ISPcc3
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pectobacterium carotovorum | Pectobacterium carotovorum 3-2 |
DNA section
IS Length : 1427 bp
Ends
IR Length : 17/20
IRL : TAATGCCGATCAGTTAAGGATCGGTTGATCGATCCAGTGGTTGTGTAAAA
IRR : TAATGCCAGTCAGTTAAGCAACTGACTGGCTGGTTTTCTCCAAGCCTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTAGAGACAAAAATGGCGG | GTCTATTTAGCCCG | CCATTTTTTTACGTTGTGCA | 14 |
TTACATAAAAGAGAAAAGCG | GAGCCAGTGCGCTC | CGCTTTTTTATGCTTTAGCC | 14 |
GTGGCGCAGGAAAAAAACGG | CTGGTCTTGTGTG | TGGCATTTTGGCAAGCAATC | 13 |
DNA sequence
TAATGCCGATCAGTTAAGGATCGGTTGATCGATCCAGTGGTTGTGTAAAAATCCGGAAATACTTACCCATTTCCGGATTTTTTATGCACATTGGACAGGC
TCTTGATCTCGTCTCCCGCTACAATTCATTACGTAATCCGATGACCTCTCTTGCCGATTTTCTTGACCCAGAACTTATTGCTCGTTGCCTTGCTGAGTCC
GGCACGGTCACTCTGCGCAAACGCCGCCTTCCTCTGGAAATGATGGTCTGGTGTATCGTCGGTATGGCACTCGAACGTAAAGAGCCCCTGCATCAGATTG
TTAACCGGCTGGATATCATGCTGCCGGGGAATCGCCCCTTCGTCGCCCCCAGCGCTGTTATCCAGGCACGCCAGAGACTGGGAAGCGAGGCTGTTCGCCG
TGTGTTCACACAAACCGCACAACTGTGGCACAACGCCACGACTCATCCACACTGGTGCGGCCTCACCCTATTGGCGGTAGACGGTGTGGTCTGGCGCACC
CCGGACACACCGGAAAACGATAGGGCCTTTCCCCGACAAACTTATGCCGGGCAACCCGGGTTATATCCTCAGGTAAAAATGGTCTGTCAGATGGAGCTGA
CCAGCCATCTGCTAACCGCAGCGGTATTCGGCACGATGAAAGACAGCGAATGCACGCTGGCTGAGCAACTGATAGTACAGACCGGGGATAACACACTGAC
ACTACTGGATAAAGGCTACTACTCGCTGGGTCTGCTGAACGCCTGGAGTCAGGCGGGAGAGCATCGTCACTGGATGATACCGCTGAGGAAAGGTGCGCAG
TATGAAGTGATACGAAAGCTGGGGAAAAGCGACCATCTGGTGAAACTGAAAACGAGTCCGCAGGCCCGCAAGAAATGGCCTGGTCTGGGAGATGAACTGA
CCGCCCGACTGCTGACCCTCACCCGGAAGGGGAAAGTCTACTATCTGCTGACCTCAATGACGGATGCGATGCGTTATCCAGGCGGAGAGATGGCTGACTT
GTACAGTCATCGTTGGGAAATCGAACTGGGTTACAGTGAGATAAAACAGACGATGCAACTGAACAGACTGACCGTGAGGAGTAAGAAGCCGGAACTGGTT
GAACAGGAACTGTGGGGCGTGCTGCTTGCCTATAATCTGGTGCGTTATCAGATGATTAAAATGGCAGGTCATCTGAAAGGATACTGGCCGAACCAGTTGA
GCTTTAGCGAATCGAGCGGTCTGGTCATGAGAATGCTGATGACGCTACAGGGCGCTTCACCGGGCCGAATCCCGGAACTGTTGCGGGACCTGGAGAGTCT
TGCGCAGTTGGTAAAACTCCCCGCCAGAAGAGAAAGGGCCTTCCCGAGAGTGGTGAAGGAAAGGCCGCAGAAATACGGCAAGGCTTGGAGAAAACCAGCC
AGTCAGTTGCTTAACTGACTGGCATTA
TCTTGATCTCGTCTCCCGCTACAATTCATTACGTAATCCGATGACCTCTCTTGCCGATTTTCTTGACCCAGAACTTATTGCTCGTTGCCTTGCTGAGTCC
GGCACGGTCACTCTGCGCAAACGCCGCCTTCCTCTGGAAATGATGGTCTGGTGTATCGTCGGTATGGCACTCGAACGTAAAGAGCCCCTGCATCAGATTG
TTAACCGGCTGGATATCATGCTGCCGGGGAATCGCCCCTTCGTCGCCCCCAGCGCTGTTATCCAGGCACGCCAGAGACTGGGAAGCGAGGCTGTTCGCCG
TGTGTTCACACAAACCGCACAACTGTGGCACAACGCCACGACTCATCCACACTGGTGCGGCCTCACCCTATTGGCGGTAGACGGTGTGGTCTGGCGCACC
CCGGACACACCGGAAAACGATAGGGCCTTTCCCCGACAAACTTATGCCGGGCAACCCGGGTTATATCCTCAGGTAAAAATGGTCTGTCAGATGGAGCTGA
CCAGCCATCTGCTAACCGCAGCGGTATTCGGCACGATGAAAGACAGCGAATGCACGCTGGCTGAGCAACTGATAGTACAGACCGGGGATAACACACTGAC
ACTACTGGATAAAGGCTACTACTCGCTGGGTCTGCTGAACGCCTGGAGTCAGGCGGGAGAGCATCGTCACTGGATGATACCGCTGAGGAAAGGTGCGCAG
TATGAAGTGATACGAAAGCTGGGGAAAAGCGACCATCTGGTGAAACTGAAAACGAGTCCGCAGGCCCGCAAGAAATGGCCTGGTCTGGGAGATGAACTGA
CCGCCCGACTGCTGACCCTCACCCGGAAGGGGAAAGTCTACTATCTGCTGACCTCAATGACGGATGCGATGCGTTATCCAGGCGGAGAGATGGCTGACTT
GTACAGTCATCGTTGGGAAATCGAACTGGGTTACAGTGAGATAAAACAGACGATGCAACTGAACAGACTGACCGTGAGGAGTAAGAAGCCGGAACTGGTT
GAACAGGAACTGTGGGGCGTGCTGCTTGCCTATAATCTGGTGCGTTATCAGATGATTAAAATGGCAGGTCATCTGAAAGGATACTGGCCGAACCAGTTGA
GCTTTAGCGAATCGAGCGGTCTGGTCATGAGAATGCTGATGACGCTACAGGGCGCTTCACCGGGCCGAATCCCGGAACTGTTGCGGGACCTGGAGAGTCT
TGCGCAGTTGGTAAAACTCCCCGCCAGAAGAGAAAGGGCCTTCCCGAGAGTGGTGAAGGAAAGGCCGCAGAAATACGGCAAGGCTTGGAGAAAACCAGCC
AGTCAGTTGCTTAACTGACTGGCATTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 84 | 1418 | + | No |
Chemistry : DDE
ORF sequence :
MHIGQALDLVSRYNSLRNPMTSLADFLDPELIARCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLG
SEAVRRVFTQTAQLWHNATTHPHWCGLTLLAVDGVVWRTPDTPENDRAFPRQTYAGQPGLYPQVKMVCQMELTSHLLTAAVFGTMKDSECTLAEQLIVQT
GDNTLTLLDKGYYSLGLLNAWSQAGEHRHWMIPLRKGAQYEVIRKLGKSDHLVKLKTSPQARKKWPGLGDELTARLLTLTRKGKVYYLLTSMTDAMRYPG
GEMADLYSHRWEIELGYSEIKQTMQLNRLTVRSKKPELVEQELWGVLLAYNLVRYQMIKMAGHLKGYWPNQLSFSESSGLVMRMLMTLQGASPGRIPELL
RDLESLAQLVKLPARRERAFPRVVKERPQKYGKAWRKPASQLLN
SEAVRRVFTQTAQLWHNATTHPHWCGLTLLAVDGVVWRTPDTPENDRAFPRQTYAGQPGLYPQVKMVCQMELTSHLLTAAVFGTMKDSECTLAEQLIVQT
GDNTLTLLDKGYYSLGLLNAWSQAGEHRHWMIPLRKGAQYEVIRKLGKSDHLVKLKTSPQARKKWPGLGDELTARLLTLTRKGKVYYLLTSMTDAMRYPG
GEMADLYSHRWEIELGYSEIKQTMQLNRLTVRSKKPELVEQELWGVLLAYNLVRYQMIKMAGHLKGYWPNQLSFSESSGLVMRMLMTLQGASPGRIPELL
RDLESLAQLVKLPARRERAFPRVVKERPQKYGKAWRKPASQLLN
Blast result :
Comments
ISPcc3 is 94% aa similar to IS4.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder