ISPa82
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 2017 bp
Ends
IR Length : 19/25
IRL : GTATGCGCTCCATAGACCCCATATTCAACTGACCTCTCCGTATCCCGGAT
IRR : GTAACCGCTCCATAAACCCCGTCCTGGCGGACGGGTTTTTTCAGGAAGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
A | G | 0 |
DNA sequence
GTATGCGCTCCATAGACCCCATATTCAACTGACCTCTCCGTATCCCGGATGCTGGGCTCCCTATTTTCCCGTGGAGTTCCGTCATGATGCGTCCCGACGC
CAAAGTGCAGAAGGTCTATCTCTACCCAAAGCCCGTCGACTTCCGCAAATCCATCAATGGACTGGCCGCGCTGGTCGAGCTGGACATCAAGGTGGAGGTG
TTCAACCCGGTGCTGTTCGTGTTCCTCAATCGCACGCGCAGCCAGGTCAAGATTCTCTACTGGGAGCGCAATGGCTTCTGCCTGTGGCTCAAGCGACTGG
AAGCCGAGCGTTTCAAGACCAAACCCGATGCCGGTGACGAAGCCATCGAACTGACGGTCGACGAACTGAACTGGCTGCTCGACGGTATCGACCTGTGGCG
TAACCGTCCGCATCAGGTTCTGACGCCGCGTTACGTGGCCTGAGCCGGTATAATCCGGCGCCATGAAATTTGGCGCCGACAACCTTCCCGACGATCCCGT
CCTGCTCAAGGCTCTGATTCTGCAGTTGCAGGAAGAGAACGCCTTGCTGCGCCACAAGCTGTTCTCGCCCAAGTCCGAGCGCAGCCCTGAAGACGCCGAC
TCGCCGCAGTTGGCCATGTTCAACGAGGTCGAAGAGCTGATCGAAGCGGCCGCTGCGCCAAGCGAAGCCGAAGCCGAAGCCAAAGAAGTCGTTGCGCCGG
TCAAGCGCCGTGGCAAACGCAAGCCGCTGCCGGCCAACCTGCCGCGTATGGAGGTCATCCATGAGCTGCCCGAGCACGAGCGCACCTGCGCCTGCGGTTC
CTGCAAGCAGGTGATCGGCGAGGAGACCAGCGAGCAGCTGGAGATCATCCCGATGCAGGTGCGGGTCATCCGCCACATCCGCAAGACCTATGCCTGCAAG
GCCTGTGAAACCGCGCCGGTCACCGCCGATAAACCGGCACAACTGATCGAGAAGAGCCTGGCCAGCCCCAGCGTGCTGGCGATGCTGCTGACCACCAAGT
ACGCCGACGGCATTCCGCTGTACCGCTTCGAAAAGATGCTCAGCCGCCACGGCGTCGACATCCCACGGCAGACCCTGGCGCGTTGGGTGATCCAAAGTGG
CGAGCAACTGCAACCGCTGCTCAACCTGATGCGCGACAAGCTGCTGGACTACCCCGTGCTGCACTGCGACGAAACGCGCTTGCAGGTGCTGCATGAACCG
GGGCGCGACCCCTCGGCACAATCCTGGATGTGGGTGCAAAGCGGTGGGCCGCCGGACAAGCCGGTGATCCTTTTCGACTACACAGCCAGCCGCGCGCAGG
AGGTGCCGCTACGCCTGCTCGATGGCTACCGCGGCTACCTGATGACCGACGACTACGCCGGCTACAACGCCGTGGCTGCACGCGACGGCATCGAACGCCT
GGGCTGCTGGGCGCATGCGCGACGCAAGTTCGTCGAAGCCCAAAAGGTGCAGCCCAAGGGCAAGACTGGGCGTGCCGACGTGGCGCTGAGCCTGATCAAC
AAGCTCTACGGCATCGAGCGTGACCTGAAGGACGCTGACCATAGCGAACGCCTCGACGTCCGCCAGCAACGCAGCCAGCCCCTGATCGACCAACTCAAGG
CCTGGCTGGACAAAACCCAGCCGCAGGTCGCTGGGCAGACGGCCCTGGGCAAGGCGGTAAACTACTTGGCCAGAAACTGGAGCAGGCTGGTGCGCTACAT
CGAAGGCGGGCATCTACCGATCGACAACAACCGCGCCGAGAACGCCATCCGTCCCTTCGTCATCGGCCGCAAGAACTGGCTGTTCAGCGACACGCCGAAA
GGCGCTACCGCCAGCGCGCAGATCTACAGCCTGATCGAAACTGCCAAAGCCAACGGGCAAGAGCCTTACGCCTGGTTGCGCCACATCCTTGAACGCCTGC
CGACTGCCAGTAGCGTCGAGGATTACGAAGCGCTGCTGCCGTGGAACAGCTCGCCAGCTTCTGCCTCTGCTTCCTGAAAAAACCCGTCCGCCAGGACGGG
GTTTATGGAGCGGTTAC
CAAAGTGCAGAAGGTCTATCTCTACCCAAAGCCCGTCGACTTCCGCAAATCCATCAATGGACTGGCCGCGCTGGTCGAGCTGGACATCAAGGTGGAGGTG
TTCAACCCGGTGCTGTTCGTGTTCCTCAATCGCACGCGCAGCCAGGTCAAGATTCTCTACTGGGAGCGCAATGGCTTCTGCCTGTGGCTCAAGCGACTGG
AAGCCGAGCGTTTCAAGACCAAACCCGATGCCGGTGACGAAGCCATCGAACTGACGGTCGACGAACTGAACTGGCTGCTCGACGGTATCGACCTGTGGCG
TAACCGTCCGCATCAGGTTCTGACGCCGCGTTACGTGGCCTGAGCCGGTATAATCCGGCGCCATGAAATTTGGCGCCGACAACCTTCCCGACGATCCCGT
CCTGCTCAAGGCTCTGATTCTGCAGTTGCAGGAAGAGAACGCCTTGCTGCGCCACAAGCTGTTCTCGCCCAAGTCCGAGCGCAGCCCTGAAGACGCCGAC
TCGCCGCAGTTGGCCATGTTCAACGAGGTCGAAGAGCTGATCGAAGCGGCCGCTGCGCCAAGCGAAGCCGAAGCCGAAGCCAAAGAAGTCGTTGCGCCGG
TCAAGCGCCGTGGCAAACGCAAGCCGCTGCCGGCCAACCTGCCGCGTATGGAGGTCATCCATGAGCTGCCCGAGCACGAGCGCACCTGCGCCTGCGGTTC
CTGCAAGCAGGTGATCGGCGAGGAGACCAGCGAGCAGCTGGAGATCATCCCGATGCAGGTGCGGGTCATCCGCCACATCCGCAAGACCTATGCCTGCAAG
GCCTGTGAAACCGCGCCGGTCACCGCCGATAAACCGGCACAACTGATCGAGAAGAGCCTGGCCAGCCCCAGCGTGCTGGCGATGCTGCTGACCACCAAGT
ACGCCGACGGCATTCCGCTGTACCGCTTCGAAAAGATGCTCAGCCGCCACGGCGTCGACATCCCACGGCAGACCCTGGCGCGTTGGGTGATCCAAAGTGG
CGAGCAACTGCAACCGCTGCTCAACCTGATGCGCGACAAGCTGCTGGACTACCCCGTGCTGCACTGCGACGAAACGCGCTTGCAGGTGCTGCATGAACCG
GGGCGCGACCCCTCGGCACAATCCTGGATGTGGGTGCAAAGCGGTGGGCCGCCGGACAAGCCGGTGATCCTTTTCGACTACACAGCCAGCCGCGCGCAGG
AGGTGCCGCTACGCCTGCTCGATGGCTACCGCGGCTACCTGATGACCGACGACTACGCCGGCTACAACGCCGTGGCTGCACGCGACGGCATCGAACGCCT
GGGCTGCTGGGCGCATGCGCGACGCAAGTTCGTCGAAGCCCAAAAGGTGCAGCCCAAGGGCAAGACTGGGCGTGCCGACGTGGCGCTGAGCCTGATCAAC
AAGCTCTACGGCATCGAGCGTGACCTGAAGGACGCTGACCATAGCGAACGCCTCGACGTCCGCCAGCAACGCAGCCAGCCCCTGATCGACCAACTCAAGG
CCTGGCTGGACAAAACCCAGCCGCAGGTCGCTGGGCAGACGGCCCTGGGCAAGGCGGTAAACTACTTGGCCAGAAACTGGAGCAGGCTGGTGCGCTACAT
CGAAGGCGGGCATCTACCGATCGACAACAACCGCGCCGAGAACGCCATCCGTCCCTTCGTCATCGGCCGCAAGAACTGGCTGTTCAGCGACACGCCGAAA
GGCGCTACCGCCAGCGCGCAGATCTACAGCCTGATCGAAACTGCCAAAGCCAACGGGCAAGAGCCTTACGCCTGGTTGCGCCACATCCTTGAACGCCTGC
CGACTGCCAGTAGCGTCGAGGATTACGAAGCGCTGCTGCCGTGGAACAGCTCGCCAGCTTCTGCCTCTGCTTCCTGAAAAAACCCGTCCGCCAGGACGGG
GTTTATGGAGCGGTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
360 bp | 119 aa | 84 | 443 | + | No |
AG : IS66 TnpA
ORF sequence :
MMRPDAKVQKVYLYPKPVDFRKSINGLAALVELDIKVEVFNPVLFVFLNRTRSQVKILYWERNGFCLWLKRLEAERFKTKPDAGDEAIELTVDELNWLLD
GIDLWRNRPHQVLTPRYVA
GIDLWRNRPHQVLTPRYVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 463 | 1977 | + | No |
Chemistry : DDE
ORF sequence :
MKFGADNLPDDPVLLKALILQLQEENALLRHKLFSPKSERSPEDADSPQLAMFNEVEELIEAAAAPSEAEAEAKEVVAPVKRRGKRKPLPANLPRMEVIH
ELPEHERTCACGSCKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLYRFEKMLSRHGVDI
PRQTLARWVIQSGEQLQPLLNLMRDKLLDYPVLHCDETRLQVLHEPGRDPSAQSWMWVQSGGPPDKPVILFDYTASRAQEVPLRLLDGYRGYLMTDDYAG
YNAVAARDGIERLGCWAHARRKFVEAQKVQPKGKTGRADVALSLINKLYGIERDLKDADHSERLDVRQQRSQPLIDQLKAWLDKTQPQVAGQTALGKAVN
YLARNWSRLVRYIEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGQEPYAWLRHILERLPTASSVEDYEALLPWNSSPAS
ASAS
ELPEHERTCACGSCKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLYRFEKMLSRHGVDI
PRQTLARWVIQSGEQLQPLLNLMRDKLLDYPVLHCDETRLQVLHEPGRDPSAQSWMWVQSGGPPDKPVILFDYTASRAQEVPLRLLDGYRGYLMTDDYAG
YNAVAARDGIERLGCWAHARRKFVEAQKVQPKGKTGRADVALSLINKLYGIERDLKDADHSERLDVRQQRSQPLIDQLKAWLDKTQPQVAGQTALGKAVN
YLARNWSRLVRYIEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGQEPYAWLRHILERLPTASSVEDYEALLPWNSSPAS
ASAS
Blast result :
Comments
ISPa82 is 84% (ORF2 : the transposase) aa similar to ISPpu13.
References
1] Dongsheng Zhou (2018) Direct submission.