ISHahy10

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1220 bp

Ends


IR Length : 21/26

IRL : GTTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCT
IRR : CTTAAATTGCAATATTAAATGCAACACCTATAGAAAAGACTAGTATAATA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCACAAAAATTTT/AAAATTTTAAATTTTATTAA7

DNA sequence

GTTTCATTGTAAAATTAAATGCAACAGACAAAAAAATTAGAACCATAGCTAAAAACCTAGTATGATATAAGTGACCAAACAAAATCATATGGAGGTTTAA
GCTATGGCTCATACTAAAGATAATACCACAACTCAAAGAACTTTTAAACATCTTTCTTCTTATGAAAGAGGTAAAATTGCTGCTCTTCTGCAAGAAGGAT
ACTCTCAAAGAAAGATTGCTGAAAAGCTAGGCAGAAATCACAGCACTATTAATCGTGAAATTAAAAGAGGTACTACAACTCAACTTAACTATGATCTGTC
TACTTATGAACAGTATTTCCCTGAAACTGGTCAAGCTGTCTTTGAGAAAAATCGTTCTCACTGCGGTAATAAATCTAAATTGCTTAAAGTGGAATCTTTT
CTACAACATGCTGAAAAAATGATCTTGAAAAATGATTGGTCTCCAGATGTTGTTGTTGGACACGCTCTAAAAAATAATGAATTTACTAAAGATGAAATGG
TATCCACTAAAACTCTCTATAATTATATAGATCAAAATTTATTAGATGTTAAAAATATTGATCTTCAACTTAAAGTTCGCAGAAAACAAAGAGATCCTAA
TAAAAGAAAGCATAAAAGACTTCAGGGTAAAAGTATTGAAGAAAGACCAGAAACAGTTGATGATCGAAAAGAATTCGGCCACTGGGAAATTGATACCGTC
AGAGGTACTAGAACTAAAGATAATGTCCTTTTAACTATTACTGAAAGATCCACTCGTCAGCATTTAATTAGACTCTTAGAAGATAAGAGCTCTGCTGCTG
TAGATCAAGCAATTAAGAAACTTAAAGTTCAATTTTCTAATGTTTTTAAAAAGGTATTTAAAACCATTACAGCTGATAATGGAACTGAATTTGCTAATTT
ATATAATCATGATGTTGATGTTTACTATGCTCATCCTTATTCAGCCTGGGAAAGAGGCACTAATGAAAGACATAATGGTCTCATTAGAAGATTCATTCCT
AAAGGAGAACAAATAAGCAACTATACAGAAAAACAGATTCGGAGAATACAAAATTGGTGTAATAATTATCCAAGAAAATTATTGGATTATTCTACTCCAA
ATGAATTATTCCAAAAAGAACTTCAAGCTATTATTAACCCTGTTTAAACAATTTAAAATTCAAAATACTATATTATACTAGTCTTTTCTATAGGTGTTGC
ATTTAATATTGCAATTTAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa1041147+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAHTKDNTTTQRTFKHLSSYERGKIAALLQEGYSQRKIAEKLGRNHSTINREIKRGTTTQLNYDLSTYEQYFPETGQAVFEKNRSHCGNKSKLLKVESFL
QHAEKMILKNDWSPDVVVGHALKNNEFTKDEMVSTKTLYNYIDQNLLDVKNIDLQLKVRRKQRDPNKRKHKRLQGKSIEERPETVDDRKEFGHWEIDTVR
GTRTKDNVLLTITERSTRQHLIRLLEDKSSAAVDQAIKKLKVQFSNVFKKVFKTITADNGTEFANLYNHDVDVYYAHPYSAWERGTNERHNGLIRRFIPK
GEQISNYTEKQIRRIQNWCNNYPRKLLDYSTPNELFQKELQAIINPV

 

Blast result :
Comments
ISHahy10 is 73% aa similar to ISTki1.
References
1] Bassett K. (2017) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683