ISPa80

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MF144194 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 1160 p1160-VIM
Pseudomonas rhodesiae BS2777
DNA section
IS Length : 1172 bp

Ends


Left end : CAGTCGGGCCGTAAAAACCCGTCATTCTTGGCGGGGATATAAGACCCATCGCGCAGCGGCCCTTGGGTTATTCCGATTTTGTGGCACGTTATTGCCATGA II struct. : Yes
Right end : CTCACGACCGCGACGTGAACGCGGCCAGGAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGCTTAGGCCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TAAAAAGGGCCGCTTTATGCGGCCCTTCTCAA

DNA sequence

CAGTCGGGCCGTAAAAACCCGTCATTCTTGGCGGGGATATAAGACCCATCGCGCAGCGGCCCTTGGGTTATTCCGATTTTGTGGCACGTTATTGCCATGA
AGCACACCAAGACCCTCCAAGTTCGCGTTCGAGACAAGCATGCGCCGCTGCTGCGGCAGATGGCGCGCAGCGTGAATTTCGTCTGGAACTACCTGAATGA
ACTCAGCCATCGCTCAATCCGTGAGCGTGGGGTGTTTCTGTCTGCCTTTGATCTGCATCCGTACAGCAAGGGAGCAGGTAAGGAACTTGGCCTGCATAGC
CAAACGCTGCAATGTGTCGCGGCTGAATACGTCACCCGGCGCAAGCAGTATCGCAAGGCGAGGCTGAACTGGCGCAAGTCTGGTGGTGCACGGCGGTCGC
TCGGGTGGGTGCCGTTCAACACCGCGGCTGCCAGTTGGAAGAATGGCCAGATCTACCACAACGGGTACTATTTCAAGGTCTGGGACAGCTACGGGCTGGG
CCAGTACCGCTTCCGTTCCGGCAGCTTCAGCGAAGACGCTCGAGGCCGCTGGTATTTCAATGTCGTCGTCGAGCTGGATACCCAGCTATCAGCGGGGCAA
GGGGCAGTTGGCATCGACCTGGGCCTGAAGGACGTGGCCACCTGTAGCGACGGGCAGCGACTGGAGAACGGCCGTTTCTACCGCGACCTGGAGCCCAGGC
TGGCGAAAGCCCAGCGTGCCGGCAAGAAGGCTCGTGTGCGGGCCATCCACGCGAAGATCGCCAATCGGCGCAAGGATGCCTTGCACAAATTCAGCCGCTC
GCTGGTCGAGCGCTGCAACATGATCATCGTGGGCGATGTCAGCCCGCAGAAACTCGTCAGAACCACCATGGCCAAGTCGGTGCTCGATGCCGGCTGGGGT
CAACTGAAAACGATGCTGGCCTACAAATGCGCGCACGCAGGCATCGTCTTCAGGGTAGTGAACGAGGCGTACACCACCCAAACCTGTAGCTGTTGCGGTG
CATTGCCCGACAGCAGGCCGAGAGGTATCGCAGGGCTTGGAATAAGAGAATGGATCTGTGAGTGCGGTGTCACTCACGACCGCGACGTGAACGCGGCCAG
GAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGCTTAGGCCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa971155+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKHTKTLQVRVRDKHAPLLRQMARSVNFVWNYLNELSHRSIRERGVFLSAFDLHPYSKGAGKELGLHSQTLQCVAAEYVTRRKQYRKARLNWRKSGGARR
SLGWVPFNTAAASWKNGQIYHNGYYFKVWDSYGLGQYRFRSGSFSEDARGRWYFNVVVELDTQLSAGQGAVGIDLGLKDVATCSDGQRLENGRFYRDLEP
RLAKAQRAGKKARVRAIHAKIANRRKDALHKFSRSLVERCNMIIVGDVSPQKLVRTTMAKSVLDAGWGQLKTMLAYKCAHAGIVFRVVNEAYTTQTCSCC
GALPDSRPRGIAGLGIREWICECGVTHDRDVNAARNILALGHERPGEGIPGA

 

Blast result :
Comments
ISPa80 is 55% aa similar to ISBth17.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.