ISBli7

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 ND Brevibacterium linens
Brevibacterium linens SMQ-1335
Brevibacterium linens
Brevibacterium aurantiacum
DNA section
IS Length : 2569 bp

Ends


IR Length : 29/48

IRL : TGAATATCCGTCTTGTTGGGGGCCGTCAATCGTGAGCTCGGGGGCCAGTT
IRR : TGAGTATTTGAAGCTTTGGGGACCACCCGATCGTGCGGTTGGGGACCACC

Insertion site


Left flankDirect repeatRight flankDR Length
GTCGAGAGTGAGCGAACACGGGTCAGCCATGGCC7

DNA sequence

TGAATATCCGTCTTGTTGGGGGCCGTCAATCGTGAGCTCGGGGGCCAGTTGCTTGGTCGCGTGATCGTGGGCGTCGGGACCATCTATGGCGTGTGCGGGG
GCCACGAACTATAAGCTCCTTTCACCGCGTGTATTGGGCACGCGGCGAAAGGAGATTATCAATGGTACGCAAGATCAGGGCCAAGCTGGTGTTACAGCTT
CGAGCCGAGGGGCTCTCGGGCAGAGCGATCGCTGGCTCCCAGGCAATGTCACGCAAATCGGTCACGCAGGTCCTCGAGGCCGCCGACGCTGCGGGACTCG
GGTGGGATGATGTCAAGGACCGTGCTGACAGTGAAGTGTATGGCCTCCTGTTTCCGGGCCGCGGGGACCATCACAGCGTGTTCGCCCAACCTGACTGGAA
GGCAATCCATAAGGAAATGGCCCGGGTCGGGGTGACGCTGAAGCTCCTCCATGGCGAGTACGCCGATGAGTGCGCTGCGGCTGGTGATCCGGCGATGAGT
TATGACCGGTTCTGCCGCACCTATCAGCGCCACGTCCTCGTCACCGGTGCAGCTTCTCGTGTGGGACACAAAGCCGCCCAGACCATCGAGGTCGACTGGT
CCGGTCCGACAATGCAACTGCACACGGGGGCAGACAAGCCGAAGACGGTCTATCTGTTCGTCGCGTGTCTGCCCTTCAGCAGGTACGCATTCGTGCACCC
GAGCCTGGACATGAGTCAGGACTCGTGGCTCCGGGCGCATGTGGCGATGTTCACCGCTTTCGGCGGTTCAACACCGCGGATCGTGCCCGACAATCTCAAG
ACCGGAGTCATCACTCATCCTCGCGACGGTGAAATCGTGCTCAACGACGCCTATCGGGAAATGGCTGCCCACTATTCGGCTGCTGTTCTACCGGGCAGAA
TCAGGGCACCAAAAGACAAGGCGAGTGTTGAGAATACTGTTGGACATGTCGCCACATGGGTGATCGCAGGGCTACGTGACCGGCGGTTCACATCGCTGCC
GACGTTGACGGCCGCGATCGAGGAGAGAGTCTGCGCTTATAATGCTGAACCTTTCCAGAAGCGGCCCGGATCCAGGCTCAGTGTCTTCACCACGGAGGAG
GAACCGCTGTTGACACCGCTGCCGCAGGTGGCCTACGAGATCAGTCAGTGGATCTATGGGCGGCGTGTGGCCAGGAACGGGCATGTGAGCTGGGCGCGCA
ACTATTACTCGGTGCCGTTTGAGCACATCGGATCCAAAGTCGATCTGCGCATCACCGACCGCAGCCTCGAAGTCTACCGCGGGGACCAGCGAGTCACGAC
TCACCTGCTGCTGCCAGAGACTGCGGTCAATGAGTATCGCACGAATGATGCTGACCTTCCTGCTGGGGACAGATACCAGCAGTGGGACGCGGCCCGGATA
CGCCAATGGGCCGAGAGGATCGGGGCGTCGACGCTGGTCGTCATCAATCGCATCTTCGAGTCCGTAGCCATCGACGAGCAAGGGGTCAACCCGGCGTTGG
CGGTGTTGAGACTCTCTCGCCGCTACTCTGCCGACCGGGTCGAAGCCGCTTGCCGGATTACGCTGGCGGGGCCGGTGCGGTCGCCACGGTATGCGCATGT
GCAACCGCTCCTTGCCACCGGTCAGGACCAGACCAGACCCGCCCGGACCGAACCTGTCGAGCACGGCGGCTACGTCCGCGGTGCCTCCTACTATGCAGGA
GGGACTCGGTGACTTCGATCGATACAGAGACCAAGCGCAAACTGCGCGAAATGGGCGCGATGGCCCTGCTGGAGGCACTCGAGGCCCAAGACGAGGATCT
GACCATGGGAATGAGCTTCGACGAACGGTTGCGACTGGTCGTCGATGAAGCCCATTCGGTATTCAATCACGCCAAAATCGAGGGACTCATCCGCAGGGCC
GGGTTGCGCTACCCGGCAGCCGACCTGCGTCAACTCGATAGGGTCGATGAACGCGGCCTGGATCGGAACGTGATCGCCCAGCTGGGGACCTGCAGTTTCA
TCGAGCGGGGCCAGAACGTCGTGTTCCAAGGGTTCACCGGTTCCGGGAAATCGTACCTGGGGTGCGCCTTGGCCAAACGGGCCTGCCAGCACCGGATCCG
TGCGCACTATATTCGCATGCCTGATCTTGAAGAAGCTTGGGCGCAGGCGTTGGACAAACCGATGGGCACGACGAAGTTCTTGAAGAAGTACGCCGCGTTC
AGCGTTCTCGTGATAGACGAATGGTTGCTCGATCATCCGGATGAGTCGATGCGCAGCATGCTGTTGGAACTGCTCGAACGCCGCTACGACTGTGCGTCGA
CGGTGTTCTGCACCCAGTATGCGAAGAAGGACTGGCATCAACGACTCGGATCCGGAGTCCACGCGGATGCGATCATGGACCGGATCGTGCACAACACGGT
CTGGGTCGAGACCGGCAGTCACAACATGAGAGAACATGCTGCTTTGAACCCGTGACGATGAGCTGATGGGCGGCCAGTGGCCCCGAGGTCCACGGCTGCT
GGCCCCCACAGGCAATATCGGTGGTCCCCAACCGCACGATCGGGTGGTCCCCAAAGCTTCAAATACTCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1551 bp516 aa1621712+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVRKIRAKLVLQLRAEGLSGRAIAGSQAMSRKSVTQVLEAADAAGLGWDDVKDRADSEVYGLLFPGRGDHHSVFAQPDWKAIHKEMARVGVTLKLLHGEY
ADECAAAGDPAMSYDRFCRTYQRHVLVTGAASRVGHKAAQTIEVDWSGPTMQLHTGADKPKTVYLFVACLPFSRYAFVHPSLDMSQDSWLRAHVAMFTAF
GGSTPRIVPDNLKTGVITHPRDGEIVLNDAYREMAAHYSAAVLPGRIRAPKDKASVENTVGHVATWVIAGLRDRRFTSLPTLTAAIEERVCAYNAEPFQK
RPGSRLSVFTTEEEPLLTPLPQVAYEISQWIYGRRVARNGHVSWARNYYSVPFEHIGSKVDLRITDRSLEVYRGDQRVTTHLLLPETAVNEYRTNDADLP
AGDRYQQWDAARIRQWAERIGASTLVVINRIFESVAIDEQGVNPALAVLRLSRRYSADRVEAACRITLAGPVRSPRYAHVQPLLATGQDQTRPARTEPVE
HGGYVRGASYYAGGTR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
747 bp248 aa17092455+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MTSIDTETKRKLREMGAMALLEALEAQDEDLTMGMSFDERLRLVVDEAHSVFNHAKIEGLIRRAGLRYPAADLRQLDRVDERGLDRNVIAQLGTCSFIER
GQNVVFQGFTGSGKSYLGCALAKRACQHRIRAHYIRMPDLEEAWAQALDKPMGTTKFLKKYAAFSVLVIDEWLLDHPDESMRSMLLELLERRYDCASTVF
CTQYAKKDWHQRLGSGVHADAIMDRIVHNTVWVETGSHNMREHAALNP

 

Blast result :
Comments
ISBli7 is 77% aa (transposase) similar to ISAar36.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.