ISPcc2

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Pectobacterium carotovorum
Pectobacterium carotovorum 3-2
DNA section
IS Length : 1309 bp

Ends


IR Length : 17/19

IRL : GGTTCATCGCGCTTAAGCGTGAACCAATAGAAAACGGCGGTAAAAGTGGT
IRR : GGTTCATCGCGCTTTACCGGGGAACGCTGCTTTAATTTTCAGGAAGAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGAGGAAAAAGATCGGGAATCAGGTATAATTTACTGAATTTAAGGCATAAAAAAAGCCACCCTAAGGTGACTTGATTTTCATACAATGGTGCGAAGGCCGGA8

DNA sequence

GGTTCATCGCGCTTAAGCGTGAACCAATAGAAAACGGCGGTAAAAGTGGTTAGTTTTGTATTCGCCAAAACACTAACCGACCACTCAACCGCCGTCTGCC
ATGAATGCTAACCTCTCTTCCCTTTTCTGGGAAGGCTTTACCGTTGACTCCTTTTCCCATTCCTCATCTGATGCGCTGCTTATTACGCTTCGCCCAGAAC
CCAGTTTTACACCCCAGTGCCGCCGGTGTGGCCGAAGAGACTGTGCCGTTCATGATGTCTCTGTACGTCAGGTTCGTGAGCGGGATTTGCTGCACTGGCG
CGTCACGCTTCTGGTTCCTGTTCGTCGTCTTCGCTGCGCCTGCTGCGGTGTTGCCACCGAACGTATCTCCTGGTTGCCTGAGAGGCAGCGTTACACCTCT
ACATTATCAGTCTGGGTTGAGTCTCTTAGCCGTCTACTCCCCGTGAAGCACGTAGCACAGCTGACTGGCCTGCACTGGCACACCATCAAGAATATCGACC
TCCGCCGTTTGCGTCGGGAATTGCAGGAGCCAGAGCGACATACACTTCGTCGCCTGATAATGGATGAGTTCGCCCTGTTTAAAGGTCATCGCTATGCCAC
TGTGGTCGTGGACGCTGATACGCAGCAGGTGCTGTGGGTCGGGGAAGGTCGCAGCCGCGCGGCCTTCCGCCCGTTCTTCACCTGGCTGGGACCGGAAGGC
TGCGCGGCTATCGAGTCTGTCGCAATGGACATGAACACGGCGCTGGACCTTGAAGTCAGGGAGCAATGCCCACAGGCGGAAGTGGTCTATGACTTGTTCC
ACGTGGTGGCGAAGTTCGGTCGCGAGGTCATCGACAGGGTGCGGGTTGACCAGGCGAATCAGCTACGTGACAACGCGAAAGCCCGGAAGGTTATCAAGCG
CAGTCGCTGGCTGTTGCTGCGTAACGCTGAAAATCTGCCAGCAGGTCATGATGTAAAGCTAGCAGAGTTGCTGGAGGCAAACCAGCCGCTGAACACCGTG
TACGTGATGAAAACTGCGCTGAAAGAGCTGTGGTATGCGCCGGATAAGGAGGTCGCCCGGCATCGCTGGGATGAATGGTACAGGCAGTCTCAGGAGAGCG
ATATAAAAGCGCTGCAGCAGTTTGCAGATAAGCTCAAGGGCTACGTGAGCGGGATAATCGCCAGTGCTGAACATCGTCTGAATACGAGTGTGCTGGAGGG
GATGAATAACAAAATCAAGGTACTAAAGCGAATGGCTTATGGATACCGGGATAACGACTACTTCTTCCTGAAAATTAAAGCAGCGTTCCCCGGTAAAGCG
CGATGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1 bp0 aa00+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNANLSSLFWEGFTVDSFSHSSSDALLITLRPEPSFTPQCRRCGRRDCAVHDVSVRQVRERDLLHWRVTLLVPVRRLRCACCGVATERISWLPERQRYTS
TLSVWVESLSRLLPVKHVAQLTGLHWHTIKNIDLRRLRRELQEPERHTLRRLIMDEFALFKGHRYATVVVDADTQQVLWVGEGRSRAAFRPFFTWLGPEG
CAAIESVAMDMNTALDLEVREQCPQAEVVYDLFHVVAKFGREVIDRVRVDQANQLRDNAKARKVIKRSRWLLLRNAENLPAGHDVKLAELLEANQPLNTV
YVMKTALKELWYAPDKEVARHRWDEWYRQSQESDIKALQQFADKLKGYVSGIIASAEHRLNTSVLEGMNNKIKVLKRMAYGYRDNDYFFLKIKAAFPGKA
R

 

Blast result :
Comments
ISPcc2 transposase is 74% aa similar to the transposase of ISAba43.
Movement of ISPcc2 has been detected in a lab derivative of the wild type strain.
References
1] Yevgeny Nikolaichik (2017) Direct submission to ISfinder