ISPsy45

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP024712 ND Pseudomonas syringae
Pseudomonas syringae pv. actinidiae
Pseudomonas syringae pv. actinidiae MAFF212063
DNA section
IS Length : 1188 bp

Ends


IR Length : 15/21

IRL : GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTT
IRR : GGAAGGTCTGAAGTAGGCATCGATTTTTGACGCCCTCGTGGCTCGAGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GAAATTGCTATTTTTCTTAGCTATTTCTCGCCAAA4

DNA sequence

GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTTCACCGAGCCTCTCCGATGAAACAGATGTCCTTCGCCGACGCCGAATACGC
CGGAAAACGTAAGCAGACCCGTCGCGAGCGCTTCCTGATTGAGATGGATCAGGTCGTACCGTGGAAGGGCCTGATCGCCCTGATTGAGCCTCATTATCCG
AAGGGTCAAGGTGGACGTCCAGCCTATGCGCTGATGGCGATGTTGCGGGTGCATCTAATGCAGAACTGGTTCGGCTACAGCGACCCGGCGATGGAGGAAG
CGTTGTACGAAACAACGATCCTGCGCCAATTCGCGGGGTTGAGTCTGGATCGGATTCCGGATGAAACCACCATTCTCAACTTCCGGCGCCTGTTGGAAAA
ACATGAGTTGGCAGGCGGGATTCTGCAGGTCATCAATGGCTATCTGGGTGATCGTGGTTTGATGCTGCGCCAAGGTACGGTAGTCGATGCGACGATTATT
CATGCGCCGAGTTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACTAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAATTGCTACACGGTGAGGA
AACCTATGTCAGTGGTGATGCAGGTTACACCGGCGTGGACAAGCGTGCGGAGCATCAGGATCGCCAGATGATCTGGTCAATTGCGGCCCGTCCAAGCCGC
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTGCGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTGTGGAT
GGTGCGGAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAGGGTACTGTTTGAAGGAAACTCGATGAGTTAACAGCG
CAAAAACGTCTGATTATCTGATCGGGCGAGTTTTTTTGAACCTCGAGCCACGAGGGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa661043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRFPDLAKYPNTFHRASPMKQMSFADAEYAGKRKQTRRERFLIEMDQVVPWKGLIALIEPHYPKGQGGRPAYALMAMLRVHLMQNWFGYSDPAMEEALYE
TTILRQFAGLSLDRIPDETTILNFRRLLEKHELAGGILQVINGYLGDRGLMLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVD
AESGLVHSLVGTAANVADVTQVDQLLHGEETYVSGDAGYTGVDKRAEHQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKR
QFGYTKVRFRGLAKNTAQQATLFALSNLWMVRKRLLAMGEVRL

 

Blast result :
Comments
ISPsy45 is 98% aa similar to ISPssy.
References
1] Margi Butler (2017) Direct submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.