ISBli16

  • Family ISNCY
  • Group ISLbi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 ND Brevibacterium linens
Brevibacterium linens SMQ-1335
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 1428 bp

Ends


IR Length : 17/27

IRL : TCGACCAGACTCACGTAAACAGCCCGGATGCCACCCTCGGTGCCTCATAT
IRR : CCGTAATGCCTCATGTCAATATGCCCGCGAAATGTTCTCGATGCCTCACA

Insertion site


Left flankDirect repeatRight flankDR Length
GTAGACATTTCGCAAGGCAGGGACACCGCCCGAG6

DNA sequence

TCGACCAGACTCACGTAAACAGCCCGGATGCCACCCTCGGTGCCTCATATACTTTTGCCCGCGAAATGGTGGACCCTCGGAAGCTATGGGGAGTGAACTG
TCGATGGCGACTCGAGCAGAGATCACCACGAAATACGCCAGGGAATACAAGAAGGCTTCGAAGAAGAACAAGGGCACTGTTCTTAACGAGGTCATGGCCG
TCACGGGCTGGACCCGCGACAACGCACGACGGCGATTAACCCAAGCCGCGAAACACCCACCCGGCCGCGGCAAGCAAGTCGCTTCGCATCCGCGTCAACC
TCGGGCCAGGAAATACTCCTACGACGCGGTCAAAATCCTCCAGCGCGTGTGGGCGATCTCGGGTGGTCAATGCGGCAAATACCTCCACACCACGATGCGG
ATCCTCCTTGACCTCCTCGAAGCCCACAACGAGCTCACCCTCGGCCAGGACCGCTACACCAAAAAGGTGCGTAAGGAACTGCTTGCGATGAGTCCGGCCA
CGATCGACCGGTACCTCAAACCCGTGCGAGCCAGGGACGCGATCAACGGGATCTCGACGACGAAGCCCGGGTCCTTGCTGCGTTCAGCGATCACGATCCG
CCGGGCCGGTGACGATGTCGAAGGCGAGCCCGGCTTCTTCGAAGGAGACACCGTCGCCCACTGCGGACCCGTTGAGTCCGGGGAATTCGCACGCACGCTC
AACCTCACCGACTTCCACACGGGGTGGACGTTCACGCGCACGGTGCGTAACAACGCTCATACGAACATCCTGGCGGGGTTGAAGACCGCAGCTCGTGAGA
TTCCATTTCAGATCACTGGCTTGGACTTCGATAACGGGTCGGAGTTCCTCAACCAATACGTCATCGAATGGGCCGGGTCGAAAGGCATCTACTTCACCCG
GTCGCGGCCGTATAAAAAGAACGATCAGGCCACGATCGAGTCAAAGAACAACCACGTCGTACGCCGGTATGGGTTCTACTACCGTTACGACACTGACCTG
GAACGACGAGCACTCAACCGGCTATGGCGTTTAGTCAATGATCGGGTCAATTATCTGATGCCCACGATCAAGCCGACCGGGTATGGAGCGACGAAGAATG
GGCGACGTAAACGTGTCTATGATCGGCCCCGGACTCCCTTCGATAGGCTCCTCGATTCTGGTGTCTTAGCGCCGAAACAGGTGAAGGACATGACGGCGTA
TCGCAACAGTCTCAACCCGGCGAGGATCGCTGCTGAGATCGCCCGGGTCCAGGACCGATTGCTGGTTCTATCGGGTAAGAAGACCGAGCAAATGTATCTG
GCTTCGTTCCCGTCAGCCCTGCCGGATGTGCGTAAGGGCGTGCGAGTCAAGACTGGGTAGGTTTCGCGGGCAAATCTATGTGAGGCATCGAGAACATTTC
GCGGGCATATTGACATGAGGCATTACGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1041360+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MATRAEITTKYAREYKKASKKNKGTVLNEVMAVTGWTRDNARRRLTQAAKHPPGRGKQVASHPRQPRARKYSYDAVKILQRVWAISGGQCGKYLHTTMRI
LLDLLEAHNELTLGQDRYTKKVRKELLAMSPATIDRYLKPVRARDAINGISTTKPGSLLRSAITIRRAGDDVEGEPGFFEGDTVAHCGPVESGEFARTLN
LTDFHTGWTFTRTVRNNAHTNILAGLKTAAREIPFQITGLDFDNGSEFLNQYVIEWAGSKGIYFTRSRPYKKNDQATIESKNNHVVRRYGFYYRYDTDLE
RRALNRLWRLVNDRVNYLMPTIKPTGYGATKNGRRKRVYDRPRTPFDRLLDSGVLAPKQVKDMTAYRNSLNPARIAAEIARVQDRLLVLSGKKTEQMYLA
SFPSALPDVRKGVRVKTG

 

Blast result :
Comments
ISBli16 is 53% aa similar to ISKol11.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.