ISPa81
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF144194 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 1160 p1160-VIM Pseudomonas fluorescens PC24 pPHE24 |
DNA section
IS Length : 1388 bp
Ends
Left end : ACGCATTGGACGGGTAGCGCACGCCTCGCGGCGGCCCTATACTCGACACTGTACAGATAGCCAGCAATCCAATGCTCAGACGCCAAGCCTACAAATTCCG II struct. : Yes
Right end : CCGCCGAAGCGAAGAAGCTGCATTCGCAGCCTAGCGCCGTAGGAATCCCCGGCCTTGCGGCAGCTCTGTGAGCGAAGCGAGAGGCTGGAGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTGGTGGGCT | TTCT | ACGGTTGTTGA | TCAA |
DNA sequence
ACGCATTGGACGGGTAGCGCACGCCTCGCGGCGGCCCTATACTCGACACTGTACAGATAGCCAGCAATCCAATGCTCAGACGCCAAGCCTACAAATTCCG
CATCGAACCAACCGGCGAGCAGCAGCGTAAGCTGCGGCAGTTCGCAGGGGCGTGCCGATTCGTTTTCAACAAGGCGCTGGCGGTGCAGCAAGTCAACCGC
GAAGAAGGCGGCAAGTACATCGGCTATGTGGCCATGGCCAAATATCTCACCGCCTGGCGCAACGGCGATGAAACGCCTTGGCTGAAGGATGCCCCGGTGC
ATCCCTTGCAGCATGCGCTCAAAGACCTCGACCGGGCCTATCAGAACTTCTTCGCCCAGCGGGCCGACTTTCCCCGCTTCAAGAAACGCGGTCAGCGCGA
TAGCTTCCGCTACCCCGATCCCAAACAGATCAAGCTCGACCAGGGAAATTCACGCATCAACCTGCCCAAGCTGGGCTGGCTGCGCTATCGCAACAGCAGG
CAGGTGCTGGGCACGGTGAAGAACGTCAGCGTGAGCCTCAGCGCCGGGCACTGGTGCGTTTCGATCCAGACCGAGCGCGAGGTAGATGTACAGCGGCACT
CCTCCCCGCTGGCGGTCGGCATCGATCTAGGCGTGGTGCGTTTTGCGACACTTTGGGATGGTCGACAGGAAACAGTGTTGCAACCGCTCAACAGCTTCAA
ACGGCATCAGCACCGGCTGGCAAAGGCCCAGCGGCAGATGAGCCATAAGACCAAATTCAGCAACAATTGGAAGAAGGCCAAGGCTCGCGTCCAGCGCATT
AACCGTCAGATCGCCGACGCCCGAAACGACTACCTGCATAAGGCGACTCACGCCATCAGCCAAAGCCACGCGCTGGTGTGTGTCGAAGACTTGAAGGTAG
GCAACATGAGCCGTTCGGCCAAGGGCACCGTCGAGCAGCCAGGGCAGAGCGTCCGGCAGAAGTCGGGGCTCAACCGCGCGATCCTAGATCAGGGGTGGGG
AGAATTCCGCCGTCAGCTCGACTACAAGGCCCAGTGGGCCGGTGGTTGGCTGGTAGCGGTGCCACCGCAGCAAACCAGCCAGCAGTGCCCCGAGTGCGGA
CATACCCATGCGGGCAATCGACAGACTCAGGCACTGTTTCTCTGCTTGGCTTGCGGCCACTCTGACAACGCCGACCGAGTAGGCTCCAGGAACATCCGTG
AGCGCGGATTGAAAACGCTCGAAGGGCAGGGCCATGCCCCGATCGCCTGTGAAGTGAACGGCGCTGTATGGCCGTCAGCAGCAGGAACCCGCCGAAGCGA
AGAAGCTGCATTCGCAGCCTAGCGCCGTAGGAATCCCCGGCCTTGCGGCAGCTCTGTGAGCGAAGCGAGAGGCTGGAGAGGATGTCAA
CATCGAACCAACCGGCGAGCAGCAGCGTAAGCTGCGGCAGTTCGCAGGGGCGTGCCGATTCGTTTTCAACAAGGCGCTGGCGGTGCAGCAAGTCAACCGC
GAAGAAGGCGGCAAGTACATCGGCTATGTGGCCATGGCCAAATATCTCACCGCCTGGCGCAACGGCGATGAAACGCCTTGGCTGAAGGATGCCCCGGTGC
ATCCCTTGCAGCATGCGCTCAAAGACCTCGACCGGGCCTATCAGAACTTCTTCGCCCAGCGGGCCGACTTTCCCCGCTTCAAGAAACGCGGTCAGCGCGA
TAGCTTCCGCTACCCCGATCCCAAACAGATCAAGCTCGACCAGGGAAATTCACGCATCAACCTGCCCAAGCTGGGCTGGCTGCGCTATCGCAACAGCAGG
CAGGTGCTGGGCACGGTGAAGAACGTCAGCGTGAGCCTCAGCGCCGGGCACTGGTGCGTTTCGATCCAGACCGAGCGCGAGGTAGATGTACAGCGGCACT
CCTCCCCGCTGGCGGTCGGCATCGATCTAGGCGTGGTGCGTTTTGCGACACTTTGGGATGGTCGACAGGAAACAGTGTTGCAACCGCTCAACAGCTTCAA
ACGGCATCAGCACCGGCTGGCAAAGGCCCAGCGGCAGATGAGCCATAAGACCAAATTCAGCAACAATTGGAAGAAGGCCAAGGCTCGCGTCCAGCGCATT
AACCGTCAGATCGCCGACGCCCGAAACGACTACCTGCATAAGGCGACTCACGCCATCAGCCAAAGCCACGCGCTGGTGTGTGTCGAAGACTTGAAGGTAG
GCAACATGAGCCGTTCGGCCAAGGGCACCGTCGAGCAGCCAGGGCAGAGCGTCCGGCAGAAGTCGGGGCTCAACCGCGCGATCCTAGATCAGGGGTGGGG
AGAATTCCGCCGTCAGCTCGACTACAAGGCCCAGTGGGCCGGTGGTTGGCTGGTAGCGGTGCCACCGCAGCAAACCAGCCAGCAGTGCCCCGAGTGCGGA
CATACCCATGCGGGCAATCGACAGACTCAGGCACTGTTTCTCTGCTTGGCTTGCGGCCACTCTGACAACGCCGACCGAGTAGGCTCCAGGAACATCCGTG
AGCGCGGATTGAAAACGCTCGAAGGGCAGGGCCATGCCCCGATCGCCTGTGAAGTGAACGGCGCTGTATGGCCGTCAGCAGCAGGAACCCGCCGAAGCGA
AGAAGCTGCATTCGCAGCCTAGCGCCGTAGGAATCCCCGGCCTTGCGGCAGCTCTGTGAGCGAAGCGAGAGGCTGGAGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 72 | 1322 | + | No |
AG : TnpB
ORF sequence :
MLRRQAYKFRIEPTGEQQRKLRQFAGACRFVFNKALAVQQVNREEGGKYIGYVAMAKYLTAWRNGDETPWLKDAPVHPLQHALKDLDRAYQNFFAQRADF
PRFKKRGQRDSFRYPDPKQIKLDQGNSRINLPKLGWLRYRNSRQVLGTVKNVSVSLSAGHWCVSIQTEREVDVQRHSSPLAVGIDLGVVRFATLWDGRQE
TVLQPLNSFKRHQHRLAKAQRQMSHKTKFSNNWKKAKARVQRINRQIADARNDYLHKATHAISQSHALVCVEDLKVGNMSRSAKGTVEQPGQSVRQKSGL
NRAILDQGWGEFRRQLDYKAQWAGGWLVAVPPQQTSQQCPECGHTHAGNRQTQALFLCLACGHSDNADRVGSRNIRERGLKTLEGQGHAPIACEVNGAVW
PSAAGTRRSEEAAFAA
PRFKKRGQRDSFRYPDPKQIKLDQGNSRINLPKLGWLRYRNSRQVLGTVKNVSVSLSAGHWCVSIQTEREVDVQRHSSPLAVGIDLGVVRFATLWDGRQE
TVLQPLNSFKRHQHRLAKAQRQMSHKTKFSNNWKKAKARVQRINRQIADARNDYLHKATHAISQSHALVCVEDLKVGNMSRSAKGTVEQPGQSVRQKSGL
NRAILDQGWGEFRRQLDYKAQWAGGWLVAVPPQQTSQQCPECGHTHAGNRQTQALFLCLACGHSDNADRVGSRNIRERGLKTLEGQGHAPIACEVNGAVW
PSAAGTRRSEEAAFAA
Blast result :
Comments
ISPa81 is 75% aa similar to ISAba30.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.