ISStan1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003861.1 ND Streptococcus anginosus
Streptococcus anginosus C238
Streptococcus anginosus subsp. whileyi MAS624
DNA section
IS Length : 1120 bp

Ends


IR Length : 12/22

IRL : GAAAGTTCTAAAATGAAGTTAGCCACTTCGAGTGTATGAAAAAACATCTC
IRR : TAGTGATTAAGATAAGTCAGAACTTTTCCCTTTTTAAAGGTCATAAAAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTAAACTTTTTCTTTCAATTTAATCTTTTAAGTAGGCTCT0

DNA sequence

GAAAGTTCTAAAATGAAGTTAGCCACTTCGAGTGTATGAAAAAACATCTCAAAGAGATATACTTGTAGTTCACCACAAATACAAGGAGATTCTTTAAGAT
GTCTACTCATTATACCCCAAAAGGCAAGCACTTAACAATAGCTGAGCGCCGTTTAATCGAAAAGTGGAAGGACGAGGGAAAATCAAATCGTCAAATCGCT
CTCTTGCTTGGAAAAGGACCTCAAACTATTCATAATGACATCAAGCGTGAGCTGGTTCGCCAACAAGTACGCAAGGGAAAGTTTGAACTGCTCTATTCTG
CAGATGCTGCTCAAAGTCGTTACGAATCAGCTAGAAAGAAGTCTGTCCGAAAGGGTCGACTTGATAAGGCTATCAAGGAGAAAATCTTGCACTATATCAA
GCAGAAATACTCTCCTGAAATGATGGTAAATGCAAAGAAAGTCAACGTCCCCATATCTACCATCTACTACTGGATTCATCATGGACAGCTAGGACTGACC
TACAAGGACTTGATTTATCCCAGAAAACCAAAAGCTGAAAAGAAGAGGGCTAGTCCGCGGTTTAAACCTGTTGGGAAGTCTATTGAGGGACGACCTGAAA
TCATCAACCAACGTCTTGAAAATGGGCATTATGAGATTGATACCGTCATTCTGACTAAGCAGAAAAATCAGTGCCTTCTCACCCTCACTGACCGCAGAAG
TCGGCATCAGATTATCCGACTAATCCCTGACAAAACCGCTCAGTTGGTCAATCAAGTTGTCGCTGCACTTATGGAAACTAATACCATCAAATTCATCACG
GCTGATAATGGAACGGAGTTTAATAGACTAGCTGAGATATTTCCACAGGACAACATCTATTACGCGTACCCTTACTCCTCACGGGAAAGAGGAACGAACG
AGAATCATAACAGACTTATCAGACGATGGCTTCCTAAGGGAGTTAAGAAAATAACCCACAAACAAGTCACTTTCATCGAAAATTGGATTAATAACTATCC
TAAGAAAGTTTTAAACTACAAGTCACCTCAGATTTTTTTGATGACTGGCTAACTTCTACTTGAAATTGAGCTTTTTATGACCTTTAAAAAGGGAAAAGTT
CTGACTTATCTTAATCACTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa991052+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTHYTPKGKHLTIAERRLIEKWKDEGKSNRQIALLLGKGPQTIHNDIKRELVRQQVRKGKFELLYSADAAQSRYESARKKSVRKGRLDKAIKEKILHYI
KQKYSPEMMVNAKKVNVPISTIYYWIHHGQLGLTYKDLIYPRKPKAEKKRASPRFKPVGKSIEGRPEIINQRLENGHYEIDTVILTKQKNQCLLTLTDRR
SRHQIIRLIPDKTAQLVNQVVAALMETNTIKFITADNGTEFNRLAEIFPQDNIYYAYPYSSRERGTNENHNRLIRRWLPKGVKKITHKQVTFIENWINNY
PKKVLNYKSPQIFLMTG

 

Blast result :
Comments
ISStan1 is 84% aa similar to ISStin9.
Ends are done by an empty site found in Streptococcus constellatus subsp. pharyngis C1050 (CP003859)
References