ISBli13

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 N Brevibacterium linens
Brevibacterium linens SMQ-1335
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 1133 bp

Ends


IR Length : 19/22

IRL : GTGTCCTGCGCCGTAAATTCGTGTAAGAAGTTGTAGAATGGAGTATGCCT
IRR : GTGTCCTGCGCCGGTAGTTCGTTGCATTAGTCGTGAGAGAGATTCCAGTA

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGTTGTGGCTAGGTAGCCGGTAT2

DNA sequence

GTGTCCTGCGCCGTAAATTCGTGTAAGAAGTTGTAGAATGGAGTATGCCTCGCACCGGTCGTCCGAAAGCCGAACTGATCCTCACCGATGAAGAACACCA
GACGTTGACTCGCTGGTCCCGTCGGCGCAAGTCCTCACAAGCCCTTGCTCTGCGCTCACGAATCATCCTCGGCTGCGGGCAGGAACGATCAAACAAGGAA
GTCGCCACCAGCCTCGGCTGCACGCCCGCGACTGTGGCCAAATGGCGGAACCGATTCATTGCCGACCGACTCGATGGTCTCGTCGACGAACCACGCCCAG
GTAGACCCGCCACGATCACGGCCGAGCAGGTCGAGGACGTCATCACCTCAACCCTGGAACAAACACCGAAAAACGCCACCCACTGGTCACGGGCGCAGAT
GGCCGAACGCAGCGGACTATCGAAATCGACGATCGGACGGATCTGGAAGGCCTTCGAGCTCAAACCCCACCGCGCCGATGGGTTCAAACTCTCCAACGAC
CCTCTCTTCGTGGAAAAGGTCTACGACATCGTCGGCCTTTACCTCAATCCACCCGAGTCCGCTGTCGTGCTCAGCGTCGATGAGAAGTCCCAGGTCCAAG
CGCTGTCTCGGTCCCAGCCGGCGTTTCCGATGATGCCGGGCATGCCGGAGAAACGTACCCACGATTACGCCCGCCACGGCACGACGAGTCTCTTCGCAGC
GCTGAATGTCGCCGATGGAACCGTGATCGCCTCGACACACCGCAAGCACCGCGCGATCGAGTTCAAAAAGTTCTTAACCAAGATCGACAAACACGTTCCA
GACCACCTCGACATCCACGTCGTGTGTGACAACTACGGCACGCACAAACACCCGTTGGTGCGGAACTGGCTGGGCAAGCATGAGCGGTTCCATATTCATT
TCACGCCCACGTATTCGTCGTGGATCAACCAGGTCGAGAGGCTCTTCGCTGAAGTCACCCGCGAACTCCTCCAGCGCAGTGACCACCGAAGCGTGCAAGC
CCTGGAGAAAGACCGTCGCGAGTGGGTTAAGGCGTGGAACGAGGACCCGCAGCCATTCGTGTGGACGAAAACCGCGGAAGAGATACTGGAATCTCTCTCA
CGACTAATGCAACGAACTACCGGCGCAGGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp363 aa451133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRTGRPKAELILTDEEHQTLTRWSRRRKSSQALALRSRIILGCGQERSNKEVATSLGCTPATVAKWRNRFIADRLDGLVDEPRPGRPATITAEQVEDVI
TSTLEQTPKNATHWSRAQMAERSGLSKSTIGRIWKAFELKPHRADGFKLSNDPLFVEKVYDIVGLYLNPPESAVVLSVDEKSQVQALSRSQPAFPMMPGM
PEKRTHDYARHGTTSLFAALNVADGTVIASTHRKHRAIEFKKFLTKIDKHVPDHLDIHVVCDNYGTHKHPLVRNWLGKHERFHIHFTPTYSSWINQVERL
FAEVTRELLQRSDHRSVQALEKDRREWVKAWNEDPQPFVWTKTAEEILESLSRLMQRTTGAGH

 

Blast result :
Comments
ISBli13 is 72% aa similar to ISMsm2.
The STOP codon is done by the insertion site .
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.