ISPcc1
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pectobacterium carotovorum | Pectobacterium carotovorum 3-2 Pectobacterium carotovorum SCC1 |
DNA section
IS Length : 1281 bp
Ends
IR Length : 15/18
IRL : CTGACGGCTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTT
IRR : CTGAGGGATCCCCAGAAACATCATCAATACACCATGATGATGTTTCGATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGCTATTTCCACTATTGGGGAAAAGCAAAAAGATCGGCGGATGC | GCTGGAGGG | GGATGATTATCATCTTCTGCCTTATCACGGTTTGGATGTGGCCGCC | 9 |
AAGGAAATGGGGCTTTCGCC | GGCTAACGCCCCATTCTTAA | 0 |
DNA sequence
CTGACGGCTCCCCATAAATAAAGACAGGCATAGAAGGTTGTGATCTACTTAGTGTTCCACCAAAAAGTAAGGTCACTCCTCTATGCCTGCTTCACAAGTT
TGCCATAAATTTTTCAGTCAGTCCCTCAACTCACTTCATCAGTACCGTAAAAACGCCCTGCTCGATATGACTGTTGCCCTGACGCGCGGCGCATCACTCT
CACTGACCAGCATCGGCAGATATCTGCCAGGGCCGGCACGAGTTAAGCATAAGATTAAGCGTGTTGACCGGCATCTCAACAGCGATCTGATGTTCAGCGA
TATTCCCACCGTCTACCGGCAGCTTGTATCCCGCCTCACGCGCGGCCTTTCATTATGTGTTATTGCTGTGGACTGGAGCGGCTATCCATCATCGGAACTC
AGCGTTTTACGGGCAAGTTTATTATGCGATGGCAGAGCTATCCCGCTGATGAGTAAAGTCGTTTCCTCTCAATACCAGAATAACTCTACCGTCCAGAACG
ACTTTCTCGATCAGATGGCTGCCGCCATCGGCAAAGATAAACAGGTCATTGTCGTGACCGATGCAGGCTTTCGTAGCAGCTGGTTTCACCATATTCGCTT
TCTGGGCTGGCATTTTGTCGGACGTGTCAGAGGTAGCCTCTACTTTCAGATAGCCGGGGATGAAGGATGGCAGATGGCGCGGGATATCACGTCAGTTGCT
AAGCCATGCTATCTGGGATTTGGGCGACTGGCGCGCAGCGCCAGCCGTGACTGCCTCGGGCATTTCTATACGGTTCATAAGCGGGCCACGGGCAGGAAAG
GCAGCCAGCGCTTCCCTAAAACGGACAGGATGTACCGTAAAAATGCGCGCGAACCGTGGCTGCTTTTTACCAGCCTGATGGGATATAAACCACGTGAGAT
AGTCAAAATTTACAGTCGCCGTATGCAGATAGAGCAGAACTTTAGAGATGAGAAAAGTGAACGTTATGGCCTGGGGCTGCGGGCAAGTAAAAGCCGGGGA
GAAAAGCGACTATCCGTGCTTTGTCTGGTCGCAACGCTCTACAGCATCATCATGTGGCTGACGGGATACTACCTTGAAAGTAAGGGGATAAATCGATGGT
TTCAGGCGAACAGTGAGAAATCACGAAGGGTATTGTCGTATCTGACGTTGAGTGAAAATGTCATCCGGCAGTCGCCGGGACTCCTGTCGGGAATGAACCC
CGACAGGGTTTATGCAGACATAGTGAGAGCCTATCGAAACATCATCATGGTGTATTGATGATGTTTCTGGGGATCCCTCAG
TGCCATAAATTTTTCAGTCAGTCCCTCAACTCACTTCATCAGTACCGTAAAAACGCCCTGCTCGATATGACTGTTGCCCTGACGCGCGGCGCATCACTCT
CACTGACCAGCATCGGCAGATATCTGCCAGGGCCGGCACGAGTTAAGCATAAGATTAAGCGTGTTGACCGGCATCTCAACAGCGATCTGATGTTCAGCGA
TATTCCCACCGTCTACCGGCAGCTTGTATCCCGCCTCACGCGCGGCCTTTCATTATGTGTTATTGCTGTGGACTGGAGCGGCTATCCATCATCGGAACTC
AGCGTTTTACGGGCAAGTTTATTATGCGATGGCAGAGCTATCCCGCTGATGAGTAAAGTCGTTTCCTCTCAATACCAGAATAACTCTACCGTCCAGAACG
ACTTTCTCGATCAGATGGCTGCCGCCATCGGCAAAGATAAACAGGTCATTGTCGTGACCGATGCAGGCTTTCGTAGCAGCTGGTTTCACCATATTCGCTT
TCTGGGCTGGCATTTTGTCGGACGTGTCAGAGGTAGCCTCTACTTTCAGATAGCCGGGGATGAAGGATGGCAGATGGCGCGGGATATCACGTCAGTTGCT
AAGCCATGCTATCTGGGATTTGGGCGACTGGCGCGCAGCGCCAGCCGTGACTGCCTCGGGCATTTCTATACGGTTCATAAGCGGGCCACGGGCAGGAAAG
GCAGCCAGCGCTTCCCTAAAACGGACAGGATGTACCGTAAAAATGCGCGCGAACCGTGGCTGCTTTTTACCAGCCTGATGGGATATAAACCACGTGAGAT
AGTCAAAATTTACAGTCGCCGTATGCAGATAGAGCAGAACTTTAGAGATGAGAAAAGTGAACGTTATGGCCTGGGGCTGCGGGCAAGTAAAAGCCGGGGA
GAAAAGCGACTATCCGTGCTTTGTCTGGTCGCAACGCTCTACAGCATCATCATGTGGCTGACGGGATACTACCTTGAAAGTAAGGGGATAAATCGATGGT
TTCAGGCGAACAGTGAGAAATCACGAAGGGTATTGTCGTATCTGACGTTGAGTGAAAATGTCATCCGGCAGTCGCCGGGACTCCTGTCGGGAATGAACCC
CGACAGGGTTTATGCAGACATAGTGAGAGCCTATCGAAACATCATCATGGTGTATTGATGATGTTTCTGGGGATCCCTCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1176 bp | 391 aa | 83 | 1258 | + | No |
Chemistry : DDE
ORF sequence :
MPASQVCHKFFSQSLNSLHQYRKNALLDMTVALTRGASLSLTSIGRYLPGPARVKHKIKRVDRHLNSDLMFSDIPTVYRQLVSRLTRGLSLCVIAVDWSG
YPSSELSVLRASLLCDGRAIPLMSKVVSSQYQNNSTVQNDFLDQMAAAIGKDKQVIVVTDAGFRSSWFHHIRFLGWHFVGRVRGSLYFQIAGDEGWQMAR
DITSVAKPCYLGFGRLARSASRDCLGHFYTVHKRATGRKGSQRFPKTDRMYRKNAREPWLLFTSLMGYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRLSVLCLVATLYSIIMWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADIVRAYRNIIMVY
YPSSELSVLRASLLCDGRAIPLMSKVVSSQYQNNSTVQNDFLDQMAAAIGKDKQVIVVTDAGFRSSWFHHIRFLGWHFVGRVRGSLYFQIAGDEGWQMAR
DITSVAKPCYLGFGRLARSASRDCLGHFYTVHKRATGRKGSQRFPKTDRMYRKNAREPWLLFTSLMGYKPREIVKIYSRRMQIEQNFRDEKSERYGLGLR
ASKSRGEKRLSVLCLVATLYSIIMWLTGYYLESKGINRWFQANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADIVRAYRNIIMVY
Blast result :
Comments
ISPcc1 is 95% aa similar to ISCro2.
References
Yevgeny Nikolaichik (2017) Direct submission to ISfinder