ISTki1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009170 ND Thermoanaerobacter kivui
Thermoanaerobacter sp. X514
Thermoanaerobacter pseudethanolicus ATCC 33223
Thermoanaerobacter tengcongensis MB4
Thermoanaerobacter wiegelii Rt8.B1
Thermoanaerobacter kivui
Thermoanaerobacter kivui strain DSM 2030
Thermoanaerobacter sp. X513
DNA section
IS Length : 1341 bp

Ends


IR Length : 23/35

IRL : GTTAGTTGTATAATTAAATGCAACAGATAAAAAAATAGAAACCATAGTGA
IRR : ATAAATTGCAATATTAAATGCAACACCTAATGAAAATCATGTAGATATAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAATCCAGAAAAAGTATTTTATC(G/-)TGGATTATTT14
AAAAAATTTC(-/a)GTTAAATTATTTCGCAAAAATAAA14

DNA sequence

GTTAGTTGTATAATTAAATGCAACAGATAAAAAAATAGAAACCATAGTGAAAATCGTGTATGATATAGGTGTCAACTAAACATCATACAAGGAGGATTTT
CACTATGGTTCATAATAATTGTACCACAAAAAAGCGTTCTTTTAAACATTTAAGTAGCTATGAACGAGGAGAAATCTATGCATTACTCAAGGAAGGAAGG
AGCATTCGGTATATTGCTAAAAAACTTAATCGATCTCCAAGTACTATAAGCCGTGAAATTAAACGTGGAACTACTACACAACTTAGAAGTGATTTGTCTT
CTTATACAAGCTATTTTCCTGAAACTGGTCAGGCTGTCTACGAAAAAAATCGTTCAAATTGTGGAGCTAAATTTAAAGCAGCTAAAGCAGAAGATTTTTT
GAAATATGCTGAAAATAAAATATTAAATGAAAAATGGTCACCAGACGCAGTTGTAGGTTATTGTAAGAAGGACCCAAGTTGGAATAATAAAACCATTGTT
TGTACTAAAACACTCTACAACTATATAGATAGAGGATTATTAAAAGTTAAAAACATTGATTTACCTTTAAAACTACGCTTAAAACCAAGGAAGAAACAAA
ACCGTAAAAATAAACGTATTATGGGTAAAAGTATTGATTTTAGGCCTAAAGAAGTTGAAAGCCGCGAAGTTTTTGGACATTGGGAAATAGATACGTTAAT
TGGCAAGAAGTCTAATGACAAGGTCCTTTTAACATTAATAGAGCGTAAGACTCGCCATGAAATAATATTACTATTGGATACAAAAGACAGTAAATCTGTT
AAAGATGCACTATCAAAATTAAAAGATATGTTTGGTGACAATTTAAGCAAGGTCTTTAAAACAATAACATCTGATAATGGTACAGAGTTTAGTGATTTAG
AAAGTGCTCTTTTAGAATATGGCGTAGAAGTATATTATACACATCCATATTCATCTTGGGAAAGAGGTACAAATGAACGACATAATGGTCTTATACGACG
TTTTATCCCTAAAGGAAAAAGTATTAGAGATTTATCTATAGATACGATAAAGAGAGTAGAAAATTGGCTTAATAACCTTCCACGAAAATTGTTAAATTAT
AAAACACCTAAAGAATGCTTTTATGAGGAACTGGCAAAAATTTGTTAAGCCCATCTCTTATAAAGTATAGAGCTCGTTCGTGATTTGTCAAGGGGCAGGC
TTCGCCTGACTTAAACCCTTGACAAATCACGACCTTCGCTCAATTTGTTAACTAAGATGGGCTTAAGGTTATATATGATTTGTTCCAAATCCTATATCTA
CATGATTTTCATTAGGTGTTGCATTTAATATTGCAATTTAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa1051148+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVHNNCTTKKRSFKHLSSYERGEIYALLKEGRSIRYIAKKLNRSPSTISREIKRGTTTQLRSDLSSYTSYFPETGQAVYEKNRSNCGAKFKAAKAEDFLK
YAENKILNEKWSPDAVVGYCKKDPSWNNKTIVCTKTLYNYIDRGLLKVKNIDLPLKLRLKPRKKQNRKNKRIMGKSIDFRPKEVESREVFGHWEIDTLIG
KKSNDKVLLTLIERKTRHEIILLLDTKDSKSVKDALSKLKDMFGDNLSKVFKTITSDNGTEFSDLESALLEYGVEVYYTHPYSSWERGTNERHNGLIRRF
IPKGKSIRDLSIDTIKRVENWLNNLPRKLLNYKTPKECFYEELAKIC

 

Blast result :
Comments
ISTki1 is 85% aa similar to ISCth3.
References
1] Chandler M. (2017) Direct submission to ISfinder