ISHahy8

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1246 bp

Ends


IR Length : 19/26

IRL : TTTGAATTGTATAATTAAATGCACGCGGTGATTAGATAAAAAAATAGACA
IRR : GGTGAATTGCAACATGCAATGCACGCTTTTTTAATCTTTCTTAAAATCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTAATAATATAATCTTAAT0
AAAAATTGATTTTTAAAAAT0
AGAGTATAACTAAAGAGTAT0
TTAAAATTTTTACTTTAAAA0
GTCAGAAAAATTGTCAGAAAAA2
CATTTTGGTTATATCATTTT0
CTGCCTATTTATTCTGCCTA0

DNA sequence

TTTGAATTGTATAATTAAATGCACGCGGTGATTAGATAAAAAAATAGACACATACCTGTACCTTTTGTATAATGTTAATAGCGACAAAAACATTAGGAGG
TACAGAATATGTGTCAAAGTAATTGTAACACAAAACGAAGCAAAGGAAAACACCTGAATTTTGATGATCGCAAATTAATTAAACATTTATATAATGTCCA
AGAAAAAAATTATACTGAAATAGGCGAAGAATTAAACTGCCATAGAACAACAATCAGTCGAGAAATAAAAAAAGGTGAGGTAGAACTTGATAATGGTGAT
GGAACAACCAGAAAAGAATATGTACCAGAGATAGCACAGAAAGTATATGAATTTAATAATTCGAATAAAGGCCCTGATTTAAAAATCGATAAAAATAAAG
AGTTAGCAGAATTTATAGAAGAAAAAATCAAGGAATTAAGATCTCCTGCAGCAGTGGCAAAAGACATTGAAGAATCAGATAAATTTGAAATTCAATTACA
CTGGAAAACAATCTATAATTACATAGATAAAGGTGTTTTGAATATAGACAGAAGCGATCTCCCACATGGTAATTATAAAACTGGGAAAGACAGACCAAAA
GAAAGTGAAAGCACTACGAGGCGTAAGGAAGGTCGTACAATTAGAGATAGGCCTGAAGGAGCTGATACCAGGGAGGAATTTGGGCATTGGGAGATGGACT
TAGTAGAAGGGTTAAAACAAAAAGATGAACCTGCCTTACTAGTGCTGACAGAAAGACAAACTAGGCAGGAAATCATAGAAAAAATACCAAACAAAAAAGC
AAAGTCAGTGGTAAAAGGACTTGATCGTATAGAAAGACGATTTGGGGTTGTTAATTTTAGGGAAACATTTAAATCGATTACTACAGACAACGGTTCAGAA
TTTGCAGATTATGAAGGTATAGAACAATCATATACAGGTAGCAGTATACCTAGAACTAGTTTGTATTATTGTGATGCATACTGTAGCTGGCAAAGGGGAT
CAAATGAAGTAGCTAATAAGTTTATCAGAAGATTTTTACCTAAAGGCACAAGTTTTAAAGGTATTAAGAGAAAACTGATAAAAAAGATTCAGGATTTTAT
AAATACTTATCCTAGAAAAATGTTTAACTATGAAAACTCAGATAAATTATTTAAAGAGAAATTAAGCTTTAGTGTCTAGAAGTAATGAAGGTACAGGTGA
TTTTAAGAAAGATTAAAAAAGCGTGCATTGCATGTTGCAATTCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa1091179+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MCQSNCNTKRSKGKHLNFDDRKLIKHLYNVQEKNYTEIGEELNCHRTTISREIKKGEVELDNGDGTTRKEYVPEIAQKVYEFNNSNKGPDLKIDKNKELA
EFIEEKIKELRSPAAVAKDIEESDKFEIQLHWKTIYNYIDKGVLNIDRSDLPHGNYKTGKDRPKESESTTRRKEGRTIRDRPEGADTREEFGHWEMDLVE
GLKQKDEPALLVLTERQTRQEIIEKIPNKKAKSVVKGLDRIERRFGVVNFRETFKSITTDNGSEFADYEGIEQSYTGSSIPRTSLYYCDAYCSWQRGSNE
VANKFIRRFLPKGTSFKGIKRKLIKKIQDFINTYPRKMFNYENSDKLFKEKLSFSV

 

Blast result :
Comments
ISHahy8 is 61% aa similar to ISCth2.
References
1] Bassett K. (2017) Direct Submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683