ISPcc1

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pectobacterium carotovorum
Pectobacterium carotovorum 3-2
Pectobacterium carotovorum SCC1
DNA section
IS Length : 1281 bp

Ends


IR Length : 15/18

IRL : CTGACGGCTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTT
IRR : CTGAGGGATCCCCAGAAACATCATCAATACACCATGATGATGTTTCGATA

Insertion site


Left flankDirect repeatRight flankDR Length
GACGCTATTTCCACTATTGGGGAAAAGCAAAAAGATCGGCGGATGCGCTGGAGGGGGATGATTATCATCTTCTGCCTTATCACGGTTTGGATGTGGCCGCC9
AAGGAAATGGGGCTTTCGCCGGCTAACGCCCCATTCTTAA0

DNA sequence

CTGACGGCTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTTAGTGTTCCACCAAAAAGTAAGGTCACTCCTCTATGCCTGCTTCACAAGTT
TGCCATAAATTTTTCAGTCAGTCCCTCAACTCACTTCATCAGTACCGTAAAAACGCCCTGCTCGATATGACTGTTGCCCTGACGCGCGGCGCATCACTCT
CACTGACCAGCATCGGCAGATATCTGCCAGGGCCGGCACGAGTTAAGCATAAGATTAAGCGTGTTGACCGGCATCTCAACAGCGATCTGATGTTCAGCGA
TATTCCCACCGTCTACCGGCAGCTTGTATCCCGCCTCACGCGCGGCCTTTCATTATGTGTTATTGCTGTGGACTGGAGCGGCTATCCATCATCGGAACTC
AGCGTTTTACGGGCAAGTTTATTATGCGATGGCAGAGCTATCCCGCTGATGAGTAAAGTCGTTTCCTCTCAATACCAGAATAACTCTACCGTCCAGAACG
ACTTTCTCGATCAGATGGCTGCCGCCATCGGCAAAGATAAACAGGTCATTGTCGTGACCGATGCAGGCTTTCGTAGCAGCTGGTTTCACCATATTCGCTT
TCTGGGCTGGCATTTTGTCGGACGTGTCAGAGGTAGCCTCTACTTTCAGATAGCCGGGGATGAAGGATGGCAGATGGCGCGGGATATCACGTCAGTTGCT
AAGCCATGCTATCTGGGATTTGGGCGACTGGCGCGCAGCGCCAGCCGTGACTGCCTCGGGCATTTCTATACGGTTCATAAGCGGGCCACGGGCAGGAAAG
GCAGCCAGCGCTTCCCTAAAACGGACAGGATGTACCGTAAAAATGCGCGCGAACCGTGGCTGCTTTTTACCAGCCTGATGGGATATAAACCACGTGAGAT
AGTCAAAATTTACAGTCGCCGTATGCAGATAGAGCAGAACTTTAGAGATGAGAAAAGTGAACGTTATGGCCTGGGGCTGCGGGCAAGTAAAAGCCGGGGA
GAAAAGCGACTATCCGTGCTTTGTCTGGTCGCAACGCTCTACAGCATCATCATGTGGCTGACGGGATACTACCTTGAAAGTAAGGGGATAAATCGATGGT
TTCAGGCGAACAGTGAGAAATCACGAAGGGTATTGTCGTATCTGACGTTGAGTGAAAATGTCATCCGGCAGTCGCCGGGACTCCTGTCGGGAATGAACCC
CGACAGGGTTTATGCAGACATAGTGAGAGCCTATCGAAACATCATCATGGTGTATTGATGATGTTTCTGGGGATCCCTCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1176 bp391 aa831258+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPASQVCHKFFSQSLNSLHQYRKNALLDMTVALTRGASLSLTSIGRYLPGPARVKHKIKRVDRHLNSDLMFSDIPTVYRQLVSRLTRGLSLCVIAVDWSG
YPSSELSVLRASLLCDGRAIPLMSKVVSSQYQNNSTVQNDFLDQMAAAIGKDKQVIVVTDAGFRSSWFHHIRFLGWHFVGRVRGSLYFQIAGDEGWQMAR
DITSVAKPCYLGFGRLARSASRDCLGHFYTVHKRATGRKGSQRFPKTDRMYRKNAREPWLLFTSLMGYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRLSVLCLVATLYSIIMWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADIVRAYRNIIMVY

 

Blast result :
Comments
ISPcc1 is 95% aa similar to ISCro2.
References
Yevgeny Nikolaichik (2017) Direct submission to ISfinder