGCACGTGAGTATGCTCAACGC
CGCCGAGTTCAGGCCGCGTTGAACCAACCACTTCCCGATCAGAACAGGTTTGCCGGCGAACCCTTTCCAGAAGCCGCCGATGCAGTGCCAGACCGTGTTG
TGATTGCCGCGGGCAATCCACAGCTCTATGTCCACGCTGTCGGACTCGGAGTACCGAAATCCCTGGTCGGGACCTATCAGTCAGTGGTCACCGAGGACGC
TTACACCTTGTTCGACCCGACCACTGGTGAGGAAGCGGTGTATTTTCCGCTGCCAATTCGCACCGCTGAAACAGTCAGGCGGTATCCGTTGTGGAGAGTC
GTTGGAGCCAGAATGCGTGGAGCTACGAAGACGTGGCTGACGAAACAGCATGACTATCTGCTCAAGCATTTCCCATCCGAGGCACCAGCTGACCGGACCG
TCACGATATGTCACTGAAGAAAAGACAACCCCGCCCAGAGTGTCTGCAACCTAGTGAGTCAGGTTGTCAGCAAGGTAATGAGCGAGGTTGTCAGCAAGGT
AATGAGTGAGGTTGTCAGCAAGGTCGCGAGTTTCCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1422 bp473 aa961517+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPEPLSLATRRAIIDFDPNASDSPPITEFCRHHGITRTTFYAIRKRYKTEGLLALHPHSSAPKNTVRIYDQTTTDLVLKIRTELESTGWDAGPKSIWFHG
VDTGQFTEPVPSVATIGRILSDAGRVKTNPKKRPRSSLIRFVRANAMEMWQLDAFEYTLTGGKTKITVYQLLDDSTRFDVGTQAFHGVENSADAIQTISA
AFTDYGVPQELLTDNGNAFNGNRQGWVVTTQLFLADHGCRGISGMPGHPQTQGKNERGHQTLLRVLDANRPRSLEQAQKVIVAFRDRYNNRRRHQALPGN
MTPRQAWEAAVHTPSNGTPIPRTEVEAIAREYAQRRRVQAALNQPLPDQNRFAGEPFPEAADAVPDRVVIAAGNPQLYVHAVGLGVPKSLVGTYQSVVTE
DAYTLFDPTTGEEAVYFPLPIRTAETVRRYPLWRVVGARMRGATKTWLTKQHDYLLKHFPSEAPADRTVTICH

 

Blast result :
Comments
ISBli23 is 62% aa similar to ISAar22.
References
1] Sebastien Levesque (2017) Direct submission.