ISBli29

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014869 ND Brevibacterium linens
Brevibacterium linens
Brevibacterium linens BS258
Brevibacterium epidermidis BS258
DNA section
IS Length : 4278 bp

Ends


IR Length : 32/38

IRL : TGTGAGTCGCAGCGGTAAGTGGCGTGGTTCTCGCGTCGGTAATTGTCGGC
IRR : TGTGAGTCGCAGCGGTAAATGGCATGGTTTTCACAGCGTTTAGTGACCGA

Insertion site


Left flankDirect repeatRight flankDR Length
ACCGCCATTCCCCCTCGAGG0

DNA sequence

TGTGAGTCGCAGCGGTAAGTGGCGTGGTTCTCGCGTCGGTAATTGTCGGCTACGTCGTTTGCGCTTTAGTGGCGAACCAGTTACATCCGTGTGAGCGGGT
GACGGGGCCCTCAGAGTCCGAATGCTCCGCCGCTGATCAGGATGAAGATACCGAGGCCGATGAGGACAATGGGGAACAGGATGTGTTCCCAGCGTTCAAG
GACTTCGGCGATCGGTGGGCGGGTGGCGACGAACTTGGCCAGCATTACCAGCACCGCGACCAGCGCGAGGAACACGATGCAGTAGGCCACCACCCCGGCC
GGGCCCACGTTGAGGAAGACCGGGACGTAGACGCCGATGTTGTCTCCGCCGTTGGCGAACGTGACCCCGGCCACAGTCCAGACTGCGACGTTCTTGCCTT
CGATCTCGGCGTCATCGTCATCGCCTCCGCACCAGGCCTGCCAGGCAGCCCACAGCCCCAGCCCCAGGGGGATGAGGCCGAAGTACGGGATGACCGCTGG
AGGCAGGAATACTCCGGCCCCCAAGGAGACGAGCACGGCCGCACCCAGGATGCCCACGAACCCCAGGTACTGGCCGGCAAGAATTCGTGCGGTGGTTCCG
CGCTGCCCGGCGCCGCGGGCGAAGAACAGGGAGAGCACGATGATGTCGTCAATATTCGTGGCGATGAACAGGCCGATCGCCTGTAGGGCCGAGGTCAGGA
TCACGTGCCCACCTTTGCTATACCGCATCCGGGAACCGAGCAGGCGGGATCAATGCACGGGGCGTTCTCGTCCACCGCGAGAGTGACGTCGACCAGTGCG
GTGAGCGCCCGCGCCAGGTGCGGATCGGCGATCTTATAGCGCGTCTTGCGCCCCTCGGGCTCGGCGACCACGATGCCGCAGTCGCGCAAGCATGCCAAAT
GGTTGGATACGTTCGAGCGGGTCAGCTCCAGATCGCTGGCTAATTCTGCCGGGTAGGCCGGTCGATCTAGCAGCGTCAGGATAAGTCGTGACCTGGTTGG
GTCGGCCATCGCCCGGCCCAACCGGTTCATCACGTCTAAGCGAGAAGTAATAGTCAGCACTTAGTGAACTATACAGTGGTGGCTGAACCACCGTCAATCC
TTGCCCACTTTCCGGTCGTCCCAGTTCCTTGGTAGTGGGACACCGAAGACGAGCAACCTCATCGATCGGGCCAGAACCTGATTTTCCATCCCATAAGTAA
GGCCCAGAACAACGTCCCATACATTCCGTACAGACACGAAGATTGGTACGCTGGGCGCATGGAATTGGGGTACGCGCGGGTTTCGACGGTCAAACAAGAC
TTGGATCGACAGATCGATGCTCTGACCCAGACCGGAATCGCGGCCGAACGGATCTATGTGGACAAAAAGTCCGGGTCCACGGTCGACCGCCCCGGGCTGC
GTGCAGTCATGGAATATGCCCGCGACGGTGACGTCATCGTCGTCCACACTCTCGATCGGCTTGGGCGAACGGTGCGCGATACTCTGAACCTGATTCATGA
CCTCTCCGAACGCAACATCGGTGTGCGCAACCTCGCCGACCCGATCAGAGTGGACTCGTCGAACCCGGATGATCCGATGGCGCAGCTATCGGTCGTGCTA
CTGGCGTTGTTCGGACAGATGGAACGCACATACACCCTGGAGCGTGCCGCCCACGCTCGAGCGGTAGCGACCGCGAAGGGCCGACGCATCGGACGGCCAT
CAGTGGTGGATCCGGACAAACTGGCCTACGCCGAGCACCTGCGCACGACCGGACACACTATCGCCGAGATCGTGGCCAAAACCGGGATTACCCGTACCAG
CCTGTATCGGCACCTGCCACCGCGTCCTCCCGAAGCGGTGACAGTCGCGCCGGAGACTGCCGCCGATCCCGGTCCCGAGACCTAATCCTGGACCGGTGAT
CGTCATGGCGCAGAGGACCCCAGAGGAGAGGCTGGCTCTGCTGCGCCAGCACGATGACGGTGTCCCTTGGACACGGATCGCGGCCGAATCAGGAGTACCG
GTGCGAACGTTGTCACGCTGGGCCGCGAAGTATGGTGCTTTCCCGACGTCCAATGGCCTGCAGCGCCTCCGGCGAGCTGACAACGGCACGAGGCGAATAC
TGCCCGAGATTGTGGAGATGATCGAAGCTCTGGCGCTTCGTTGCCCCGAGCCCTCAGTCGCGTTTGTTCATCGCCGAGTCAGCGGCATAGCTGCCGATCG
GGGACTGCCCGCGCCAAGCTACTCCAGCGTCCGGGGGATCGTTGGTGCCATCGACCCGGGCCTGCGCACACTCGCCCAGCACGGCGATGCCGCCTACCGG
GACCAGTTCGAATTGGTTTTCCGCCGCACCACATTGAACCCGAACGAACAGTGGCAAGCCGACCACACGCTCTTAGACGTTGCAGTACTCGACCAAGCTG
GCGTGCCGGTTCGGCCGTGGTTGACGGTGCTGCTGGATGACTACTCCCGCGCAGTCGCCGGCTACACCCTCTTCCTGGGTGCCCCATCAGCCGAACAGAC
TGCGCTGGCACTACACCAAGCGGTCAATCAGAAGACGAATCCTGCCTGGCCGGTCTGCGGCCTGCCAGATGTGCTCTATTCCGATCACGGCTCGGACTTC
ACCTCCGTCCGCCTCGAACGGGTTTGCCTGGACACGCAGATACAGCTCATCCACTCACGCATCGGCGTTCCGCAGGGGCGAGGGAAGATCGAGCGGTTCT
ATGGCTCCATCACCACCGAGCTCTTGCCGCACCTACCCGGGTATATCCCGCACGGAACGAACGGAGAACCTCTCACGGACCCGGCGCTCAGTCTTGAGCA
ACTCGACGCGATCCTGGAAAGATTCATTGTCACCGAATACAACCAGCGCCCACACTCCGAAACCCACCAAGCCCCCGTCCACCGCTGGGCAGCTTCCGGC
TTCATACCGCGAGCCCCAGTACGGCCGGAGGATTTGGACCTACTTCTGCTGACTGCGGCGACTACAAGGAAGGTCCAACGCGACGGGATTCAGTTCTCCT
CCACCCGGTATGTGTCCCCGGTGCTGGCCGCCTACGTCGGTGAACAGGTAACTATCCGGTTCGACCCGCGCGATGTCGGCGAGATCCGCGTCTATTTCAA
TGATGATTACCTCTGCCGCGCGATCGCTCCCGAGCTCGCCGCCGAGTCCGTCTCGCTACGAGAGCTGCAGGTTGCCCGGTCACAACGTCGCCGTGACCTC
AAGCGACAGCTGCGCCACCGCCGCAGCCTCGCCGACGCGCTGCCGATTGACAACCGTTATGTCCCGCCTGAACCAACCGAAGCGGAACCGGTCGGCGTCG
ACGAAGTCCCACCACGACACGGATTGCGTCTCTATGCCACCGACTGACCCGAAACACAGTCTCCTCAGCAAGGACGATGATGGAAGCCGATTTCTTTTCG
GCGATTTCGGGGAGATCAATTCCAGCGCCCCGCCACGGCCCGATTTGCCACCGTTCCAGACGACTCATGAGCATCGCCGCTTCGCAGAGTTCGCTGACGC
GGTGCGCACTCATCGCTATATTGGCCTGTGCTGGGGGCCACCGGGGGTCGGCAAGACACTCTCCGCCCGGCACTATTCCGGAGTCGATGACTGGGAACAA
TGGGAATCCTTTTTCTCCGACACCCTCGGCCCTGTGCCGGAACGTGTTCTCGAGGCCCGCACTGCGTTTTTCACTCCCACGGTCGTGGCCACCCCGAAAC
AAATAGACCAGGGCCTGCCCCGAGCATGTCAACGCATCTCCTACGCCGTCGATTTCGCCGAGCACGGCATCGTCGACCCCTACGTCCATACCGAGTCCCG
TTCCAGCGGACGCACCGAGCTGCTCATCATTGACGAAGCCGACCGTCTTAAGGCCACCGGCTTTGAGCAAGTCCGTGACTACTTCGACCATCACCATATG
GGCGTCATCCTCATTGGTATGCCGGGCATCGAGAAACGCCTCGCCCGCTACCCGCAGCTCTACAGCCGTATCGGCTTCGCTCACGAGTACCGCCAGTTGA
GCGCGGACGAACTCACCGCAGTCCTGGCCAGACGACTTCCAGCTGAGGGCGAGGCAACCGATGGTGGCGTCGCCCACGCAACCGCGATCGCGACTATCGT
CCGGATCACCGCTGGCAACTTCCGCCTCGTCGACCGTTTACTCACCCAGATCGAGCGCGTGCAGACCGTGAACGACCTCAACGAGTTGACGCCCGAGGTT
GTCGAGGCAGCTCGGCAGGCTCTCCTCATCGGTCACTAAACGCTGTGAAAACCATGCCATTTACCGCTGCGACTCACA
Protein section
ORF number : 5

 

ORF 2
LengthBeginEndStrandFusion ORF
360 bp119 aa1060701+No
ORF function : Passenger Gene
Annotation : Transcription regulatorDescription : Transcriptional Regulator factor

ORF sequence :

MLTITSRLDVMNRLGRAMADPTRSRLILTLLDRPAYPAELASDLELTRSNVSNHLACLRDCGIVVAEPEGRKTRYKIADPHLARALTALVDVTLAVDENA
PCIDPACSVPGCGIAKVGT

 

Blast result :
ORF 1
LengthBeginEndStrandFusion ORF
594 bp197 aa704111-No
ORF function : Passenger Gene
Annotation : Cadmium transporterDescription :

ORF sequence :

MILTSALQAIGLFIATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFVGILGAAVLVSLGAGVFLPPAVIPYFGLIPLGLGLWAAWQAWCGGDDDDAE
IEGKNVAVWTVAGVTFANGGDNIGVYVPVFLNVGPAGVVAYCIVFLALVAVLVMLAKFVATRPPIAEVLERWEHILFPIVLIGLGIFILISGGAFGL

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
627 bp208 aa12591885+No
ORF function : Passenger Gene
Annotation : ResolvaseDescription :

ORF sequence :

MELGYARVSTVKQDLDRQIDALTQTGIAAERIYVDKKSGSTVDRPGLRAVMEYARDGDVIVVHTLDRLGRTVRDTLNLIHDLSERNIGVRNLADPIRVDS
SNPDDPMAQLSVVLLALFGQMERTYTLERAAHARAVATAKGRRIGRPSVVDPDKLAYAEHLRTTGHTIAEIVAKTGITRTSLYRHLPPRPPEAVTVAPET
AADPGPET

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
1443 bp480 aa19053347+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAQRTPEERLALLRQHDDGVPWTRIAAESGVPVRTLSRWAAKYGAFPTSNGLQRLRRADNGTRRILPEIVEMIEALALRCPEPSVAFVHRRVSGIAADRG
LPAPSYSSVRGIVGAIDPGLRTLAQHGDAAYRDQFELVFRRTTLNPNEQWQADHTLLDVAVLDQAGVPVRPWLTVLLDDYSRAVAGYTLFLGAPSAEQTA
LALHQAVNQKTNPAWPVCGLPDVLYSDHGSDFTSVRLERVCLDTQIQLIHSRIGVPQGRGKIERFYGSITTELLPHLPGYIPHGTNGEPLTDPALSLEQL
DAILERFIVTEYNQRPHSETHQAPVHRWAASGFIPRAPVRPEDLDLLLLTAATTRKVQRDGIQFSSTRYVSPVLAAYVGEQVTIRFDPRDVGEIRVYFND
DYLCRAIAPELAAESVSLRELQVARSQRRRDLKRQLRHRRSLADALPIDNRYVPPEPTEAEPVGVDEVPPRHGLRLYATD

 

Blast result :
ORF 5
LengthBeginEndStrandFusion ORF
795 bp264 aa34454239+No
ORF function : Passenger Gene
Annotation : ATP-binding proteinDescription :

ORF sequence :

MPPFQTTHEHRRFAEFADAVRTHRYIGLCWGPPGVGKTLSARHYSGVDDWEQWESFFSDTLGPVPERVLEARTAFFTPTVVATPKQIDQGLPRACQRISY
AVDFAEHGIVDPYVHTESRSSGRTELLIIDEADRLKATGFEQVRDYFDHHHMGVILIGMPGIEKRLARYPQLYSRIGFAHEYRQLSADELTAVLARRLPA
EGEATDGGVAHATAIATIVRITAGNFRLVDRLLTQIERVQTVNDLNELTPEVVEAARQALLIGH

 

Blast result :
Comments
ISBli29 is 43% (ORF4 : the transposase) aa similar to ISAau5.
References
1] Sebastien Levesque (2017) Direct submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.