ISHahy8
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002304 | ND | Halanaerobium hydrogeniformans | Halanaerobium hydrogeniformans |
DNA section
IS Length : 1246 bp
Ends
IR Length : 19/26
IRL : TTTGAATTGTATAATTAAATGCACGCGGTGATTAGATAAAAAAATAGACA
IRR : GGTGAATTGCAACATGCAATGCACGCTTTTTTAATCTTTCTTAAAATCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTAATAATA | TAATCTTAAT | 0 | |
AAAAATTGAT | TTTTAAAAAT | 0 | |
AGAGTATAAC | TAAAGAGTAT | 0 | |
TTAAAATTTT | TACTTTAAAA | 0 | |
GTCAGAAAAA | TT | GTCAGAAAAA | 2 |
CATTTTGGTT | ATATCATTTT | 0 | |
CTGCCTATTT | ATTCTGCCTA | 0 |
DNA sequence
TTTGAATTGTATAATTAAATGCACGCGGTGATTAGATAAAAAAATAGACACATACCTGTACCTTTTGTATAATGTTAATAGCGACAAAAACATTAGGAGG
TACAGAATATGTGTCAAAGTAATTGTAACACAAAACGAAGCAAAGGAAAACACCTGAATTTTGATGATCGCAAATTAATTAAACATTTATATAATGTCCA
AGAAAAAAATTATACTGAAATAGGCGAAGAATTAAACTGCCATAGAACAACAATCAGTCGAGAAATAAAAAAAGGTGAGGTAGAACTTGATAATGGTGAT
GGAACAACCAGAAAAGAATATGTACCAGAGATAGCACAGAAAGTATATGAATTTAATAATTCGAATAAAGGCCCTGATTTAAAAATCGATAAAAATAAAG
AGTTAGCAGAATTTATAGAAGAAAAAATCAAGGAATTAAGATCTCCTGCAGCAGTGGCAAAAGACATTGAAGAATCAGATAAATTTGAAATTCAATTACA
CTGGAAAACAATCTATAATTACATAGATAAAGGTGTTTTGAATATAGACAGAAGCGATCTCCCACATGGTAATTATAAAACTGGGAAAGACAGACCAAAA
GAAAGTGAAAGCACTACGAGGCGTAAGGAAGGTCGTACAATTAGAGATAGGCCTGAAGGAGCTGATACCAGGGAGGAATTTGGGCATTGGGAGATGGACT
TAGTAGAAGGGTTAAAACAAAAAGATGAACCTGCCTTACTAGTGCTGACAGAAAGACAAACTAGGCAGGAAATCATAGAAAAAATACCAAACAAAAAAGC
AAAGTCAGTGGTAAAAGGACTTGATCGTATAGAAAGACGATTTGGGGTTGTTAATTTTAGGGAAACATTTAAATCGATTACTACAGACAACGGTTCAGAA
TTTGCAGATTATGAAGGTATAGAACAATCATATACAGGTAGCAGTATACCTAGAACTAGTTTGTATTATTGTGATGCATACTGTAGCTGGCAAAGGGGAT
CAAATGAAGTAGCTAATAAGTTTATCAGAAGATTTTTACCTAAAGGCACAAGTTTTAAAGGTATTAAGAGAAAACTGATAAAAAAGATTCAGGATTTTAT
AAATACTTATCCTAGAAAAATGTTTAACTATGAAAACTCAGATAAATTATTTAAAGAGAAATTAAGCTTTAGTGTCTAGAAGTAATGAAGGTACAGGTGA
TTTTAAGAAAGATTAAAAAAGCGTGCATTGCATGTTGCAATTCACC
TACAGAATATGTGTCAAAGTAATTGTAACACAAAACGAAGCAAAGGAAAACACCTGAATTTTGATGATCGCAAATTAATTAAACATTTATATAATGTCCA
AGAAAAAAATTATACTGAAATAGGCGAAGAATTAAACTGCCATAGAACAACAATCAGTCGAGAAATAAAAAAAGGTGAGGTAGAACTTGATAATGGTGAT
GGAACAACCAGAAAAGAATATGTACCAGAGATAGCACAGAAAGTATATGAATTTAATAATTCGAATAAAGGCCCTGATTTAAAAATCGATAAAAATAAAG
AGTTAGCAGAATTTATAGAAGAAAAAATCAAGGAATTAAGATCTCCTGCAGCAGTGGCAAAAGACATTGAAGAATCAGATAAATTTGAAATTCAATTACA
CTGGAAAACAATCTATAATTACATAGATAAAGGTGTTTTGAATATAGACAGAAGCGATCTCCCACATGGTAATTATAAAACTGGGAAAGACAGACCAAAA
GAAAGTGAAAGCACTACGAGGCGTAAGGAAGGTCGTACAATTAGAGATAGGCCTGAAGGAGCTGATACCAGGGAGGAATTTGGGCATTGGGAGATGGACT
TAGTAGAAGGGTTAAAACAAAAAGATGAACCTGCCTTACTAGTGCTGACAGAAAGACAAACTAGGCAGGAAATCATAGAAAAAATACCAAACAAAAAAGC
AAAGTCAGTGGTAAAAGGACTTGATCGTATAGAAAGACGATTTGGGGTTGTTAATTTTAGGGAAACATTTAAATCGATTACTACAGACAACGGTTCAGAA
TTTGCAGATTATGAAGGTATAGAACAATCATATACAGGTAGCAGTATACCTAGAACTAGTTTGTATTATTGTGATGCATACTGTAGCTGGCAAAGGGGAT
CAAATGAAGTAGCTAATAAGTTTATCAGAAGATTTTTACCTAAAGGCACAAGTTTTAAAGGTATTAAGAGAAAACTGATAAAAAAGATTCAGGATTTTAT
AAATACTTATCCTAGAAAAATGTTTAACTATGAAAACTCAGATAAATTATTTAAAGAGAAATTAAGCTTTAGTGTCTAGAAGTAATGAAGGTACAGGTGA
TTTTAAGAAAGATTAAAAAAGCGTGCATTGCATGTTGCAATTCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1071 bp | 356 aa | 109 | 1179 | + | No |
Chemistry : DDE
ORF sequence :
MCQSNCNTKRSKGKHLNFDDRKLIKHLYNVQEKNYTEIGEELNCHRTTISREIKKGEVELDNGDGTTRKEYVPEIAQKVYEFNNSNKGPDLKIDKNKELA
EFIEEKIKELRSPAAVAKDIEESDKFEIQLHWKTIYNYIDKGVLNIDRSDLPHGNYKTGKDRPKESESTTRRKEGRTIRDRPEGADTREEFGHWEMDLVE
GLKQKDEPALLVLTERQTRQEIIEKIPNKKAKSVVKGLDRIERRFGVVNFRETFKSITTDNGSEFADYEGIEQSYTGSSIPRTSLYYCDAYCSWQRGSNE
VANKFIRRFLPKGTSFKGIKRKLIKKIQDFINTYPRKMFNYENSDKLFKEKLSFSV
EFIEEKIKELRSPAAVAKDIEESDKFEIQLHWKTIYNYIDKGVLNIDRSDLPHGNYKTGKDRPKESESTTRRKEGRTIRDRPEGADTREEFGHWEMDLVE
GLKQKDEPALLVLTERQTRQEIIEKIPNKKAKSVVKGLDRIERRFGVVNFRETFKSITTDNGSEFADYEGIEQSYTGSSIPRTSLYYCDAYCSWQRGSNE
VANKFIRRFLPKGTSFKGIKRKLIKKIQDFINTYPRKMFNYENSDKLFKEKLSFSV
Blast result :
Comments
ISHahy8 is 61% aa similar to ISCth2.
References
1] Bassett K. (2017) Direct Submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683