ISPcc3

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pectobacterium carotovorum
Pectobacterium carotovorum 3-2
DNA section
IS Length : 1427 bp

Ends


IR Length : 17/20

IRL : TAATGCCGATCAGTTAAGGATCGGTTGATCGATCCAGTGGTTGTGTAAAA
IRR : TAATGCCAGTCAGTTAAGCAACTGACTGGCTGGTTTTCTCCAAGCCTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTAGAGACAAAAATGGCGGGTCTATTTAGCCCGCCATTTTTTTACGTTGTGCA14
TTACATAAAAGAGAAAAGCGGAGCCAGTGCGCTCCGCTTTTTTATGCTTTAGCC14
GTGGCGCAGGAAAAAAACGGCTGGTCTTGTGTGTGGCATTTTGGCAAGCAATC13

DNA sequence

TAATGCCGATCAGTTAAGGATCGGTTGATCGATCCAGTGGTTGTGTAAAAATCCGGAAATACTTACCCATTTCCGGATTTTTTATGCACATTGGACAGGC
TCTTGATCTCGTCTCCCGCTACAATTCATTACGTAATCCGATGACCTCTCTTGCCGATTTTCTTGACCCAGAACTTATTGCTCGTTGCCTTGCTGAGTCC
GGCACGGTCACTCTGCGCAAACGCCGCCTTCCTCTGGAAATGATGGTCTGGTGTATCGTCGGTATGGCACTCGAACGTAAAGAGCCCCTGCATCAGATTG
TTAACCGGCTGGATATCATGCTGCCGGGGAATCGCCCCTTCGTCGCCCCCAGCGCTGTTATCCAGGCACGCCAGAGACTGGGAAGCGAGGCTGTTCGCCG
TGTGTTCACACAAACCGCACAACTGTGGCACAACGCCACGACTCATCCACACTGGTGCGGCCTCACCCTATTGGCGGTAGACGGTGTGGTCTGGCGCACC
CCGGACACACCGGAAAACGATAGGGCCTTTCCCCGACAAACTTATGCCGGGCAACCCGGGTTATATCCTCAGGTAAAAATGGTCTGTCAGATGGAGCTGA
CCAGCCATCTGCTAACCGCAGCGGTATTCGGCACGATGAAAGACAGCGAATGCACGCTGGCTGAGCAACTGATAGTACAGACCGGGGATAACACACTGAC
ACTACTGGATAAAGGCTACTACTCGCTGGGTCTGCTGAACGCCTGGAGTCAGGCGGGAGAGCATCGTCACTGGATGATACCGCTGAGGAAAGGTGCGCAG
TATGAAGTGATACGAAAGCTGGGGAAAAGCGACCATCTGGTGAAACTGAAAACGAGTCCGCAGGCCCGCAAGAAATGGCCTGGTCTGGGAGATGAACTGA
CCGCCCGACTGCTGACCCTCACCCGGAAGGGGAAAGTCTACTATCTGCTGACCTCAATGACGGATGCGATGCGTTATCCAGGCGGAGAGATGGCTGACTT
GTACAGTCATCGTTGGGAAATCGAACTGGGTTACAGTGAGATAAAACAGACGATGCAACTGAACAGACTGACCGTGAGGAGTAAGAAGCCGGAACTGGTT
GAACAGGAACTGTGGGGCGTGCTGCTTGCCTATAATCTGGTGCGTTATCAGATGATTAAAATGGCAGGTCATCTGAAAGGATACTGGCCGAACCAGTTGA
GCTTTAGCGAATCGAGCGGTCTGGTCATGAGAATGCTGATGACGCTACAGGGCGCTTCACCGGGCCGAATCCCGGAACTGTTGCGGGACCTGGAGAGTCT
TGCGCAGTTGGTAAAACTCCCCGCCAGAAGAGAAAGGGCCTTCCCGAGAGTGGTGAAGGAAAGGCCGCAGAAATACGGCAAGGCTTGGAGAAAACCAGCC
AGTCAGTTGCTTAACTGACTGGCATTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa841418+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHIGQALDLVSRYNSLRNPMTSLADFLDPELIARCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLG
SEAVRRVFTQTAQLWHNATTHPHWCGLTLLAVDGVVWRTPDTPENDRAFPRQTYAGQPGLYPQVKMVCQMELTSHLLTAAVFGTMKDSECTLAEQLIVQT
GDNTLTLLDKGYYSLGLLNAWSQAGEHRHWMIPLRKGAQYEVIRKLGKSDHLVKLKTSPQARKKWPGLGDELTARLLTLTRKGKVYYLLTSMTDAMRYPG
GEMADLYSHRWEIELGYSEIKQTMQLNRLTVRSKKPELVEQELWGVLLAYNLVRYQMIKMAGHLKGYWPNQLSFSESSGLVMRMLMTLQGASPGRIPELL
RDLESLAQLVKLPARRERAFPRVVKERPQKYGKAWRKPASQLLN

 

Blast result :
Comments
ISPcc3 is 94% aa similar to IS4.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder