ISPsy44
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024712 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae MAFF212063 Pseudomonas syringae pv. actinidiae ICMP 9853 |
DNA section
IS Length : 855 bp
Ends
IR Length : 16
IRL : GGTCTGTTCCCGTTTCCACGTAACCCATTGATCCCTATGAGAACAGGCCC
IRR : GGTCTGTTCCCGTTTCACATTGGTAGCCACAGAAAAGCGCAGGCCATTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCAGGAGAGCGTC | CTAG | GCCTTAGTACCT | 4 |
DNA sequence
GGTCTGTTCCCGTTTCCACGTAACCCATTGATCCCTATGAGAACAGGCCCGTATTGTTGGAGTTCTCACACAACACCAATACGAGCCTGCAATGCCCCGA
TTAATGCTCAGTGATGAGCACTGGCCGAAGCTACGAGAAATTTTGCTACACGAATCGATCTACAACAAGCGAGATTTGCGTACCACGGTTGAAGGCATGC
TGTATCGCATGCGTGTGGGTTGCCCTTGGCGAGACCTGCCGAAAGCGTTTGGAAACTGGAGCAAGGTCTACAAGCGGTTCAATGCCTGGTCTGCTTCAGG
CAAGTGGGTCAAGGTGCCTGAGGTGCTGATGACTGATCCTGACATGGAGTGGGTCTTCATTGATGGCAGCTATGCCAAGGCTCATCAGCACAGCGCAGGT
GCTGCCAGCACGCAGGACCAGGCCATCGGAAAAAGCCGAGCCGGTAACACCAGCAAGATTCACCTGGCTGTAGACGCTTGTGGGCTGCCTATTGCATTTG
ACGTGACCGCAGGCCAGACCAATGATTGTTCGCAGGCGGCCTCGTTGATTGCCAAGGTGCCCGATGCAGAAGTGATCATTGCGGACAAGGGCTACGACAC
TGAAGCGATACGCGCTCAGGTCGAGCAGCAAGGCAGCAAAGTGGTGATTCCACGAAAGCGCAATTCTCTGAAAGGGAACGCAGATCTGGACAAAGGGTTA
TATCGCAATCGACATCTCGTAGAAAACGCCTTCGCCCGGTTGAAGCATTTCCGGGCGGTGGCTTCTCGATTTGACAAACTCAAGAGAAACTATGAAAGCG
TCATAGCAATGGCCTGCGCTTTTCTGTGGCTACCAATGTGAAACGGGAACAGACC
TTAATGCTCAGTGATGAGCACTGGCCGAAGCTACGAGAAATTTTGCTACACGAATCGATCTACAACAAGCGAGATTTGCGTACCACGGTTGAAGGCATGC
TGTATCGCATGCGTGTGGGTTGCCCTTGGCGAGACCTGCCGAAAGCGTTTGGAAACTGGAGCAAGGTCTACAAGCGGTTCAATGCCTGGTCTGCTTCAGG
CAAGTGGGTCAAGGTGCCTGAGGTGCTGATGACTGATCCTGACATGGAGTGGGTCTTCATTGATGGCAGCTATGCCAAGGCTCATCAGCACAGCGCAGGT
GCTGCCAGCACGCAGGACCAGGCCATCGGAAAAAGCCGAGCCGGTAACACCAGCAAGATTCACCTGGCTGTAGACGCTTGTGGGCTGCCTATTGCATTTG
ACGTGACCGCAGGCCAGACCAATGATTGTTCGCAGGCGGCCTCGTTGATTGCCAAGGTGCCCGATGCAGAAGTGATCATTGCGGACAAGGGCTACGACAC
TGAAGCGATACGCGCTCAGGTCGAGCAGCAAGGCAGCAAAGTGGTGATTCCACGAAAGCGCAATTCTCTGAAAGGGAACGCAGATCTGGACAAAGGGTTA
TATCGCAATCGACATCTCGTAGAAAACGCCTTCGCCCGGTTGAAGCATTTCCGGGCGGTGGCTTCTCGATTTGACAAACTCAAGAGAAACTATGAAAGCG
TCATAGCAATGGCCTGCGCTTTTCTGTGGCTACCAATGTGAAACGGGAACAGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 92 | 841 | + | No |
Chemistry : DDE
ORF sequence :
MPRLMLSDEHWPKLREILLHESIYNKRDLRTTVEGMLYRMRVGCPWRDLPKAFGNWSKVYKRFNAWSASGKWVKVPEVLMTDPDMEWVFIDGSYAKAHQH
SAGAASTQDQAIGKSRAGNTSKIHLAVDACGLPIAFDVTAGQTNDCSQAASLIAKVPDAEVIIADKGYDTEAIRAQVEQQGSKVVIPRKRNSLKGNADLD
KGLYRNRHLVENAFARLKHFRAVASRFDKLKRNYESVIAMACAFLWLPM
SAGAASTQDQAIGKSRAGNTSKIHLAVDACGLPIAFDVTAGQTNDCSQAASLIAKVPDAEVIIADKGYDTEAIRAQVEQQGSKVVIPRKRNSLKGNADLD
KGLYRNRHLVENAFARLKHFRAVASRFDKLKRNYESVIAMACAFLWLPM
Blast result :
Comments
ISPsy44 is 92% aa similar to ISPa67.
References
1] Margi Butler (2017) Direct submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.