ISPmi2
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Proteus mirabilis | Proteus mirabilis Proteus mirabilis Pm2CHAMA |
DNA section
IS Length : 1592 bp
Ends
IR Length : 21/35
IRL : CCCTGTGTGTCAACATTAGCCTGAACCACTTGTTTTGCAGATAACATACA
IRR : CGGAACGTGTCAACCTCATTTGAACCACTTTCTTAAAAATTAAATTGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAACCCAT | CGAC | CTTTACCATC | 4 |
DNA sequence
CCCTGTGTGTCAACATTAGCCTGAACCACTTGTTTTGCAGATAACATACAAATCAGGGTCGTCAGGAGAGTGAACATGCCAAAGCCAGCCACCGTCATTG
AGTCCAAGGTTGAACCCAACCCCGCGCTGGAAAAGCGTACCCGCCGTGTCTTTACGGCAGACTACAAGTTGTCCATCCTGCAACAGGCTGACGCCTGTCA
GCACGGTGAATTGGGTGACCTGCTGCGCCGGGAAAAGCTCTATTCAAACCAGCTCGCGCAGTGGCGTCGTGAGTTTGCCGATCAAGGGGTGGCGGGTCTG
GCCAAGTCCGCGCCCGGCCCCGCCTCCACGAAAAATCCCGATCATCAGCGTATTGCCCAACTGGAAAAAGAAAACGAGCGACTGCGCAAGCAGATTGCCA
TGAAAGATGGTTGCCTGATGCTCCAAAAAAAAGCCTTGGCAATGCTCGAGAGCTTCGAACAGAGCGCCTCATGAACCTGCTCATTGACGATCAGCTGCCC
GCGCACGTGTCGGAACGTCAGGCCTGTGACGCGTTGAACCTGTGCCGTAACAGTCTGCGTGCCGCCCGCGCCCGTGCCCGGTTTTGTGGCCCGGTCAGCC
CGCATCGCCACCGGCGCCGCCCGGCGCCACAACCGCGCGCGTTAAGCGAGGCGGAACGTACGCAGGTGGTGCAGGTTTTGACCAGCGATCACTACCAGGA
TCAACCCCCGGCGCAGGTGTATTACGACCTCTTGCAACAGGGCACGTACCTGTGTTCCGTGTCCACCATGCATCGGCTGATGCGTGCAGAGGGGCTTAAC
GGCGAACGTCGGCCACAGCGACCACGCAGTGCGCAACCGATACCGCGTTTGCTGGCAACCGCGCCCAATCAGGTCTGGACCTGGGACATTGCCAAACTGC
CGACCCAACGCCGTGGCGAGTATCTGTCACTGTATGTTGTGATGGACTTGTTCAGTCGTCATATTGTGGCCTGGATGCTGTCGCGCAAGGAGAACAGCGC
CCTGTCGAGCCAACTGATTGAGCAGGCGTACGAACGCTACGGTATTGCACCGAACAGCCTGACGTTGCACCAGGACCGCGGTGTGCCTATGACGGCGCAT
TGCTATCTGGATCTGTTGGGTGAGCTGGCCATTACGGCCAGTCATAGCCGTCCACGAGTGAGCAATGACAATGCCATGAGCGAGTCCCAGTTCAAAACCA
TGAAATATCAGCCCGACTACCCGCGCCGCTTTGACAACTACGGCCATGCCCTGCGCTGGTGCGATGACTATACGCAGTGGTACAGCCATCAACATCACCA
TAGCGCGCTGGCCGGGTTTACGCCGTATCAGGTGTTCAGTGGTGAATACCTTGAAATCGCTCAGGTCAGGCAGGCTGCGCTGGATGCCATGTATGAACGC
CATCCTGAACGCTTTACCCAGGGCCGACCCACGGTGCAGATGCCGCCGATTAAAGTGTGTATCAACCCGGTACCGGAGGATGCCGACCCAGCCACCCTTG
AAAAAGGCGTCAACTTCCCGACCCTGCCACGGGTCATGGCAAAAACAATTTAATTTTTAAGAAAGTGGTTCAAATGAGGTTGACACGTTCCG
AGTCCAAGGTTGAACCCAACCCCGCGCTGGAAAAGCGTACCCGCCGTGTCTTTACGGCAGACTACAAGTTGTCCATCCTGCAACAGGCTGACGCCTGTCA
GCACGGTGAATTGGGTGACCTGCTGCGCCGGGAAAAGCTCTATTCAAACCAGCTCGCGCAGTGGCGTCGTGAGTTTGCCGATCAAGGGGTGGCGGGTCTG
GCCAAGTCCGCGCCCGGCCCCGCCTCCACGAAAAATCCCGATCATCAGCGTATTGCCCAACTGGAAAAAGAAAACGAGCGACTGCGCAAGCAGATTGCCA
TGAAAGATGGTTGCCTGATGCTCCAAAAAAAAGCCTTGGCAATGCTCGAGAGCTTCGAACAGAGCGCCTCATGAACCTGCTCATTGACGATCAGCTGCCC
GCGCACGTGTCGGAACGTCAGGCCTGTGACGCGTTGAACCTGTGCCGTAACAGTCTGCGTGCCGCCCGCGCCCGTGCCCGGTTTTGTGGCCCGGTCAGCC
CGCATCGCCACCGGCGCCGCCCGGCGCCACAACCGCGCGCGTTAAGCGAGGCGGAACGTACGCAGGTGGTGCAGGTTTTGACCAGCGATCACTACCAGGA
TCAACCCCCGGCGCAGGTGTATTACGACCTCTTGCAACAGGGCACGTACCTGTGTTCCGTGTCCACCATGCATCGGCTGATGCGTGCAGAGGGGCTTAAC
GGCGAACGTCGGCCACAGCGACCACGCAGTGCGCAACCGATACCGCGTTTGCTGGCAACCGCGCCCAATCAGGTCTGGACCTGGGACATTGCCAAACTGC
CGACCCAACGCCGTGGCGAGTATCTGTCACTGTATGTTGTGATGGACTTGTTCAGTCGTCATATTGTGGCCTGGATGCTGTCGCGCAAGGAGAACAGCGC
CCTGTCGAGCCAACTGATTGAGCAGGCGTACGAACGCTACGGTATTGCACCGAACAGCCTGACGTTGCACCAGGACCGCGGTGTGCCTATGACGGCGCAT
TGCTATCTGGATCTGTTGGGTGAGCTGGCCATTACGGCCAGTCATAGCCGTCCACGAGTGAGCAATGACAATGCCATGAGCGAGTCCCAGTTCAAAACCA
TGAAATATCAGCCCGACTACCCGCGCCGCTTTGACAACTACGGCCATGCCCTGCGCTGGTGCGATGACTATACGCAGTGGTACAGCCATCAACATCACCA
TAGCGCGCTGGCCGGGTTTACGCCGTATCAGGTGTTCAGTGGTGAATACCTTGAAATCGCTCAGGTCAGGCAGGCTGCGCTGGATGCCATGTATGAACGC
CATCCTGAACGCTTTACCCAGGGCCGACCCACGGTGCAGATGCCGCCGATTAAAGTGTGTATCAACCCGGTACCGGAGGATGCCGACCCAGCCACCCTTG
AAAAAGGCGTCAACTTCCCGACCCTGCCACGGGTCATGGCAAAAACAATTTAATTTTTAAGAAAGTGGTTCAAATGAGGTTGACACGTTCCG
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 76 | 474 | + | No |
Description : First part of the transposase
ORF sequence :
MPKPATVIESKVEPNPALEKRTRRVFTADYKLSILQQADACQHGELGDLLRREKLYSNQLAQWRREFADQGVAGLAKSAPGPASTKNPDHQRIAQLEKEN
ERLRKQIAMKDGCLMLQKKALAMLESFEQSAS
ERLRKQIAMKDGCLMLQKKALAMLESFEQSAS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 273 | 1553 | + | No |
Description : Second part of the transposase
ORF sequence :
VCRSRGGGSGQVRARPRLHEKSRSSAYCPTGKRKRATAQADCHERWLPDAPKKSLGNARELRTERLMNLLIDDQLPAHVSERQACDALNLCRNSLRAARA
RARFCGPVSPHRHRRRPAPQPRALSEAERTQVVQVLTSDHYQDQPPAQVYYDLLQQGTYLCSVSTMHRLMRAEGLNGERRPQRPRSAQPIPRLLATAPNQ
VWTWDIAKLPTQRRGEYLSLYVVMDLFSRHIVAWMLSRKENSALSSQLIEQAYERYGIAPNSLTLHQDRGVPMTAHCYLDLLGELAITASHSRPRVSNDN
AMSESQFKTMKYQPDYPRRFDNYGHALRWCDDYTQWYSHQHHHSALAGFTPYQVFSGEYLEIAQVRQAALDAMYERHPERFTQGRPTVQMPPIKVCINPV
PEDADPATLEKGVNFPTLPRVMAKTI
RARFCGPVSPHRHRRRPAPQPRALSEAERTQVVQVLTSDHYQDQPPAQVYYDLLQQGTYLCSVSTMHRLMRAEGLNGERRPQRPRSAQPIPRLLATAPNQ
VWTWDIAKLPTQRRGEYLSLYVVMDLFSRHIVAWMLSRKENSALSSQLIEQAYERYGIAPNSLTLHQDRGVPMTAHCYLDLLGELAITASHSRPRVSNDN
AMSESQFKTMKYQPDYPRRFDNYGHALRWCDDYTQWYSHQHHHSALAGFTPYQVFSGEYLEIAQVRQAALDAMYERHPERFTQGRPTVQMPPIKVCINPV
PEDADPATLEKGVNFPTLPRVMAKTI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1478 bp | 492 aa | 76 | 1553 | + | Yes |
Chemistry : DDE
ORF sequence :
MPKPATVIESKVEPNPALEKRTRRVFTADYKLSILQQADACQHGELGDLLRREKLYSNQLAQWRREFADQGVAGLAKSAPGPASTKNPDHQRIAQLEKEN
ERLRKQIAMKDGCLMLQKKSLGNARELRTERLMNLLIDDQLPAHVSERQACDALNLCRNSLRAARARARFCGPVSPHRHRRRPAPQPRALSEAERTQVVQ
VLTSDHYQDQPPAQVYYDLLQQGTYLCSVSTMHRLMRAEGLNGERRPQRPRSAQPIPRLLATAPNQVWTWDIAKLPTQRRGEYLSLYVVMDLFSRHIVAW
MLSRKENSALSSQLIEQAYERYGIAPNSLTLHQDRGVPMTAHCYLDLLGELAITASHSRPRVSNDNAMSESQFKTMKYQPDYPRRFDNYGHALRWCDDYT
QWYSHQHHHSALAGFTPYQVFSGEYLEIAQVRQAALDAMYERHPERFTQGRPTVQMPPIKVCINPVPEDADPATLEKGVNFPTLPRVMAKTI
ERLRKQIAMKDGCLMLQKKSLGNARELRTERLMNLLIDDQLPAHVSERQACDALNLCRNSLRAARARARFCGPVSPHRHRRRPAPQPRALSEAERTQVVQ
VLTSDHYQDQPPAQVYYDLLQQGTYLCSVSTMHRLMRAEGLNGERRPQRPRSAQPIPRLLATAPNQVWTWDIAKLPTQRRGEYLSLYVVMDLFSRHIVAW
MLSRKENSALSSQLIEQAYERYGIAPNSLTLHQDRGVPMTAHCYLDLLGELAITASHSRPRVSNDNAMSESQFKTMKYQPDYPRRFDNYGHALRWCDDYT
QWYSHQHHHSALAGFTPYQVFSGEYLEIAQVRQAALDAMYERHPERFTQGRPTVQMPPIKVCINPVPEDADPATLEKGVNFPTLPRVMAKTI
Blast result :
Comments
ISPmi2 is 55% aa similar to ISAnsp11 (41% aa identity to ISAnsp11).
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The ISPmi2 ends are not classic for this ISs family (IS3).
This IS has unperfect IRs and begins with CC instead of TG.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The ISPmi2 ends are not classic for this ISs family (IS3).
This IS has unperfect IRs and begins with CC instead of TG.
References
1] Siebor E. (2017) Direct submission to ISfinder