ISPsy44

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP024712 ND Pseudomonas syringae
Pseudomonas syringae pv. actinidiae MAFF212063
Pseudomonas syringae pv. actinidiae ICMP 9853
DNA section
IS Length : 855 bp

Ends


IR Length : 16

IRL : GGTCTGTTCCCGTTTCCACGTAACCCATTGATCCCTATGAGAACAGGCCC
IRR : GGTCTGTTCCCGTTTCACATTGGTAGCCACAGAAAAGCGCAGGCCATTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCAGGAGAGCGTCCTAGGCCTTAGTACCT4

DNA sequence

GGTCTGTTCCCGTTTCCACGTAACCCATTGATCCCTATGAGAACAGGCCCGTATTGTTGGAGTTCTCACACAACACCAATACGAGCCTGCAATGCCCCGA
TTAATGCTCAGTGATGAGCACTGGCCGAAGCTACGAGAAATTTTGCTACACGAATCGATCTACAACAAGCGAGATTTGCGTACCACGGTTGAAGGCATGC
TGTATCGCATGCGTGTGGGTTGCCCTTGGCGAGACCTGCCGAAAGCGTTTGGAAACTGGAGCAAGGTCTACAAGCGGTTCAATGCCTGGTCTGCTTCAGG
CAAGTGGGTCAAGGTGCCTGAGGTGCTGATGACTGATCCTGACATGGAGTGGGTCTTCATTGATGGCAGCTATGCCAAGGCTCATCAGCACAGCGCAGGT
GCTGCCAGCACGCAGGACCAGGCCATCGGAAAAAGCCGAGCCGGTAACACCAGCAAGATTCACCTGGCTGTAGACGCTTGTGGGCTGCCTATTGCATTTG
ACGTGACCGCAGGCCAGACCAATGATTGTTCGCAGGCGGCCTCGTTGATTGCCAAGGTGCCCGATGCAGAAGTGATCATTGCGGACAAGGGCTACGACAC
TGAAGCGATACGCGCTCAGGTCGAGCAGCAAGGCAGCAAAGTGGTGATTCCACGAAAGCGCAATTCTCTGAAAGGGAACGCAGATCTGGACAAAGGGTTA
TATCGCAATCGACATCTCGTAGAAAACGCCTTCGCCCGGTTGAAGCATTTCCGGGCGGTGGCTTCTCGATTTGACAAACTCAAGAGAAACTATGAAAGCG
TCATAGCAATGGCCTGCGCTTTTCTGTGGCTACCAATGTGAAACGGGAACAGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
750 bp249 aa92841+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRLMLSDEHWPKLREILLHESIYNKRDLRTTVEGMLYRMRVGCPWRDLPKAFGNWSKVYKRFNAWSASGKWVKVPEVLMTDPDMEWVFIDGSYAKAHQH
SAGAASTQDQAIGKSRAGNTSKIHLAVDACGLPIAFDVTAGQTNDCSQAASLIAKVPDAEVIIADKGYDTEAIRAQVEQQGSKVVIPRKRNSLKGNADLD
KGLYRNRHLVENAFARLKHFRAVASRFDKLKRNYESVIAMACAFLWLPM

 

Blast result :
Comments
ISPsy44 is 92% aa similar to ISPa67.
References
1] Margi Butler (2017) Direct submission.
2] Butler,M., Taiaroa,G., Sumpter,N. and Poulter,R. (2017) Direct GenBank submission.