ISBli12

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 N Brevibacterium linens
Brevibacterium linens SMQ-1335
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 1435 bp

Ends


IR Length : 26/27

IRL : GGCTCTTCGTAATTGAGAGTGTAGAACGGTGATTTTCAACTAGGGTGAGT
IRR : GGCTCATCGTAATTGAGAGTGTAGAACCGGCCTGAAACCACCGGATTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CACTATTGCCGGATATCGCC0

DNA sequence

GGCTCTTCGTAATTGAGAGTGTAGAACGGTGATTTTCAACTAGGGTGAGTCGCTGCCCGGAAAGACGTCGAGGTCTTCCGATGATGGAAGTTCTCACACT
GCCCATCCGAAAGACCTCGACGTGGCCAAGCCTATATTCTCGACCCCTGACCTCACGACATTCGCCCGACTCGACACCCTGGACCTCACCTGCATCGGCC
AATACATCACCGCCAACAACGCCATCCTGAAATGCCGGCCGAATACCACCGATAACTGGTGCCGCCGGTGTGGCGGCCACGGCGACATCCGCGACACCGT
TCTGCGCCGGCTGGCACATGAACCCTTCGGACACAGGCCAACGACACTTCATATCCGCCTGCATCGCTACAAGTGCATCGAATGCGGCCACGTGTGGCGC
CAGGACACCACGGCTGCGGCACCAGCCCGGGCAAAGATCTCCCGGTCCGGACTCGATTGGGCACTGCGTGCGCTCGTCGTTGATCACGACACCGTGTCCG
TGATTGCTGCGAAACTCGCTGTGTCCTGGCATACCGCGAACTCCGCGGTTCTGGCCGAAGGACACCGGCTGCTGATCAATGATCCGAATCGTTTCGACGG
TGTGTCTGTCATTGGTGTCGATGAGCACGTGTGGCGCCACACTCGCCGGGGAGACAAATACGTCACAGTCATCATCGACCTCACTCCAATCGGCCAGGGC
ACGGGCCCCGCACGCCTACTCGATATGGTGCCCGGACGGTCAAAGCAGGTCTTCAAACAATGGTTGGCCGCTCGACCCAAGGATTGGCGTGATGGTATCG
AAGTCGTCGCGATGGACGGATTCTCAGGATTCAAAACAGCTGCAGCGGAGGAACTTCCCGATGCTGTAGAAGTCATGGATCCGTTCCACGTCGTCAAACT
TGCTGGTGATGCCCTCGATGACGTTCGTCGCCGCGTCCAGCAGGAAACAACTGGGCATCGGGGACGGGCGAAGGATCCGTTGTATCGGGCAAGGAGGACG
CTGCACACGGGTACGGACCTGCTCACAAGGCGACAACAAGCACGGATCGCCCGTCTCTTCGCTACTGCGAACCTCACCGAAGTCGAAGTCACCTGGGCTG
TCTATCAAGACATCGTGGCTGCCTACCGGGCCGAGGACAGAAGCGAAGGCAAGAGGCTCTTGCAGGCTGTCATCGATGTTCTGTCGACGGGTCTGCCTGC
TGGGTTGGTTGAGCTGAGGCGGTTAGGGAGAACCCTGAAGCGACGCGCAACTGACGTGTTGGCCTTCTTCACCAGGCCCGGGACGTCGAACGGGCCAACC
GAATCGATCAATGGCAGGCTCGAACATCTTCGGGGATCGGCATTGGGATTCCGCAACCTCACTCATTACATCGCCAGGTGCTTACTCGAATCCGGTGGTT
TCAGGCCGGTTCTACACTCTCAATTACGATGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1311 bp436 aa1221432+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAKPIFSTPDLTTFARLDTLDLTCIGQYITANNAILKCRPNTTDNWCRRCGGHGDIRDTVLRRLAHEPFGHRPTTLHIRLHRYKCIECGHVWRQDTTAAA
PARAKISRSGLDWALRALVVDHDTVSVIAAKLAVSWHTANSAVLAEGHRLLINDPNRFDGVSVIGVDEHVWRHTRRGDKYVTVIIDLTPIGQGTGPARLL
DMVPGRSKQVFKQWLAARPKDWRDGIEVVAMDGFSGFKTAAAEELPDAVEVMDPFHVVKLAGDALDDVRRRVQQETTGHRGRAKDPLYRARRTLHTGTDL
LTRRQQARIARLFATANLTEVEVTWAVYQDIVAAYRAEDRSEGKRLLQAVIDVLSTGLPAGLVELRRLGRTLKRRATDVLAFFTRPGTSNGPTESINGRL
EHLRGSALGFRNLTHYIARCLLESGGFRPVLHSQLR*

 

Blast result :
Comments
ISBli12 is 97% aa similar to ISBli1.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.