ISPcc4

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Pectbacterium carotovorum
Pectbacterium carotovorum 3-2
DNA section
IS Length : 1767 bp

Ends


IR Length : 20

IRL : GCCCAGGCTGTGTGAAAACTGCTGATCACTTTTTGGTCTAAGCAGTGGCT
IRR : GCACAGGCTGTGTAAAAACTCGGTTTTTGCATTATCTGAGAGCTATCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
TACCTAATATGACAGGCAGCCACAAGCAGACGTTGTTAAC0
GGCTAAGTTCGACAGTCTGCCAAAAGCGGACGTTGTTGGC0
CTCGTGCCGGCCCTGGCAGACGATGCTGGTCAGTGAGAGT0

DNA sequence

GCCCAGGCTGTGTGAAAACTGCTGATCACTTTTTGGTCTAAGCAGTGGCTTTATATGATCAACCATTCTTGATAAACCCATGCTGAAACCTACTTTATTT
AATAAAATTAGAATCATACGATTAAATATTGCGGGTGAAAAAATGACTCACCACATTAAAGGTCAAGGCAGACATCAGGTGACGTTGCTCCCTGAAGTGC
TGGATGATTTTGTCACAGAAGACAACTCTGTCAGGGTTATTGATGTCTTTGTTGATGAATTACAGCTTGATGCGCTTGGCTTCGAGCGCGTTAATGCAAA
ACAAACCGGGCGGCCTGGATATCACCCCGCAACCATGCTGAAGCTGTACATTTATGGATATCTGAACCGCATTCAGTCATCCCGCAGGTTAGAAAAAGAA
GCCCATCGTAACGTTGAATTGATGTGGTTACTTGAGCGATTAACACCTGATTTTAAAACCATTGCAGACTTCAGAAAAAACAATGGTAAAGGCATCAAAA
ATGCTTGCCGGGCTTTCATTGATCTGTGTCGGCAGATGCAGATGTTCACCGATGTGGTGGTTGCCATTGACGGTAGTAAGTTCAAGGCGGTAAACAGCAA
ATCGAACAACTTCACGCCCCAGAAAACAAAAGGCCACATCGAAAGGGTTGAGCAAAGTATCGCTCTTTACCTGAATAAGCTCGATGAAGCTGACAAGGCT
GCTGAGCCCGAAAAAAATATAGATTTAACCGCTTCAAAACTGGCATGGCTGCAAAAGCGTCTGAAAGAACTCAAGAGAATCCAACAGGCCGTCGTGCAGC
ACCCTGATAAGCAGCTGTCACTAACAGATCCTGATTCCCGGCTGATGAAGATAAACAATGTTAACCGCCAGGTTAGCTATAACGTTCAGACTGCCGTTGA
TGCTAAATATCACCTGATTGTTGCGCATGAAGTAACGAATACACCAGACCGTGGGCAGCTAACAGCGGTGACAAAATTAGCGCAGGACGCTGTTGGCAAA
GCGGATATTACCGTACTGGCTGATAAAGGTTATTACAGCCGGAGTGATATTAAAGCAACGCAGGACTTAGGTGCCGCAGCCTTAGTACCAAAAGGCGATA
CCTCTGGCGCTGACCGCAAAGGTCTTTTCAATCGTTCATTGTTCAAATATGACCAGGAAAAAGATATTTATATTTGCCCGATGGGTAGCGAGCTTCAGAA
CCGATTTACGGTGGTTGAGGATGGTTTAGAACAGCAAATGTACTTTAACAATATGGCCTGTCGTGATTGCAGTCAGCGGTCAAGGTGCACCACATCAAAA
CGCGATCCGAGACGTATAAGGCGCTGGGTTCATGAAGTAGAAATGGAAGACATGCAAGCCAGGCTTAACGCATCGCCACAAACAGCTGTCGTGCGAAAGC
AAACGGTAGAGCATCCGTTCGGGACAATAAAAATGTGGATGGGAGCGACGCACTTCCTGACGAAACGGTTTAAAAACGTCAGCACAGAAATCAGTCTGCA
TGTGCTGGCTTATAACCTGAAAAGGATGATGTCCATCTGGGGTACCGAAGGCTTGGCCATTAAGCTGCGAAAACAATGCAACTAGCTGTAGTGGCTGCTT
TAACCCCTAATAACAAGCCATTAGCACTCCATATCAAGCCAAAAAAGCCTCGTTCTGCCTCTACATACAAATCACAGCGAATACAGTCAATATCAGAAAT
ATCTTGCGTCCCTGACCGGGGATAGCTCTCAGATAATGCAAAAACCGAGTTTTTACACAGCCTGTGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1506 bp501 aa801585+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKPTLFNKIRIIRLNIAGEKMTHHIKGQGRHQVTLLPEVLDDFVTEDNSVRVIDVFVDELQLDALGFERVNAKQTGRPGYHPATMLKLYIYGYLNRIQS
SRRLEKEAHRNVELMWLLERLTPDFKTIADFRKNNGKGIKNACRAFIDLCRQMQMFTDVVVAIDGSKFKAVNSKSNNFTPQKTKGHIERVEQSIALYLNK
LDEADKAAEPEKNIDLTASKLAWLQKRLKELKRIQQAVVQHPDKQLSLTDPDSRLMKINNVNRQVSYNVQTAVDAKYHLIVAHEVTNTPDRGQLTAVTKL
AQDAVGKADITVLADKGYYSRSDIKATQDLGAAALVPKGDTSGADRKGLFNRSLFKYDQEKDIYICPMGSELQNRFTVVEDGLEQQMYFNNMACRDCSQR
SRCTTSKRDPRRIRRWVHEVEMEDMQARLNASPQTAVVRKQTVEHPFGTIKMWMGATHFLTKRFKNVSTEISLHVLAYNLKRMMSIWGTEGLAIKLRKQC
N

 

Blast result :
Comments
ISPcc4 is 81% aa similar to ISCps6.
References
Yevgeny Nikolaichik (2017) Direct submission to ISfinder