ISPcc2
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Pectobacterium carotovorum | Pectobacterium carotovorum 3-2 |
DNA section
IS Length : 1309 bp
Ends
IR Length : 17/19
IRL : GGTTCATCGCGCTTAAGCGTGAACCAATAGAAAACGGCGGTAAAAGTGGT
IRR : GGTTCATCGCGCTTTACCGGGGAACGCTGCTTTAATTTTCAGGAAGAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAGGAAAAAGATCGGGAATCAGGTATAATTTACTGAATTTAAGGCA | TAAAAAAA | GCCACCCTAAGGTGACTTGATTTTCATACAATGGTGCGAAGGCCGGA | 8 |
DNA sequence
GGTTCATCGCGCTTAAGCGTGAACCAATAGAAAACGGCGGTAAAAGTGGTTAGTTTTGTATTCGCCAAAACACTAACCGACCACTCAACCGCCGTCTGCC
ATGAATGCTAACCTCTCTTCCCTTTTCTGGGAAGGCTTTACCGTTGACTCCTTTTCCCATTCCTCATCTGATGCGCTGCTTATTACGCTTCGCCCAGAAC
CCAGTTTTACACCCCAGTGCCGCCGGTGTGGCCGAAGAGACTGTGCCGTTCATGATGTCTCTGTACGTCAGGTTCGTGAGCGGGATTTGCTGCACTGGCG
CGTCACGCTTCTGGTTCCTGTTCGTCGTCTTCGCTGCGCCTGCTGCGGTGTTGCCACCGAACGTATCTCCTGGTTGCCTGAGAGGCAGCGTTACACCTCT
ACATTATCAGTCTGGGTTGAGTCTCTTAGCCGTCTACTCCCCGTGAAGCACGTAGCACAGCTGACTGGCCTGCACTGGCACACCATCAAGAATATCGACC
TCCGCCGTTTGCGTCGGGAATTGCAGGAGCCAGAGCGACATACACTTCGTCGCCTGATAATGGATGAGTTCGCCCTGTTTAAAGGTCATCGCTATGCCAC
TGTGGTCGTGGACGCTGATACGCAGCAGGTGCTGTGGGTCGGGGAAGGTCGCAGCCGCGCGGCCTTCCGCCCGTTCTTCACCTGGCTGGGACCGGAAGGC
TGCGCGGCTATCGAGTCTGTCGCAATGGACATGAACACGGCGCTGGACCTTGAAGTCAGGGAGCAATGCCCACAGGCGGAAGTGGTCTATGACTTGTTCC
ACGTGGTGGCGAAGTTCGGTCGCGAGGTCATCGACAGGGTGCGGGTTGACCAGGCGAATCAGCTACGTGACAACGCGAAAGCCCGGAAGGTTATCAAGCG
CAGTCGCTGGCTGTTGCTGCGTAACGCTGAAAATCTGCCAGCAGGTCATGATGTAAAGCTAGCAGAGTTGCTGGAGGCAAACCAGCCGCTGAACACCGTG
TACGTGATGAAAACTGCGCTGAAAGAGCTGTGGTATGCGCCGGATAAGGAGGTCGCCCGGCATCGCTGGGATGAATGGTACAGGCAGTCTCAGGAGAGCG
ATATAAAAGCGCTGCAGCAGTTTGCAGATAAGCTCAAGGGCTACGTGAGCGGGATAATCGCCAGTGCTGAACATCGTCTGAATACGAGTGTGCTGGAGGG
GATGAATAACAAAATCAAGGTACTAAAGCGAATGGCTTATGGATACCGGGATAACGACTACTTCTTCCTGAAAATTAAAGCAGCGTTCCCCGGTAAAGCG
CGATGAACC
ATGAATGCTAACCTCTCTTCCCTTTTCTGGGAAGGCTTTACCGTTGACTCCTTTTCCCATTCCTCATCTGATGCGCTGCTTATTACGCTTCGCCCAGAAC
CCAGTTTTACACCCCAGTGCCGCCGGTGTGGCCGAAGAGACTGTGCCGTTCATGATGTCTCTGTACGTCAGGTTCGTGAGCGGGATTTGCTGCACTGGCG
CGTCACGCTTCTGGTTCCTGTTCGTCGTCTTCGCTGCGCCTGCTGCGGTGTTGCCACCGAACGTATCTCCTGGTTGCCTGAGAGGCAGCGTTACACCTCT
ACATTATCAGTCTGGGTTGAGTCTCTTAGCCGTCTACTCCCCGTGAAGCACGTAGCACAGCTGACTGGCCTGCACTGGCACACCATCAAGAATATCGACC
TCCGCCGTTTGCGTCGGGAATTGCAGGAGCCAGAGCGACATACACTTCGTCGCCTGATAATGGATGAGTTCGCCCTGTTTAAAGGTCATCGCTATGCCAC
TGTGGTCGTGGACGCTGATACGCAGCAGGTGCTGTGGGTCGGGGAAGGTCGCAGCCGCGCGGCCTTCCGCCCGTTCTTCACCTGGCTGGGACCGGAAGGC
TGCGCGGCTATCGAGTCTGTCGCAATGGACATGAACACGGCGCTGGACCTTGAAGTCAGGGAGCAATGCCCACAGGCGGAAGTGGTCTATGACTTGTTCC
ACGTGGTGGCGAAGTTCGGTCGCGAGGTCATCGACAGGGTGCGGGTTGACCAGGCGAATCAGCTACGTGACAACGCGAAAGCCCGGAAGGTTATCAAGCG
CAGTCGCTGGCTGTTGCTGCGTAACGCTGAAAATCTGCCAGCAGGTCATGATGTAAAGCTAGCAGAGTTGCTGGAGGCAAACCAGCCGCTGAACACCGTG
TACGTGATGAAAACTGCGCTGAAAGAGCTGTGGTATGCGCCGGATAAGGAGGTCGCCCGGCATCGCTGGGATGAATGGTACAGGCAGTCTCAGGAGAGCG
ATATAAAAGCGCTGCAGCAGTTTGCAGATAAGCTCAAGGGCTACGTGAGCGGGATAATCGCCAGTGCTGAACATCGTCTGAATACGAGTGTGCTGGAGGG
GATGAATAACAAAATCAAGGTACTAAAGCGAATGGCTTATGGATACCGGGATAACGACTACTTCTTCCTGAAAATTAAAGCAGCGTTCCCCGGTAAAGCG
CGATGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1 bp | 0 aa | 0 | 0 | + | No |
Chemistry : Unknow
ORF sequence :
MNANLSSLFWEGFTVDSFSHSSSDALLITLRPEPSFTPQCRRCGRRDCAVHDVSVRQVRERDLLHWRVTLLVPVRRLRCACCGVATERISWLPERQRYTS
TLSVWVESLSRLLPVKHVAQLTGLHWHTIKNIDLRRLRRELQEPERHTLRRLIMDEFALFKGHRYATVVVDADTQQVLWVGEGRSRAAFRPFFTWLGPEG
CAAIESVAMDMNTALDLEVREQCPQAEVVYDLFHVVAKFGREVIDRVRVDQANQLRDNAKARKVIKRSRWLLLRNAENLPAGHDVKLAELLEANQPLNTV
YVMKTALKELWYAPDKEVARHRWDEWYRQSQESDIKALQQFADKLKGYVSGIIASAEHRLNTSVLEGMNNKIKVLKRMAYGYRDNDYFFLKIKAAFPGKA
R
TLSVWVESLSRLLPVKHVAQLTGLHWHTIKNIDLRRLRRELQEPERHTLRRLIMDEFALFKGHRYATVVVDADTQQVLWVGEGRSRAAFRPFFTWLGPEG
CAAIESVAMDMNTALDLEVREQCPQAEVVYDLFHVVAKFGREVIDRVRVDQANQLRDNAKARKVIKRSRWLLLRNAENLPAGHDVKLAELLEANQPLNTV
YVMKTALKELWYAPDKEVARHRWDEWYRQSQESDIKALQQFADKLKGYVSGIIASAEHRLNTSVLEGMNNKIKVLKRMAYGYRDNDYFFLKIKAAFPGKA
R
Blast result :
Comments
ISPcc2 transposase is 74% aa similar to the transposase of ISAba43.
Movement of ISPcc2 has been detected in a lab derivative of the wild type strain.
Movement of ISPcc2 has been detected in a lab derivative of the wild type strain.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder