ISBli21

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 ND Brevibacterium linens
Brevibacterium linens BL2
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 2584 bp

Ends


IR Length : 15/26

IRL : TGAATATTCGCTTCGGTGGGATCCACCAATCGCGTGTGCGGGAGCCACTT
IRR : TGAGTATTTGAAGTTGTGAAGGCCACTCGATATTGCCTCCCGGGACCATC

Insertion site


Left flankDirect repeatRight flankDR Length
AACGATCTTCGCCCAGACCACAGCCGAGGC7

DNA sequence

TGAATATTCGCTTCGGTGGGATCCACCAATCGCGTGTGCGGGAGCCACTTTGTTGATCCCTGGATAGTGCGCGCGGGGACCACCAGTGGTGTGCTTGGGG
GCCACCGCGCTTAGGCTCCTTCCACCGCGTGTATACGGCACGCGGTGGAAGGAGACCATTCATGGTACGCAAAATCAGAGCCAAGTTGGTGCTGCAGCTA
CGCGCAGACGGGCTGTCGGCACGAGCGATCGCGGCGTCACAGGGCATGTCGCGGAAGTCCGTGGCCGCGGTCATCGAGGCCGCCGATGCGGCCAGGCTAC
GTTGGGACGACGTCAAGGCCGGCACGGATGACGAGGTCTACGAGCTGGTCTTCCCAGGGCGCGGTCAGCATCACAGCGTGTTCGCTCAGCCGGATTGGGA
GCAGGTCCACAAAGAGCTCGCTCGTGTCGGGGTCACGTTGAAGCTATTGCACAGCGAGTACGCCGATGACTGCGCGGCTGCGAGAGCGCCGGCAATGGGC
TACGACCGTTTCTGCCGGACCTATCAGCGTCATGTCCTCGTCACCGGAGCCGCGTCCAGGGTCGGACACAAGGCGGGGCAGACGATCGAGGTTGACTGGT
CCGGGCCTACGATGCAGCTGCATGATCCGGCCACTGGCAGGACGAGGATGGTGTACTTGTTCGTCGGCTGCCTGCCCTTTAGCCGGTACGCGTTCGTCGA
GCCTGCCTTGGATATGAAGCAGGACACCTGGCTGCGGGCTCATGTGGCAATGTTCGAAGCCTTTGGCGGGTCGAGCCCACGGATCGTGCCAGATAACCTC
AAGACCGGGGTACTCAAGCATCCCCGGGAGGGCGAGATCGTCCTCAACGATGCGTATCGGGAGATGGCGGCCCATTATCGTGCGGCGGTGTTGCCGGGCA
GGACCAGGGCACCGAAAGACAAAGCCAGCGTGGAGAACACCGTGTCGCACGTCGCGACCTGGATCATCGCCGGACTACGACAGGCTCGGTTCCAGACCCT
GCCGGAACTTCGGGCAGCGATCATCGAGAGAGTGGCCGGCTACAACGCTGAACCGTTCCAGAAGCGGCCCGGCTCCCGAGCCAGTGTGTTCGCCGCGCAT
GAGCAGTCGTTGCTGACACCTCTGCCGCAGGTGCCCTACGAGATCAGCCATTGGGTCTATGGACGGCGGGTTGCCCGCAACGGGCATGTGAGCTGGCAAC
GCAATCACTACTCGGTCCCGTTCGCGCATATCGGCACGAAAGTCGATCTGCGCATCACTGACCGGGTACTCGAGGCCTACCGGGGCACCGAGCGGCTGAG
CAGCCACCTGCTGCTGGCTGAGGGCGCGGCCAATGAGTATCGGACGAACGATGCTGACCTGCCCACCGGTGAAAGATATCAGCCCTGGGATGGGCCAAGG
GTGAGGGAGTGGGCCGAGCGAATCGGGCCTTCGGCCCTCGTGGTCGTCAACAGGATCTTCGAGTCCGTACCGATCGACGTGCAGGGACTCGATGCTGCGC
TGGCGGTGCTGCGGCTGTCGCGACGTTTCTCGGCAGAGCGGGTGGAGGCCGCCTGCAGGATCGGCCTGGCTGGCCCGATCCGTTCCCCACGCTATGCCCA
CCTGCAGCCGATCCTTGCCACTGGACAGGACAGGGCCGAACTGTTGCGGCCACCAAGAGAACAACGCGTCGAGCATGGCGGCTATGTCCGCGGTGCGTCC
TACTACGCAGAAGGGGACGCGAAATGAGTCAGATCGATACCGAGACCAAGCGCAAGTTGCGTGAGATGGGCGCGGGCCCGTTGTTAGAAGCCTGGGAGGG
CGAAGACGAGGGCCTGGTGTTGGGAATGAGCTTCGAGGACAGGCTGCGGCTGGTCGTCGATGAAGCTCACTCGGCGTTCAATCATGACAAGGTCGAGGGC
CTGATCCGGCGGGCCGGACTGCGTTACCCCGGAGCAGATCTGCGCCGCGTGGATCGAGTGGAGGAACGTGGATTGGATCGCCATGTCCTTGCCCAGCTGG
GCACGTGTTCGTTTATCGAGCGTCAGCAGAACGTGGTATTCCAGGGCTTCACCGGTTCTGGGAAGTCCTACCTGGGGTGCGCGTTGGCGAAGCAGGCCTG
TCAGCATCGGATCCGAGCGCACTACATTCGCATGCCTGATCTTGAAGAGGCGTGGGCGATTGCGAAGGACAAGCCGCAGGGGACGACGAAGTTCCTCCGC
AAGTACGCTGCCTTCACGTTGCTGGTCATCGATGAATGGCTGCTCGATCATCCGGATGAGTCGATGCGCGGAATGCTGCTGGAATTGCTCGAGCGTCGTT
ATGACAGCACGTCGACGGTGTTCTGTACTCAGTATGCCAAGAAGGACTGGCACCAACGACTCGGATCCGGGGTTCACGCTGATGCGATCATGGATCGCAT
CGTGCACAACACCATCTGGGTTGATACCGGCACTCACAATATGCGAGAACAAGCGATGCTGAACCAGTAAGAAGATAGTCGGTGGGGGCCTGTGGCCCCC
ACCGACACCACTCCTGGCCCCCACGGTCAATATCGATGGTCCCGGGAGGCAATATCGAGTGGCCTTCACAACTTCAAATACTCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1566 bp521 aa1621727+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVRKIRAKLVLQLRADGLSARAIAASQGMSRKSVAAVIEAADAARLRWDDVKAGTDDEVYELVFPGRGQHHSVFAQPDWEQVHKELARVGVTLKLLHSEY
ADDCAAARAPAMGYDRFCRTYQRHVLVTGAASRVGHKAGQTIEVDWSGPTMQLHDPATGRTRMVYLFVGCLPFSRYAFVEPALDMKQDTWLRAHVAMFEA
FGGSSPRIVPDNLKTGVLKHPREGEIVLNDAYREMAAHYRAAVLPGRTRAPKDKASVENTVSHVATWIIAGLRQARFQTLPELRAAIIERVAGYNAEPFQ
KRPGSRASVFAAHEQSLLTPLPQVPYEISHWVYGRRVARNGHVSWQRNHYSVPFAHIGTKVDLRITDRVLEAYRGTERLSSHLLLAEGAANEYRTNDADL
PTGERYQPWDGPRVREWAERIGPSALVVVNRIFESVPIDVQGLDAALAVLRLSRRFSAERVEAACRIGLAGPIRSPRYAHLQPILATGQDRAELLRPPRE
QRVEHGGYVRGASYYAEGDAK

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
747 bp248 aa17242470+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSQIDTETKRKLREMGAGPLLEAWEGEDEGLVLGMSFEDRLRLVVDEAHSAFNHDKVEGLIRRAGLRYPGADLRRVDRVEERGLDRHVLAQLGTCSFIER
QQNVVFQGFTGSGKSYLGCALAKQACQHRIRAHYIRMPDLEEAWAIAKDKPQGTTKFLRKYAAFTLLVIDEWLLDHPDESMRGMLLELLERRYDSTSTVF
CTQYAKKDWHQRLGSGVHADAIMDRIVHNTIWVDTGTHNMREQAMLNQ

 

Blast result :
Comments
ISBli21 is 76% aa similar to ISAar36.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.