ISBst12

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s) ISBs12980
Accession numberTranspositionOriginHost
AF162268 ND Bacillus stearothermophilus
Geobacillus stearothermophilus plasmid pGS18
Geobacillus kaustophilus HTA426
Geobacillus sp. WCH70
Bacillus stearothermophilus
Geobacillus sp. WCH70 plasmid pWCH7001
DNA section
IS Length : 1612 bp

Ends


IR Length : 15/16

IRL : GTAACTATTCAGCCCATCATAAAGTGAGCTGAATATTTTCTTCTTTCCTT
IRR : GTAACTATTCACCCCAGTGCTAGTGTATAAAAAAGCCCAGCACAAATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCATTAAAGNNNNNNNNNN8
TTTTTTTGTACAACTAACATACTAATTG8
CTATATATGCATTCATTTGTAAAGCAGC8
AAGCACATTTGTTTTAGCCGCAGGGGAA8
AATTATGTTACAAAATGAAGACATAATT8
ATTAGAATTTAATCGTAGAAAAAGATCT8
AAAGAACCTTATTTTATCTTAATTAGGC8
TCGATGACGATTTTAGGCGATATTGCAC8
CCAAGCGTTAAATCCCCTTTATTTTCTT8
AAGAAAGAAAAAATTTTTTTATATCGGC8
CAACTTTTTAAACCATTTATACATGCTA8
GTATATACAAAAAAGAACCTTAGTCTGA8
TTTTAAACGCCATCAATTTA0
GCTGAAAATGAAAAATTTTA0
TCCTTTATGCCTAATTTTTA0

DNA sequence

GTAACTATTCAGCCCATCATAAAGTGAGCTGAATATTTTCTTCTTTCCTTGTCTATGATGTGAATATTGATAGACAAGGAGGTGAATCGCATGTTGACGG
TACAACAAGCTGTATTTACAGTTGAGAGCTTAATCGGCAAAGTTCAACAACAAAAACAGCTCATTCATCAACTCATTCAAGAAAATGAACATTTGCGTCA
CGAAAACAAACAGCTACGCAAAGAAAATGAACAACTGAAGTACCGTGTTCAAGAGCTGGAAGCACGCACGAAAAAAAACAGCTCCAATAGCCATTTGCCC
CCATCTTCTGACCGTTTTGAGAAAAAGCGTTCCTCCCGCGAGCCGTCTGGCAAAAAGCCTGGTGGGCAAGAGGGACATGAGGGGAAGACGCTCCGTCAAG
TGGAACATCCACATCATCGTGTCGTCCACCGTGTGCATACGTGTCAAGGATGTGGAGCTTCTTTGCGTGAAGTCAAACCGTTCAAAGTCGATATCCGTCA
AGTGTTTGATGTCCCTCCTGTGGCGATCGAGGTGACACAACATGAACGTGAAGTGAAATCGTGTCCACATTGTCGATGCGTGCAACAAGCCGAATTCCCA
TCCCATGTCACGAATCATGTGCAATACGGTCCACGGCTCACGGCGCTCGTTGTTTATTTACATCATATCCAATTGATCCCGTACAAGCGTTTAAGTGATA
CAATCGAAGCGTTATATCAACACTCGATTAGTACAGGAACCCTTGCCAATATGGTGAAACGAGGACGCGAAGCGCTGGAATCAAATATGGACATCATCGA
AGACGCCTTACTTGAATCCAACATCCTGCATGTCGATGAAACGAGTTTGCGCATCAATGGGAAACTCGCATGGGTGCATGTCGCGTGTACATCGAGATAT
ACATACTTGGCTCCTCACGCTTCTCGTGGAAAAAAAGCGACCGATGAGATCGGGATTCTTCCCCGATATGAAGGGACGATGATGCACGATGCGTTCGGTA
CGTATCCGAAATACACACATGCCACCCATGCCCTTTGTCATGCCCACCATTTGCGTGAGTTAAAAGGATTCATCGAACAGGGGCATACGTGGGCGATGCG
CATGACCACGTTTCTGTTAGCCGCCAAGCAAGCCGTCGAAGCCCATCACGGTGCACTTTCCGAAGAAGAAGCGAGACGGTGGGAACGAGTGTATGATCGC
ATCCTAGAAAGAGCACAACACCGATTAGAAACGATGACGCCTCTTCCGAAAAAAGCACTCGCTTTTGTTCGACGCCTTCAAAAACGAAAGGAAGAAGCGC
TGCGTTTCTTACGTGAAGTACATGTTCCCTTTGACAACAACCAAGCCGAACGCGATCTTCGCATGGTTAAAGTCAAAGAGAACATTTCGGGTACATTTCG
CGAAGAAACATTCGCGCAGTCGTTTTGCATCGCAAGAAGCATCGTTTCCACACTGACGAAACACGAAAAAAACGTGTGGGATTCGTTATGTCTTCTGTTG
GCAGGCGAAACGATCGATCGAGTTCTTTCCGCTACCTAGGGCATTTTCTATGACCGAAATGCCCTATTTGTGCTGGGCTTTTTTATACACTAGCACTGGG
GTGAATAGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1449 bp482 aa911539+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTVQQAVFTVESLIGKVQQQKQLIHQLIQENEHLRHENKQLRKENEQLKYRVQELEARTKKNSSNSHLPPSSDRFEKKRSSREPSGKKPGGQEGHEGKT
LRQVEHPHHRVVHRVHTCQGCGASLREVKPFKVDIRQVFDVPPVAIEVTQHEREVKSCPHCRCVQQAEFPSHVTNHVQYGPRLTALVVYLHHIQLIPYKR
LSDTIEALYQHSISTGTLANMVKRGREALESNMDIIEDALLESNILHVDETSLRINGKLAWVHVACTSRYTYLAPHASRGKKATDEIGILPRYEGTMMHD
AFGTYPKYTHATHALCHAHHLRELKGFIEQGHTWAMRMTTFLLAAKQAVEAHHGALSEEEARRWERVYDRILERAQHRLETMTPLPKKALAFVRRLQKRK
EEALRFLREVHVPFDNNQAERDLRMVKVKENISGTFREETFAQSFCIARSIVSTLTKHEKNVWDSLCLLLAGETIDRVLSAT

 

Blast result :
Comments
ISBst12 is 97% aa similar to ISGst1.
References
1] Egelseer, EM, Idris, R., Jarosch, M., Sleytr, U.B. and Sara, M. (1999) Direct submission GenBank.
2] Egelseer,E.M., Idris,R., Jarosch,M., Danhorn,T., Sleytr,U.B. and Sara,M. (2000) Microbiology 146 (Pt 9), 2175-2183.