ISBli23
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Brevibacterium linens | Brevibacterium linens Brevibacterium linens ATCC 19391 |
DNA section
IS Length : 1638 bp
Ends
IR Length : 38/50
IRL : TGTGCTGTCTCACTACCTTGCTTACAACCTGTCTCAACACATTGCTGACA
IRR : TGTGGAAACTCGCGACCTTGCTGACAACCTCACTCATTACCTTGCTGACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGGGGCGCAGCAACCCCGCG | CGAGGTTGCTGGGC | CCCCGCCAGGTAGCAATAAGC | 14 |
CGGCGGCCCAGCAACCTCGCG | CGAGGTTGCTGGGC | CGCCGTCGGGTAGTAATTCAG | 14 |
CGGCGGCCCAGCAACCTCGCG | CGAGGTTGCTGGGC | CGCCGTCAGGTAGTTCTGGAC | 14 |
DNA sequence
TGTGCTGTCTCACTACCTTGCTTACAACCTGTCTCAACACATTGCTGACACCATGTCTCATGACGTTGCTGACACCATGAAGCACACTTCGGGTCATGCC
CGAACCTCTTTCACTGGCCACCCGCCGCGCGATCATCGACTTCGACCCCAACGCATCAGACTCTCCACCGATCACCGAGTTCTGCCGCCACCACGGCATC
ACTCGAACCACGTTCTACGCGATCCGCAAACGCTACAAAACCGAAGGACTCCTGGCACTCCACCCCCACTCATCGGCACCGAAGAACACCGTACGAATCT
ATGACCAGACCACCACCGACCTCGTCCTGAAGATCCGCACCGAACTCGAGTCCACCGGGTGGGATGCCGGCCCGAAATCGATCTGGTTCCACGGAGTCGA
TACCGGTCAGTTCACCGAACCCGTCCCTTCTGTGGCCACGATCGGTCGGATCCTCTCCGACGCTGGGCGAGTGAAAACGAACCCGAAGAAGCGCCCGCGA
TCATCATTGATCCGATTCGTCCGTGCCAACGCCATGGAGATGTGGCAACTCGATGCCTTCGAATACACACTCACCGGCGGTAAGACGAAGATCACGGTGT
ATCAGCTCCTTGATGACTCCACCCGCTTCGACGTCGGCACACAAGCCTTCCACGGCGTGGAAAACAGTGCCGACGCGATCCAGACCATCTCCGCTGCCTT
CACTGACTATGGAGTGCCCCAGGAGCTGTTGACTGACAACGGCAACGCGTTCAACGGCAACCGTCAGGGCTGGGTCGTGACCACTCAACTCTTCCTCGCC
GACCACGGCTGCCGAGGAATCTCCGGCATGCCCGGACACCCGCAAACCCAGGGCAAGAACGAACGTGGCCACCAGACACTGCTGAGAGTCCTCGACGCCA
ACCGTCCCCGCAGTCTTGAGCAAGCGCAGAAGGTGATCGTGGCTTTCCGCGACCGCTACAACAATCGCCGACGGCATCAGGCATTGCCAGGAAATATGAC
TCCGCGACAGGCGTGGGAAGCCGCCGTGCATACTCCCTCAAACGGCACACCGATCCCGCGCACTGAGGTCGAAGCGATCGCACGTGAGTATGCTCAACGC
CGCCGAGTTCAGGCCGCGTTGAACCAACCACTTCCCGATCAGAACAGGTTTGCCGGCGAACCCTTTCCAGAAGCCGCCGATGCAGTGCCAGACCGTGTTG
TGATTGCCGCGGGCAATCCACAGCTCTATGTCCACGCTGTCGGACTCGGAGTACCGAAATCCCTGGTCGGGACCTATCAGTCAGTGGTCACCGAGGACGC
TTACACCTTGTTCGACCCGACCACTGGTGAGGAAGCGGTGTATTTTCCGCTGCCAATTCGCACCGCTGAAACAGTCAGGCGGTATCCGTTGTGGAGAGTC
GTTGGAGCCAGAATGCGTGGAGCTACGAAGACGTGGCTGACGAAACAGCATGACTATCTGCTCAAGCATTTCCCATCCGAGGCACCAGCTGACCGGACCG
TCACGATATGTCACTGAAGAAAAGACAACCCCGCCCAGAGTGTCTGCAACCTAGTGAGTCAGGTTGTCAGCAAGGTAATGAGCGAGGTTGTCAGCAAGGT
AATGAGTGAGGTTGTCAGCAAGGTCGCGAGTTTCCACA
CGAACCTCTTTCACTGGCCACCCGCCGCGCGATCATCGACTTCGACCCCAACGCATCAGACTCTCCACCGATCACCGAGTTCTGCCGCCACCACGGCATC
ACTCGAACCACGTTCTACGCGATCCGCAAACGCTACAAAACCGAAGGACTCCTGGCACTCCACCCCCACTCATCGGCACCGAAGAACACCGTACGAATCT
ATGACCAGACCACCACCGACCTCGTCCTGAAGATCCGCACCGAACTCGAGTCCACCGGGTGGGATGCCGGCCCGAAATCGATCTGGTTCCACGGAGTCGA
TACCGGTCAGTTCACCGAACCCGTCCCTTCTGTGGCCACGATCGGTCGGATCCTCTCCGACGCTGGGCGAGTGAAAACGAACCCGAAGAAGCGCCCGCGA
TCATCATTGATCCGATTCGTCCGTGCCAACGCCATGGAGATGTGGCAACTCGATGCCTTCGAATACACACTCACCGGCGGTAAGACGAAGATCACGGTGT
ATCAGCTCCTTGATGACTCCACCCGCTTCGACGTCGGCACACAAGCCTTCCACGGCGTGGAAAACAGTGCCGACGCGATCCAGACCATCTCCGCTGCCTT
CACTGACTATGGAGTGCCCCAGGAGCTGTTGACTGACAACGGCAACGCGTTCAACGGCAACCGTCAGGGCTGGGTCGTGACCACTCAACTCTTCCTCGCC
GACCACGGCTGCCGAGGAATCTCCGGCATGCCCGGACACCCGCAAACCCAGGGCAAGAACGAACGTGGCCACCAGACACTGCTGAGAGTCCTCGACGCCA
ACCGTCCCCGCAGTCTTGAGCAAGCGCAGAAGGTGATCGTGGCTTTCCGCGACCGCTACAACAATCGCCGACGGCATCAGGCATTGCCAGGAAATATGAC
TCCGCGACAGGCGTGGGAAGCCGCCGTGCATACTCCCTCAAACGGCACACCGATCCCGCGCACTGAGGTCGAAGCGATCGCACGTGAGTATGCTCAACGC
CGCCGAGTTCAGGCCGCGTTGAACCAACCACTTCCCGATCAGAACAGGTTTGCCGGCGAACCCTTTCCAGAAGCCGCCGATGCAGTGCCAGACCGTGTTG
TGATTGCCGCGGGCAATCCACAGCTCTATGTCCACGCTGTCGGACTCGGAGTACCGAAATCCCTGGTCGGGACCTATCAGTCAGTGGTCACCGAGGACGC
TTACACCTTGTTCGACCCGACCACTGGTGAGGAAGCGGTGTATTTTCCGCTGCCAATTCGCACCGCTGAAACAGTCAGGCGGTATCCGTTGTGGAGAGTC
GTTGGAGCCAGAATGCGTGGAGCTACGAAGACGTGGCTGACGAAACAGCATGACTATCTGCTCAAGCATTTCCCATCCGAGGCACCAGCTGACCGGACCG
TCACGATATGTCACTGAAGAAAAGACAACCCCGCCCAGAGTGTCTGCAACCTAGTGAGTCAGGTTGTCAGCAAGGTAATGAGCGAGGTTGTCAGCAAGGT
AATGAGTGAGGTTGTCAGCAAGGTCGCGAGTTTCCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 96 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MPEPLSLATRRAIIDFDPNASDSPPITEFCRHHGITRTTFYAIRKRYKTEGLLALHPHSSAPKNTVRIYDQTTTDLVLKIRTELESTGWDAGPKSIWFHG
VDTGQFTEPVPSVATIGRILSDAGRVKTNPKKRPRSSLIRFVRANAMEMWQLDAFEYTLTGGKTKITVYQLLDDSTRFDVGTQAFHGVENSADAIQTISA
AFTDYGVPQELLTDNGNAFNGNRQGWVVTTQLFLADHGCRGISGMPGHPQTQGKNERGHQTLLRVLDANRPRSLEQAQKVIVAFRDRYNNRRRHQALPGN
MTPRQAWEAAVHTPSNGTPIPRTEVEAIAREYAQRRRVQAALNQPLPDQNRFAGEPFPEAADAVPDRVVIAAGNPQLYVHAVGLGVPKSLVGTYQSVVTE
DAYTLFDPTTGEEAVYFPLPIRTAETVRRYPLWRVVGARMRGATKTWLTKQHDYLLKHFPSEAPADRTVTICH
VDTGQFTEPVPSVATIGRILSDAGRVKTNPKKRPRSSLIRFVRANAMEMWQLDAFEYTLTGGKTKITVYQLLDDSTRFDVGTQAFHGVENSADAIQTISA
AFTDYGVPQELLTDNGNAFNGNRQGWVVTTQLFLADHGCRGISGMPGHPQTQGKNERGHQTLLRVLDANRPRSLEQAQKVIVAFRDRYNNRRRHQALPGN
MTPRQAWEAAVHTPSNGTPIPRTEVEAIAREYAQRRRVQAALNQPLPDQNRFAGEPFPEAADAVPDRVVIAAGNPQLYVHAVGLGVPKSLVGTYQSVVTE
DAYTLFDPTTGEEAVYFPLPIRTAETVRRYPLWRVVGARMRGATKTWLTKQHDYLLKHFPSEAPADRTVTICH
Blast result :
Comments
ISBli23 is 62% aa similar to ISAar22.
References
1] Sebastien Levesque (2017) Direct submission.