ISPa81

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MF144194 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 1160 p1160-VIM
Pseudomonas fluorescens PC24 pPHE24
DNA section
IS Length : 1388 bp

Ends


Left end : ACGCATTGGACGGGTAGCGCACGCCTCGCGGCGGCCCTATACTCGACACTGTACAGATAGCCAGCAATCCAATGCTCAGACGCCAAGCCTACAAATTCCG II struct. : Yes
Right end : CCGCCGAAGCGAAGAAGCTGCATTCGCAGCCTAGCGCCGTAGGAATCCCCGGCCTTGCGGCAGCTCTGTGAGCGAAGCGAGAGGCTGGAGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTGGTGGGCTTTCTACGGTTGTTGATCAA

DNA sequence

ACGCATTGGACGGGTAGCGCACGCCTCGCGGCGGCCCTATACTCGACACTGTACAGATAGCCAGCAATCCAATGCTCAGACGCCAAGCCTACAAATTCCG
CATCGAACCAACCGGCGAGCAGCAGCGTAAGCTGCGGCAGTTCGCAGGGGCGTGCCGATTCGTTTTCAACAAGGCGCTGGCGGTGCAGCAAGTCAACCGC
GAAGAAGGCGGCAAGTACATCGGCTATGTGGCCATGGCCAAATATCTCACCGCCTGGCGCAACGGCGATGAAACGCCTTGGCTGAAGGATGCCCCGGTGC
ATCCCTTGCAGCATGCGCTCAAAGACCTCGACCGGGCCTATCAGAACTTCTTCGCCCAGCGGGCCGACTTTCCCCGCTTCAAGAAACGCGGTCAGCGCGA
TAGCTTCCGCTACCCCGATCCCAAACAGATCAAGCTCGACCAGGGAAATTCACGCATCAACCTGCCCAAGCTGGGCTGGCTGCGCTATCGCAACAGCAGG
CAGGTGCTGGGCACGGTGAAGAACGTCAGCGTGAGCCTCAGCGCCGGGCACTGGTGCGTTTCGATCCAGACCGAGCGCGAGGTAGATGTACAGCGGCACT
CCTCCCCGCTGGCGGTCGGCATCGATCTAGGCGTGGTGCGTTTTGCGACACTTTGGGATGGTCGACAGGAAACAGTGTTGCAACCGCTCAACAGCTTCAA
ACGGCATCAGCACCGGCTGGCAAAGGCCCAGCGGCAGATGAGCCATAAGACCAAATTCAGCAACAATTGGAAGAAGGCCAAGGCTCGCGTCCAGCGCATT
AACCGTCAGATCGCCGACGCCCGAAACGACTACCTGCATAAGGCGACTCACGCCATCAGCCAAAGCCACGCGCTGGTGTGTGTCGAAGACTTGAAGGTAG
GCAACATGAGCCGTTCGGCCAAGGGCACCGTCGAGCAGCCAGGGCAGAGCGTCCGGCAGAAGTCGGGGCTCAACCGCGCGATCCTAGATCAGGGGTGGGG
AGAATTCCGCCGTCAGCTCGACTACAAGGCCCAGTGGGCCGGTGGTTGGCTGGTAGCGGTGCCACCGCAGCAAACCAGCCAGCAGTGCCCCGAGTGCGGA
CATACCCATGCGGGCAATCGACAGACTCAGGCACTGTTTCTCTGCTTGGCTTGCGGCCACTCTGACAACGCCGACCGAGTAGGCTCCAGGAACATCCGTG
AGCGCGGATTGAAAACGCTCGAAGGGCAGGGCCATGCCCCGATCGCCTGTGAAGTGAACGGCGCTGTATGGCCGTCAGCAGCAGGAACCCGCCGAAGCGA
AGAAGCTGCATTCGCAGCCTAGCGCCGTAGGAATCCCCGGCCTTGCGGCAGCTCTGTGAGCGAAGCGAGAGGCTGGAGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa721322+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLRRQAYKFRIEPTGEQQRKLRQFAGACRFVFNKALAVQQVNREEGGKYIGYVAMAKYLTAWRNGDETPWLKDAPVHPLQHALKDLDRAYQNFFAQRADF
PRFKKRGQRDSFRYPDPKQIKLDQGNSRINLPKLGWLRYRNSRQVLGTVKNVSVSLSAGHWCVSIQTEREVDVQRHSSPLAVGIDLGVVRFATLWDGRQE
TVLQPLNSFKRHQHRLAKAQRQMSHKTKFSNNWKKAKARVQRINRQIADARNDYLHKATHAISQSHALVCVEDLKVGNMSRSAKGTVEQPGQSVRQKSGL
NRAILDQGWGEFRRQLDYKAQWAGGWLVAVPPQQTSQQCPECGHTHAGNRQTQALFLCLACGHSDNADRVGSRNIRERGLKTLEGQGHAPIACEVNGAVW
PSAAGTRRSEEAAFAA

 

Blast result :
Comments
ISPa81 is 75% aa similar to ISAba30.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.