ISBli13
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017150 | N | Brevibacterium linens | Brevibacterium linens SMQ-1335 Brevibacterium linens Brevibacterium aurantiacum |
DNA section
IS Length : 1133 bp
Ends
IR Length : 19/22
IRL : GTGTCCTGCGCCGTAAATTCGTGTAAGAAGTTGTAGAATGGAGTATGCCT
IRR : GTGTCCTGCGCCGGTAGTTCGTTGCATTAGTCGTGAGAGAGATTCCAGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGTTGTGGC | TA | GGTAGCCGGTAT | 2 |
DNA sequence
GTGTCCTGCGCCGTAAATTCGTGTAAGAAGTTGTAGAATGGAGTATGCCTCGCACCGGTCGTCCGAAAGCCGAACTGATCCTCACCGATGAAGAACACCA
GACGTTGACTCGCTGGTCCCGTCGGCGCAAGTCCTCACAAGCCCTTGCTCTGCGCTCACGAATCATCCTCGGCTGCGGGCAGGAACGATCAAACAAGGAA
GTCGCCACCAGCCTCGGCTGCACGCCCGCGACTGTGGCCAAATGGCGGAACCGATTCATTGCCGACCGACTCGATGGTCTCGTCGACGAACCACGCCCAG
GTAGACCCGCCACGATCACGGCCGAGCAGGTCGAGGACGTCATCACCTCAACCCTGGAACAAACACCGAAAAACGCCACCCACTGGTCACGGGCGCAGAT
GGCCGAACGCAGCGGACTATCGAAATCGACGATCGGACGGATCTGGAAGGCCTTCGAGCTCAAACCCCACCGCGCCGATGGGTTCAAACTCTCCAACGAC
CCTCTCTTCGTGGAAAAGGTCTACGACATCGTCGGCCTTTACCTCAATCCACCCGAGTCCGCTGTCGTGCTCAGCGTCGATGAGAAGTCCCAGGTCCAAG
CGCTGTCTCGGTCCCAGCCGGCGTTTCCGATGATGCCGGGCATGCCGGAGAAACGTACCCACGATTACGCCCGCCACGGCACGACGAGTCTCTTCGCAGC
GCTGAATGTCGCCGATGGAACCGTGATCGCCTCGACACACCGCAAGCACCGCGCGATCGAGTTCAAAAAGTTCTTAACCAAGATCGACAAACACGTTCCA
GACCACCTCGACATCCACGTCGTGTGTGACAACTACGGCACGCACAAACACCCGTTGGTGCGGAACTGGCTGGGCAAGCATGAGCGGTTCCATATTCATT
TCACGCCCACGTATTCGTCGTGGATCAACCAGGTCGAGAGGCTCTTCGCTGAAGTCACCCGCGAACTCCTCCAGCGCAGTGACCACCGAAGCGTGCAAGC
CCTGGAGAAAGACCGTCGCGAGTGGGTTAAGGCGTGGAACGAGGACCCGCAGCCATTCGTGTGGACGAAAACCGCGGAAGAGATACTGGAATCTCTCTCA
CGACTAATGCAACGAACTACCGGCGCAGGACAC
GACGTTGACTCGCTGGTCCCGTCGGCGCAAGTCCTCACAAGCCCTTGCTCTGCGCTCACGAATCATCCTCGGCTGCGGGCAGGAACGATCAAACAAGGAA
GTCGCCACCAGCCTCGGCTGCACGCCCGCGACTGTGGCCAAATGGCGGAACCGATTCATTGCCGACCGACTCGATGGTCTCGTCGACGAACCACGCCCAG
GTAGACCCGCCACGATCACGGCCGAGCAGGTCGAGGACGTCATCACCTCAACCCTGGAACAAACACCGAAAAACGCCACCCACTGGTCACGGGCGCAGAT
GGCCGAACGCAGCGGACTATCGAAATCGACGATCGGACGGATCTGGAAGGCCTTCGAGCTCAAACCCCACCGCGCCGATGGGTTCAAACTCTCCAACGAC
CCTCTCTTCGTGGAAAAGGTCTACGACATCGTCGGCCTTTACCTCAATCCACCCGAGTCCGCTGTCGTGCTCAGCGTCGATGAGAAGTCCCAGGTCCAAG
CGCTGTCTCGGTCCCAGCCGGCGTTTCCGATGATGCCGGGCATGCCGGAGAAACGTACCCACGATTACGCCCGCCACGGCACGACGAGTCTCTTCGCAGC
GCTGAATGTCGCCGATGGAACCGTGATCGCCTCGACACACCGCAAGCACCGCGCGATCGAGTTCAAAAAGTTCTTAACCAAGATCGACAAACACGTTCCA
GACCACCTCGACATCCACGTCGTGTGTGACAACTACGGCACGCACAAACACCCGTTGGTGCGGAACTGGCTGGGCAAGCATGAGCGGTTCCATATTCATT
TCACGCCCACGTATTCGTCGTGGATCAACCAGGTCGAGAGGCTCTTCGCTGAAGTCACCCGCGAACTCCTCCAGCGCAGTGACCACCGAAGCGTGCAAGC
CCTGGAGAAAGACCGTCGCGAGTGGGTTAAGGCGTGGAACGAGGACCCGCAGCCATTCGTGTGGACGAAAACCGCGGAAGAGATACTGGAATCTCTCTCA
CGACTAATGCAACGAACTACCGGCGCAGGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 363 aa | 45 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MPRTGRPKAELILTDEEHQTLTRWSRRRKSSQALALRSRIILGCGQERSNKEVATSLGCTPATVAKWRNRFIADRLDGLVDEPRPGRPATITAEQVEDVI
TSTLEQTPKNATHWSRAQMAERSGLSKSTIGRIWKAFELKPHRADGFKLSNDPLFVEKVYDIVGLYLNPPESAVVLSVDEKSQVQALSRSQPAFPMMPGM
PEKRTHDYARHGTTSLFAALNVADGTVIASTHRKHRAIEFKKFLTKIDKHVPDHLDIHVVCDNYGTHKHPLVRNWLGKHERFHIHFTPTYSSWINQVERL
FAEVTRELLQRSDHRSVQALEKDRREWVKAWNEDPQPFVWTKTAEEILESLSRLMQRTTGAGH
TSTLEQTPKNATHWSRAQMAERSGLSKSTIGRIWKAFELKPHRADGFKLSNDPLFVEKVYDIVGLYLNPPESAVVLSVDEKSQVQALSRSQPAFPMMPGM
PEKRTHDYARHGTTSLFAALNVADGTVIASTHRKHRAIEFKKFLTKIDKHVPDHLDIHVVCDNYGTHKHPLVRNWLGKHERFHIHFTPTYSSWINQVERL
FAEVTRELLQRSDHRSVQALEKDRREWVKAWNEDPQPFVWTKTAEEILESLSRLMQRTTGAGH
Blast result :
Comments
ISBli13 is 72% aa similar to ISMsm2.
The STOP codon is done by the insertion site .
The STOP codon is done by the insertion site .
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.