ISPcc4
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Pectbacterium carotovorum | Pectbacterium carotovorum 3-2 |
DNA section
IS Length : 1767 bp
Ends
IR Length : 20
IRL : GCCCAGGCTGTGTGAAAACTGCTGATCACTTTTTGGTCTAAGCAGTGGCT
IRR : GCACAGGCTGTGTAAAAACTCGGTTTTTGCATTATCTGAGAGCTATCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCTAATATGACAGGCAGC | CACAAGCAGACGTTGTTAAC | 0 | |
GGCTAAGTTCGACAGTCTGC | CAAAAGCGGACGTTGTTGGC | 0 | |
CTCGTGCCGGCCCTGGCAGA | CGATGCTGGTCAGTGAGAGT | 0 |
DNA sequence
GCCCAGGCTGTGTGAAAACTGCTGATCACTTTTTGGTCTAAGCAGTGGCTTTATATGATCAACCATTCTTGATAAACCCATGCTGAAACCTACTTTATTT
AATAAAATTAGAATCATACGATTAAATATTGCGGGTGAAAAAATGACTCACCACATTAAAGGTCAAGGCAGACATCAGGTGACGTTGCTCCCTGAAGTGC
TGGATGATTTTGTCACAGAAGACAACTCTGTCAGGGTTATTGATGTCTTTGTTGATGAATTACAGCTTGATGCGCTTGGCTTCGAGCGCGTTAATGCAAA
ACAAACCGGGCGGCCTGGATATCACCCCGCAACCATGCTGAAGCTGTACATTTATGGATATCTGAACCGCATTCAGTCATCCCGCAGGTTAGAAAAAGAA
GCCCATCGTAACGTTGAATTGATGTGGTTACTTGAGCGATTAACACCTGATTTTAAAACCATTGCAGACTTCAGAAAAAACAATGGTAAAGGCATCAAAA
ATGCTTGCCGGGCTTTCATTGATCTGTGTCGGCAGATGCAGATGTTCACCGATGTGGTGGTTGCCATTGACGGTAGTAAGTTCAAGGCGGTAAACAGCAA
ATCGAACAACTTCACGCCCCAGAAAACAAAAGGCCACATCGAAAGGGTTGAGCAAAGTATCGCTCTTTACCTGAATAAGCTCGATGAAGCTGACAAGGCT
GCTGAGCCCGAAAAAAATATAGATTTAACCGCTTCAAAACTGGCATGGCTGCAAAAGCGTCTGAAAGAACTCAAGAGAATCCAACAGGCCGTCGTGCAGC
ACCCTGATAAGCAGCTGTCACTAACAGATCCTGATTCCCGGCTGATGAAGATAAACAATGTTAACCGCCAGGTTAGCTATAACGTTCAGACTGCCGTTGA
TGCTAAATATCACCTGATTGTTGCGCATGAAGTAACGAATACACCAGACCGTGGGCAGCTAACAGCGGTGACAAAATTAGCGCAGGACGCTGTTGGCAAA
GCGGATATTACCGTACTGGCTGATAAAGGTTATTACAGCCGGAGTGATATTAAAGCAACGCAGGACTTAGGTGCCGCAGCCTTAGTACCAAAAGGCGATA
CCTCTGGCGCTGACCGCAAAGGTCTTTTCAATCGTTCATTGTTCAAATATGACCAGGAAAAAGATATTTATATTTGCCCGATGGGTAGCGAGCTTCAGAA
CCGATTTACGGTGGTTGAGGATGGTTTAGAACAGCAAATGTACTTTAACAATATGGCCTGTCGTGATTGCAGTCAGCGGTCAAGGTGCACCACATCAAAA
CGCGATCCGAGACGTATAAGGCGCTGGGTTCATGAAGTAGAAATGGAAGACATGCAAGCCAGGCTTAACGCATCGCCACAAACAGCTGTCGTGCGAAAGC
AAACGGTAGAGCATCCGTTCGGGACAATAAAAATGTGGATGGGAGCGACGCACTTCCTGACGAAACGGTTTAAAAACGTCAGCACAGAAATCAGTCTGCA
TGTGCTGGCTTATAACCTGAAAAGGATGATGTCCATCTGGGGTACCGAAGGCTTGGCCATTAAGCTGCGAAAACAATGCAACTAGCTGTAGTGGCTGCTT
TAACCCCTAATAACAAGCCATTAGCACTCCATATCAAGCCAAAAAAGCCTCGTTCTGCCTCTACATACAAATCACAGCGAATACAGTCAATATCAGAAAT
ATCTTGCGTCCCTGACCGGGGATAGCTCTCAGATAATGCAAAAACCGAGTTTTTACACAGCCTGTGC
AATAAAATTAGAATCATACGATTAAATATTGCGGGTGAAAAAATGACTCACCACATTAAAGGTCAAGGCAGACATCAGGTGACGTTGCTCCCTGAAGTGC
TGGATGATTTTGTCACAGAAGACAACTCTGTCAGGGTTATTGATGTCTTTGTTGATGAATTACAGCTTGATGCGCTTGGCTTCGAGCGCGTTAATGCAAA
ACAAACCGGGCGGCCTGGATATCACCCCGCAACCATGCTGAAGCTGTACATTTATGGATATCTGAACCGCATTCAGTCATCCCGCAGGTTAGAAAAAGAA
GCCCATCGTAACGTTGAATTGATGTGGTTACTTGAGCGATTAACACCTGATTTTAAAACCATTGCAGACTTCAGAAAAAACAATGGTAAAGGCATCAAAA
ATGCTTGCCGGGCTTTCATTGATCTGTGTCGGCAGATGCAGATGTTCACCGATGTGGTGGTTGCCATTGACGGTAGTAAGTTCAAGGCGGTAAACAGCAA
ATCGAACAACTTCACGCCCCAGAAAACAAAAGGCCACATCGAAAGGGTTGAGCAAAGTATCGCTCTTTACCTGAATAAGCTCGATGAAGCTGACAAGGCT
GCTGAGCCCGAAAAAAATATAGATTTAACCGCTTCAAAACTGGCATGGCTGCAAAAGCGTCTGAAAGAACTCAAGAGAATCCAACAGGCCGTCGTGCAGC
ACCCTGATAAGCAGCTGTCACTAACAGATCCTGATTCCCGGCTGATGAAGATAAACAATGTTAACCGCCAGGTTAGCTATAACGTTCAGACTGCCGTTGA
TGCTAAATATCACCTGATTGTTGCGCATGAAGTAACGAATACACCAGACCGTGGGCAGCTAACAGCGGTGACAAAATTAGCGCAGGACGCTGTTGGCAAA
GCGGATATTACCGTACTGGCTGATAAAGGTTATTACAGCCGGAGTGATATTAAAGCAACGCAGGACTTAGGTGCCGCAGCCTTAGTACCAAAAGGCGATA
CCTCTGGCGCTGACCGCAAAGGTCTTTTCAATCGTTCATTGTTCAAATATGACCAGGAAAAAGATATTTATATTTGCCCGATGGGTAGCGAGCTTCAGAA
CCGATTTACGGTGGTTGAGGATGGTTTAGAACAGCAAATGTACTTTAACAATATGGCCTGTCGTGATTGCAGTCAGCGGTCAAGGTGCACCACATCAAAA
CGCGATCCGAGACGTATAAGGCGCTGGGTTCATGAAGTAGAAATGGAAGACATGCAAGCCAGGCTTAACGCATCGCCACAAACAGCTGTCGTGCGAAAGC
AAACGGTAGAGCATCCGTTCGGGACAATAAAAATGTGGATGGGAGCGACGCACTTCCTGACGAAACGGTTTAAAAACGTCAGCACAGAAATCAGTCTGCA
TGTGCTGGCTTATAACCTGAAAAGGATGATGTCCATCTGGGGTACCGAAGGCTTGGCCATTAAGCTGCGAAAACAATGCAACTAGCTGTAGTGGCTGCTT
TAACCCCTAATAACAAGCCATTAGCACTCCATATCAAGCCAAAAAAGCCTCGTTCTGCCTCTACATACAAATCACAGCGAATACAGTCAATATCAGAAAT
ATCTTGCGTCCCTGACCGGGGATAGCTCTCAGATAATGCAAAAACCGAGTTTTTACACAGCCTGTGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1506 bp | 501 aa | 80 | 1585 | + | No |
Chemistry : DDE
ORF sequence :
MLKPTLFNKIRIIRLNIAGEKMTHHIKGQGRHQVTLLPEVLDDFVTEDNSVRVIDVFVDELQLDALGFERVNAKQTGRPGYHPATMLKLYIYGYLNRIQS
SRRLEKEAHRNVELMWLLERLTPDFKTIADFRKNNGKGIKNACRAFIDLCRQMQMFTDVVVAIDGSKFKAVNSKSNNFTPQKTKGHIERVEQSIALYLNK
LDEADKAAEPEKNIDLTASKLAWLQKRLKELKRIQQAVVQHPDKQLSLTDPDSRLMKINNVNRQVSYNVQTAVDAKYHLIVAHEVTNTPDRGQLTAVTKL
AQDAVGKADITVLADKGYYSRSDIKATQDLGAAALVPKGDTSGADRKGLFNRSLFKYDQEKDIYICPMGSELQNRFTVVEDGLEQQMYFNNMACRDCSQR
SRCTTSKRDPRRIRRWVHEVEMEDMQARLNASPQTAVVRKQTVEHPFGTIKMWMGATHFLTKRFKNVSTEISLHVLAYNLKRMMSIWGTEGLAIKLRKQC
N
SRRLEKEAHRNVELMWLLERLTPDFKTIADFRKNNGKGIKNACRAFIDLCRQMQMFTDVVVAIDGSKFKAVNSKSNNFTPQKTKGHIERVEQSIALYLNK
LDEADKAAEPEKNIDLTASKLAWLQKRLKELKRIQQAVVQHPDKQLSLTDPDSRLMKINNVNRQVSYNVQTAVDAKYHLIVAHEVTNTPDRGQLTAVTKL
AQDAVGKADITVLADKGYYSRSDIKATQDLGAAALVPKGDTSGADRKGLFNRSLFKYDQEKDIYICPMGSELQNRFTVVEDGLEQQMYFNNMACRDCSQR
SRCTTSKRDPRRIRRWVHEVEMEDMQARLNASPQTAVVRKQTVEHPFGTIKMWMGATHFLTKRFKNVSTEISLHVLAYNLKRMMSIWGTEGLAIKLRKQC
N
Blast result :
Comments
ISPcc4 is 81% aa similar to ISCps6.
References
Yevgeny Nikolaichik (2017) Direct submission to ISfinder