ISPsy45
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024712 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae Pseudomonas syringae pv. actinidiae MAFF212063 |
DNA section
IS Length : 1188 bp
Ends
IR Length : 15/21
IRL : GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTT
IRR : GGAAGGTCTGAAGTAGGCATCGATTTTTGACGCCCTCGTGGCTCGAGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAATTGCTATTTTTC | TTAG | CTATTTCTCGCCAAA | 4 |
DNA sequence
GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTTCACCGAGCCTCTCCGATGAAACAGATGTCCTTCGCCGACGCCGAATACGC
CGGAAAACGTAAGCAGACCCGTCGCGAGCGCTTCCTGATTGAGATGGATCAGGTCGTACCGTGGAAGGGCCTGATCGCCCTGATTGAGCCTCATTATCCG
AAGGGTCAAGGTGGACGTCCAGCCTATGCGCTGATGGCGATGTTGCGGGTGCATCTAATGCAGAACTGGTTCGGCTACAGCGACCCGGCGATGGAGGAAG
CGTTGTACGAAACAACGATCCTGCGCCAATTCGCGGGGTTGAGTCTGGATCGGATTCCGGATGAAACCACCATTCTCAACTTCCGGCGCCTGTTGGAAAA
ACATGAGTTGGCAGGCGGGATTCTGCAGGTCATCAATGGCTATCTGGGTGATCGTGGTTTGATGCTGCGCCAAGGTACGGTAGTCGATGCGACGATTATT
CATGCGCCGAGTTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACTAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAATTGCTACACGGTGAGGA
AACCTATGTCAGTGGTGATGCAGGTTACACCGGCGTGGACAAGCGTGCGGAGCATCAGGATCGCCAGATGATCTGGTCAATTGCGGCCCGTCCAAGCCGC
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTGCGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTGTGGAT
GGTGCGGAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAGGGTACTGTTTGAAGGAAACTCGATGAGTTAACAGCG
CAAAAACGTCTGATTATCTGATCGGGCGAGTTTTTTTGAACCTCGAGCCACGAGGGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
CGGAAAACGTAAGCAGACCCGTCGCGAGCGCTTCCTGATTGAGATGGATCAGGTCGTACCGTGGAAGGGCCTGATCGCCCTGATTGAGCCTCATTATCCG
AAGGGTCAAGGTGGACGTCCAGCCTATGCGCTGATGGCGATGTTGCGGGTGCATCTAATGCAGAACTGGTTCGGCTACAGCGACCCGGCGATGGAGGAAG
CGTTGTACGAAACAACGATCCTGCGCCAATTCGCGGGGTTGAGTCTGGATCGGATTCCGGATGAAACCACCATTCTCAACTTCCGGCGCCTGTTGGAAAA
ACATGAGTTGGCAGGCGGGATTCTGCAGGTCATCAATGGCTATCTGGGTGATCGTGGTTTGATGCTGCGCCAAGGTACGGTAGTCGATGCGACGATTATT
CATGCGCCGAGTTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACTAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAATTGCTACACGGTGAGGA
AACCTATGTCAGTGGTGATGCAGGTTACACCGGCGTGGACAAGCGTGCGGAGCATCAGGATCGCCAGATGATCTGGTCAATTGCGGCCCGTCCAAGCCGC
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTGCGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTGTGGAT
GGTGCGGAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAGGGTACTGTTTGAAGGAAACTCGATGAGTTAACAGCG
CAAAAACGTCTGATTATCTGATCGGGCGAGTTTTTTTGAACCTCGAGCCACGAGGGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 66 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MRFPDLAKYPNTFHRASPMKQMSFADAEYAGKRKQTRRERFLIEMDQVVPWKGLIALIEPHYPKGQGGRPAYALMAMLRVHLMQNWFGYSDPAMEEALYE
TTILRQFAGLSLDRIPDETTILNFRRLLEKHELAGGILQVINGYLGDRGLMLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVD
AESGLVHSLVGTAANVADVTQVDQLLHGEETYVSGDAGYTGVDKRAEHQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKR
QFGYTKVRFRGLAKNTAQQATLFALSNLWMVRKRLLAMGEVRL
TTILRQFAGLSLDRIPDETTILNFRRLLEKHELAGGILQVINGYLGDRGLMLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVD
AESGLVHSLVGTAANVADVTQVDQLLHGEETYVSGDAGYTGVDKRAEHQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKR
QFGYTKVRFRGLAKNTAQQATLFALSNLWMVRKRLLAMGEVRL
Blast result :
Comments
ISPsy45 is 98% aa similar to ISPssy.
References
1] Margi Butler (2017) Direct submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.