ISPa80
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF144194 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 1160 p1160-VIM Pseudomonas rhodesiae BS2777 |
DNA section
IS Length : 1172 bp
Ends
Left end : CAGTCGGGCCGTAAAAACCCGTCATTCTTGGCGGGGATATAAGACCCATCGCGCAGCGGCCCTTGGGTTATTCCGATTTTGTGGCACGTTATTGCCATGA II struct. : Yes
Right end : CTCACGACCGCGACGTGAACGCGGCCAGGAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGCTTAGGCCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TAAAAAGGGCCGCT | TTAT | GCGGCCCTTC | TCAA |
DNA sequence
CAGTCGGGCCGTAAAAACCCGTCATTCTTGGCGGGGATATAAGACCCATCGCGCAGCGGCCCTTGGGTTATTCCGATTTTGTGGCACGTTATTGCCATGA
AGCACACCAAGACCCTCCAAGTTCGCGTTCGAGACAAGCATGCGCCGCTGCTGCGGCAGATGGCGCGCAGCGTGAATTTCGTCTGGAACTACCTGAATGA
ACTCAGCCATCGCTCAATCCGTGAGCGTGGGGTGTTTCTGTCTGCCTTTGATCTGCATCCGTACAGCAAGGGAGCAGGTAAGGAACTTGGCCTGCATAGC
CAAACGCTGCAATGTGTCGCGGCTGAATACGTCACCCGGCGCAAGCAGTATCGCAAGGCGAGGCTGAACTGGCGCAAGTCTGGTGGTGCACGGCGGTCGC
TCGGGTGGGTGCCGTTCAACACCGCGGCTGCCAGTTGGAAGAATGGCCAGATCTACCACAACGGGTACTATTTCAAGGTCTGGGACAGCTACGGGCTGGG
CCAGTACCGCTTCCGTTCCGGCAGCTTCAGCGAAGACGCTCGAGGCCGCTGGTATTTCAATGTCGTCGTCGAGCTGGATACCCAGCTATCAGCGGGGCAA
GGGGCAGTTGGCATCGACCTGGGCCTGAAGGACGTGGCCACCTGTAGCGACGGGCAGCGACTGGAGAACGGCCGTTTCTACCGCGACCTGGAGCCCAGGC
TGGCGAAAGCCCAGCGTGCCGGCAAGAAGGCTCGTGTGCGGGCCATCCACGCGAAGATCGCCAATCGGCGCAAGGATGCCTTGCACAAATTCAGCCGCTC
GCTGGTCGAGCGCTGCAACATGATCATCGTGGGCGATGTCAGCCCGCAGAAACTCGTCAGAACCACCATGGCCAAGTCGGTGCTCGATGCCGGCTGGGGT
CAACTGAAAACGATGCTGGCCTACAAATGCGCGCACGCAGGCATCGTCTTCAGGGTAGTGAACGAGGCGTACACCACCCAAACCTGTAGCTGTTGCGGTG
CATTGCCCGACAGCAGGCCGAGAGGTATCGCAGGGCTTGGAATAAGAGAATGGATCTGTGAGTGCGGTGTCACTCACGACCGCGACGTGAACGCGGCCAG
GAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGCTTAGGCCGGGGAGGATGTCAA
AGCACACCAAGACCCTCCAAGTTCGCGTTCGAGACAAGCATGCGCCGCTGCTGCGGCAGATGGCGCGCAGCGTGAATTTCGTCTGGAACTACCTGAATGA
ACTCAGCCATCGCTCAATCCGTGAGCGTGGGGTGTTTCTGTCTGCCTTTGATCTGCATCCGTACAGCAAGGGAGCAGGTAAGGAACTTGGCCTGCATAGC
CAAACGCTGCAATGTGTCGCGGCTGAATACGTCACCCGGCGCAAGCAGTATCGCAAGGCGAGGCTGAACTGGCGCAAGTCTGGTGGTGCACGGCGGTCGC
TCGGGTGGGTGCCGTTCAACACCGCGGCTGCCAGTTGGAAGAATGGCCAGATCTACCACAACGGGTACTATTTCAAGGTCTGGGACAGCTACGGGCTGGG
CCAGTACCGCTTCCGTTCCGGCAGCTTCAGCGAAGACGCTCGAGGCCGCTGGTATTTCAATGTCGTCGTCGAGCTGGATACCCAGCTATCAGCGGGGCAA
GGGGCAGTTGGCATCGACCTGGGCCTGAAGGACGTGGCCACCTGTAGCGACGGGCAGCGACTGGAGAACGGCCGTTTCTACCGCGACCTGGAGCCCAGGC
TGGCGAAAGCCCAGCGTGCCGGCAAGAAGGCTCGTGTGCGGGCCATCCACGCGAAGATCGCCAATCGGCGCAAGGATGCCTTGCACAAATTCAGCCGCTC
GCTGGTCGAGCGCTGCAACATGATCATCGTGGGCGATGTCAGCCCGCAGAAACTCGTCAGAACCACCATGGCCAAGTCGGTGCTCGATGCCGGCTGGGGT
CAACTGAAAACGATGCTGGCCTACAAATGCGCGCACGCAGGCATCGTCTTCAGGGTAGTGAACGAGGCGTACACCACCCAAACCTGTAGCTGTTGCGGTG
CATTGCCCGACAGCAGGCCGAGAGGTATCGCAGGGCTTGGAATAAGAGAATGGATCTGTGAGTGCGGTGTCACTCACGACCGCGACGTGAACGCGGCCAG
GAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGCTTAGGCCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 97 | 1155 | + | No |
AG : TnpB
ORF sequence :
MKHTKTLQVRVRDKHAPLLRQMARSVNFVWNYLNELSHRSIRERGVFLSAFDLHPYSKGAGKELGLHSQTLQCVAAEYVTRRKQYRKARLNWRKSGGARR
SLGWVPFNTAAASWKNGQIYHNGYYFKVWDSYGLGQYRFRSGSFSEDARGRWYFNVVVELDTQLSAGQGAVGIDLGLKDVATCSDGQRLENGRFYRDLEP
RLAKAQRAGKKARVRAIHAKIANRRKDALHKFSRSLVERCNMIIVGDVSPQKLVRTTMAKSVLDAGWGQLKTMLAYKCAHAGIVFRVVNEAYTTQTCSCC
GALPDSRPRGIAGLGIREWICECGVTHDRDVNAARNILALGHERPGEGIPGA
SLGWVPFNTAAASWKNGQIYHNGYYFKVWDSYGLGQYRFRSGSFSEDARGRWYFNVVVELDTQLSAGQGAVGIDLGLKDVATCSDGQRLENGRFYRDLEP
RLAKAQRAGKKARVRAIHAKIANRRKDALHKFSRSLVERCNMIIVGDVSPQKLVRTTMAKSVLDAGWGQLKTMLAYKCAHAGIVFRVVNEAYTTQTCSCC
GALPDSRPRGIAGLGIREWICECGVTHDRDVNAARNILALGHERPGEGIPGA
Blast result :
Comments
ISPa80 is 55% aa similar to ISBth17.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.