ISStan1
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003861.1 | ND | Streptococcus anginosus | Streptococcus anginosus C238 Streptococcus anginosus subsp. whileyi MAS624 |
DNA section
IS Length : 1120 bp
Ends
IR Length : 12/22
IRL : GAAAGTTCTAAAATGAAGTTAGCCACTTCGAGTGTATGAAAAAACATCTC
IRR : TAGTGATTAAGATAAGTCAGAACTTTTCCCTTTTTAAAGGTCATAAAAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTAAACTTTTTCTTTCAATT | TAATCTTTTAAGTAGGCTCT | 0 |
DNA sequence
GAAAGTTCTAAAATGAAGTTAGCCACTTCGAGTGTATGAAAAAACATCTCAAAGAGATATACTTGTAGTTCACCACAAATACAAGGAGATTCTTTAAGAT
GTCTACTCATTATACCCCAAAAGGCAAGCACTTAACAATAGCTGAGCGCCGTTTAATCGAAAAGTGGAAGGACGAGGGAAAATCAAATCGTCAAATCGCT
CTCTTGCTTGGAAAAGGACCTCAAACTATTCATAATGACATCAAGCGTGAGCTGGTTCGCCAACAAGTACGCAAGGGAAAGTTTGAACTGCTCTATTCTG
CAGATGCTGCTCAAAGTCGTTACGAATCAGCTAGAAAGAAGTCTGTCCGAAAGGGTCGACTTGATAAGGCTATCAAGGAGAAAATCTTGCACTATATCAA
GCAGAAATACTCTCCTGAAATGATGGTAAATGCAAAGAAAGTCAACGTCCCCATATCTACCATCTACTACTGGATTCATCATGGACAGCTAGGACTGACC
TACAAGGACTTGATTTATCCCAGAAAACCAAAAGCTGAAAAGAAGAGGGCTAGTCCGCGGTTTAAACCTGTTGGGAAGTCTATTGAGGGACGACCTGAAA
TCATCAACCAACGTCTTGAAAATGGGCATTATGAGATTGATACCGTCATTCTGACTAAGCAGAAAAATCAGTGCCTTCTCACCCTCACTGACCGCAGAAG
TCGGCATCAGATTATCCGACTAATCCCTGACAAAACCGCTCAGTTGGTCAATCAAGTTGTCGCTGCACTTATGGAAACTAATACCATCAAATTCATCACG
GCTGATAATGGAACGGAGTTTAATAGACTAGCTGAGATATTTCCACAGGACAACATCTATTACGCGTACCCTTACTCCTCACGGGAAAGAGGAACGAACG
AGAATCATAACAGACTTATCAGACGATGGCTTCCTAAGGGAGTTAAGAAAATAACCCACAAACAAGTCACTTTCATCGAAAATTGGATTAATAACTATCC
TAAGAAAGTTTTAAACTACAAGTCACCTCAGATTTTTTTGATGACTGGCTAACTTCTACTTGAAATTGAGCTTTTTATGACCTTTAAAAAGGGAAAAGTT
CTGACTTATCTTAATCACTA
GTCTACTCATTATACCCCAAAAGGCAAGCACTTAACAATAGCTGAGCGCCGTTTAATCGAAAAGTGGAAGGACGAGGGAAAATCAAATCGTCAAATCGCT
CTCTTGCTTGGAAAAGGACCTCAAACTATTCATAATGACATCAAGCGTGAGCTGGTTCGCCAACAAGTACGCAAGGGAAAGTTTGAACTGCTCTATTCTG
CAGATGCTGCTCAAAGTCGTTACGAATCAGCTAGAAAGAAGTCTGTCCGAAAGGGTCGACTTGATAAGGCTATCAAGGAGAAAATCTTGCACTATATCAA
GCAGAAATACTCTCCTGAAATGATGGTAAATGCAAAGAAAGTCAACGTCCCCATATCTACCATCTACTACTGGATTCATCATGGACAGCTAGGACTGACC
TACAAGGACTTGATTTATCCCAGAAAACCAAAAGCTGAAAAGAAGAGGGCTAGTCCGCGGTTTAAACCTGTTGGGAAGTCTATTGAGGGACGACCTGAAA
TCATCAACCAACGTCTTGAAAATGGGCATTATGAGATTGATACCGTCATTCTGACTAAGCAGAAAAATCAGTGCCTTCTCACCCTCACTGACCGCAGAAG
TCGGCATCAGATTATCCGACTAATCCCTGACAAAACCGCTCAGTTGGTCAATCAAGTTGTCGCTGCACTTATGGAAACTAATACCATCAAATTCATCACG
GCTGATAATGGAACGGAGTTTAATAGACTAGCTGAGATATTTCCACAGGACAACATCTATTACGCGTACCCTTACTCCTCACGGGAAAGAGGAACGAACG
AGAATCATAACAGACTTATCAGACGATGGCTTCCTAAGGGAGTTAAGAAAATAACCCACAAACAAGTCACTTTCATCGAAAATTGGATTAATAACTATCC
TAAGAAAGTTTTAAACTACAAGTCACCTCAGATTTTTTTGATGACTGGCTAACTTCTACTTGAAATTGAGCTTTTTATGACCTTTAAAAAGGGAAAAGTT
CTGACTTATCTTAATCACTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 99 | 1052 | + | No |
Chemistry : DDE
ORF sequence :
MSTHYTPKGKHLTIAERRLIEKWKDEGKSNRQIALLLGKGPQTIHNDIKRELVRQQVRKGKFELLYSADAAQSRYESARKKSVRKGRLDKAIKEKILHYI
KQKYSPEMMVNAKKVNVPISTIYYWIHHGQLGLTYKDLIYPRKPKAEKKRASPRFKPVGKSIEGRPEIINQRLENGHYEIDTVILTKQKNQCLLTLTDRR
SRHQIIRLIPDKTAQLVNQVVAALMETNTIKFITADNGTEFNRLAEIFPQDNIYYAYPYSSRERGTNENHNRLIRRWLPKGVKKITHKQVTFIENWINNY
PKKVLNYKSPQIFLMTG
KQKYSPEMMVNAKKVNVPISTIYYWIHHGQLGLTYKDLIYPRKPKAEKKRASPRFKPVGKSIEGRPEIINQRLENGHYEIDTVILTKQKNQCLLTLTDRR
SRHQIIRLIPDKTAQLVNQVVAALMETNTIKFITADNGTEFNRLAEIFPQDNIYYAYPYSSRERGTNENHNRLIRRWLPKGVKKITHKQVTFIENWINNY
PKKVLNYKSPQIFLMTG
Blast result :
Comments
ISStan1 is 84% aa similar to ISStin9.
Ends are done by an empty site found in Streptococcus constellatus subsp. pharyngis C1050 (CP003859)
Ends are done by an empty site found in Streptococcus constellatus subsp. pharyngis C1050 (CP003859)
References