ISBli33
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014869 | ND | Brevibacterium linens | Brevibacterium linens Brevibacterium linens BS258 Brevibacterium epidermidis BS258 |
DNA section
IS Length : 1276 bp
Ends
IR Length : 26/28
IRL : GGGACTGCTGAAGGTTTGGTTGACTTCACGACTGGATAAATTCCAGGAAG
IRR : GGGACTGCTGAAGGTTTAGTTGACTCCAGGGTTTATGCCGCCAGAGCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGATATCG | GGA | CGCGATACCG | 3 |
GCCCGGGCTG | AAG | CGACCCGTTT | 3 |
DNA sequence
GGGACTGCTGAAGGTTTGGTTGACTTCACGACTGGATAAATTCCAGGAAGGATGGAAGTCATGCCAAAGATCTACACCGATGAGTTCAAGCAATCAGCGC
TCGAGCTCCTGGGCGAGGGGATGACCCAGAAGCAGGTCTGCGCCGACCTCGGCATCTCGAAGTCAGCTCTCCAGGCCTGGGTACGTGACTCGCGGCTACG
CGAGCACGGACTCGAGCCCTCCCGTGATGTCGAGGAGTCTCGCGCCCAGGCGGCAGCGCTGAAACGCATTCGCGAGCTCGAGAGGGAGAACAAGATCCTC
CGCGAGGCTGCAGCGTATCTCTCGCAAGCGAACTTGAGGCTCGGTGGTCATCACCCCAAATGATGTACCCGCTGGTCCTCGACCCTGCTGCCACCGGGGT
GCCGGTGGCAGTGGCCTGCCGGGTCCTCGGCTTTACCAAGCAGGGCTTCTACAAGTGGTGCGCGAAACCTATCTCTGACCGGGATCTCGAGGAGGCGCAC
TTGATCAATGCCGCCTACGACGTGCATACGGACGATCCCGAGTTCGGGCACCGGTTCATCGCTGATGAACTCCACGCGTGCGGATACGAGGCGTCAGAGC
GTCGTGTGTGGCGGCTGTGCTCGCAGCAGGAACTGTTCTCCCTCACGATCAAACGGGCCCGGAAGCACGGTAAGAAGCCCGGCCCGCCAGTGTGTGATGA
CCTCGTCGAACGCGACTTCTCAGCGTCAGGCATCAACGAACTATGGTTGACCGACATTACCGAGCATCACACCAGTGAGGGGAAACTGTACATGTGCGCG
GTCAAGGATGTGTTCAGCAACAGAATCGTCGGTTATGCCATCGATTCGAGAATGAAATCTCGCCTGGCTGTGGCTGCGATTGATGATGCTGTAGCCCGTC
GTGGCGGACAGCGAGCCGTGGCCGGTTGCGTGGTGCATTCGGATCGCGGGTCGCAATTTCGTTCTCGGAAAATCCAGCAGGTTCTACGGCATTACGGGCT
CGTGGGGTCGATGGGAAGGGTTGGTGCTGCTGGTGATAATGCGGCGATGGAATCGTTCTTCGCCGTGTTGCAGAAGAACGTCCTCGACCGGGGCCGTTGG
GACACGCGAGCGAGGTTGCGCACAGCGATCGTGCACTGGGTCGAACGAACCTATCACCGGAAGCGTCGACAGAGGAGACTGGATAAACTGACCCCGGTTG
AATACGAGCTTGTTCACCACAAGGCCGTCGCTCTGGCGGCATAAACCCTGGAGTCAACTAAACCTTCAGCAGTCCC
TCGAGCTCCTGGGCGAGGGGATGACCCAGAAGCAGGTCTGCGCCGACCTCGGCATCTCGAAGTCAGCTCTCCAGGCCTGGGTACGTGACTCGCGGCTACG
CGAGCACGGACTCGAGCCCTCCCGTGATGTCGAGGAGTCTCGCGCCCAGGCGGCAGCGCTGAAACGCATTCGCGAGCTCGAGAGGGAGAACAAGATCCTC
CGCGAGGCTGCAGCGTATCTCTCGCAAGCGAACTTGAGGCTCGGTGGTCATCACCCCAAATGATGTACCCGCTGGTCCTCGACCCTGCTGCCACCGGGGT
GCCGGTGGCAGTGGCCTGCCGGGTCCTCGGCTTTACCAAGCAGGGCTTCTACAAGTGGTGCGCGAAACCTATCTCTGACCGGGATCTCGAGGAGGCGCAC
TTGATCAATGCCGCCTACGACGTGCATACGGACGATCCCGAGTTCGGGCACCGGTTCATCGCTGATGAACTCCACGCGTGCGGATACGAGGCGTCAGAGC
GTCGTGTGTGGCGGCTGTGCTCGCAGCAGGAACTGTTCTCCCTCACGATCAAACGGGCCCGGAAGCACGGTAAGAAGCCCGGCCCGCCAGTGTGTGATGA
CCTCGTCGAACGCGACTTCTCAGCGTCAGGCATCAACGAACTATGGTTGACCGACATTACCGAGCATCACACCAGTGAGGGGAAACTGTACATGTGCGCG
GTCAAGGATGTGTTCAGCAACAGAATCGTCGGTTATGCCATCGATTCGAGAATGAAATCTCGCCTGGCTGTGGCTGCGATTGATGATGCTGTAGCCCGTC
GTGGCGGACAGCGAGCCGTGGCCGGTTGCGTGGTGCATTCGGATCGCGGGTCGCAATTTCGTTCTCGGAAAATCCAGCAGGTTCTACGGCATTACGGGCT
CGTGGGGTCGATGGGAAGGGTTGGTGCTGCTGGTGATAATGCGGCGATGGAATCGTTCTTCGCCGTGTTGCAGAAGAACGTCCTCGACCGGGGCCGTTGG
GACACGCGAGCGAGGTTGCGCACAGCGATCGTGCACTGGGTCGAACGAACCTATCACCGGAAGCGTCGACAGAGGAGACTGGATAAACTGACCCCGGTTG
AATACGAGCTTGTTCACCACAAGGCCGTCGCTCTGGCGGCATAAACCCTGGAGTCAACTAAACCTTCAGCAGTCCC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 61 | 363 | + | No |
Description : First part of the transposase
ORF sequence :
MPKIYTDEFKQSALELLGEGMTQKQVCADLGISKSALQAWVRDSRLREHGLEPSRDVEESRAQAAALKRIRELERENKILREAAAYLSQANLRLGGHHPK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 228 | 1244 | + | No |
Description : Second part of the transposase
ORF sequence :
CRGVSRPGGSAETHSRAREGEQDPPRGCSVSLASELEARWSSPQMMYPLVLDPAATGVPVAVACRVLGFTKQGFYKWCAKPISDRDLEEAHLINAAYDVH
TDDPEFGHRFIADELHACGYEASERRVWRLCSQQELFSLTIKRARKHGKKPGPPVCDDLVERDFSASGINELWLTDITEHHTSEGKLYMCAVKDVFSNRI
VGYAIDSRMKSRLAVAAIDDAVARRGGQRAVAGCVVHSDRGSQFRSRKIQQVLRHYGLVGSMGRVGAAGDNAAMESFFAVLQKNVLDRGRWDTRARLRTA
IVHWVERTYHRKRRQRRLDKLTPVEYELVHHKAVALAA
TDDPEFGHRFIADELHACGYEASERRVWRLCSQQELFSLTIKRARKHGKKPGPPVCDDLVERDFSASGINELWLTDITEHHTSEGKLYMCAVKDVFSNRI
VGYAIDSRMKSRLAVAAIDDAVARRGGQRAVAGCVVHSDRGSQFRSRKIQQVLRHYGLVGSMGRVGAAGDNAAMESFFAVLQKNVLDRGRWDTRARLRTA
IVHWVERTYHRKRRQRRLDKLTPVEYELVHHKAVALAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1184 bp | 395 aa | 61 | 1244 | + | Yes |
Chemistry : DDE
ORF sequence :
MPKIYTDEFKQSALELLGEGMTQKQVCADLGISKSALQAWVRDSRLREHGLEPSRDVEESRAQAAALKRIRELERENKILREAAAYLSQANLRLGGHHPP
QMMYPLVLDPAATGVPVAVACRVLGFTKQGFYKWCAKPISDRDLEEAHLINAAYDVHTDDPEFGHRFIADELHACGYEASERRVWRLCSQQELFSLTIKR
ARKHGKKPGPPVCDDLVERDFSASGINELWLTDITEHHTSEGKLYMCAVKDVFSNRIVGYAIDSRMKSRLAVAAIDDAVARRGGQRAVAGCVVHSDRGSQ
FRSRKIQQVLRHYGLVGSMGRVGAAGDNAAMESFFAVLQKNVLDRGRWDTRARLRTAIVHWVERTYHRKRRQRRLDKLTPVEYELVHHKAVALAA
QMMYPLVLDPAATGVPVAVACRVLGFTKQGFYKWCAKPISDRDLEEAHLINAAYDVHTDDPEFGHRFIADELHACGYEASERRVWRLCSQQELFSLTIKR
ARKHGKKPGPPVCDDLVERDFSASGINELWLTDITEHHTSEGKLYMCAVKDVFSNRIVGYAIDSRMKSRLAVAAIDDAVARRGGQRAVAGCVVHSDRGSQ
FRSRKIQQVLRHYGLVGSMGRVGAAGDNAAMESFFAVLQKNVLDRGRWDTRARLRTAIVHWVERTYHRKRRQRRLDKLTPVEYELVHHKAVALAA
Blast result :
Comments
ISBli33 is 76% aa similar to ISAar45.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Sebastien Levesque (2017) Direct submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.