ISHahy7
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002304 | ND | Halanaerobium hydrogeniformans | Halanaerobium hydrogeniformans |
DNA section
IS Length : 1327 bp
Ends
IR Length : 22/31
IRL : AGTAGTGTACAATAAGTTGTGTAAATAGATTTTTTTCAATAAAAAAAGAG
IRR : GATAACGTCAAGAATCTTGTGTAAATAAATCAGTATCGTTCTTTAAATAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAAATTCATAAAAACCTCCATAATAAATAAC | GGTGATTT | TAATTAATACTCTTAAATCTAATTATATTATA | 8 |
AAAAATATTAAGTAAAGTTCTTTTTTTAAAGG | AGGTCTTT | AACAATGAAATATGATATTTTTGCAGTTGGAG | 8 |
CATTTTGACAGTAAAGAAGAACTCTTTAGAGA | AATTGTTT | TATCAGGTTTCGATTATTTTAATCAAAAGTTT | 8 |
TGTCCATAATAAAATAAAAATTATGGGCAGGT | GAAAAAGG | TGATAAAATTGAATGAAAAAGCCGATATTCTA | 8 |
ACAACTATTTATATTTTTTCTTTAATTTGTTA | TTTTACAA | AGTCAATTTATTATATCAATTAAAACAATTAA | 8 |
DNA sequence
AGTAGTGTACAATAAGTTGTGTAAATAGATTTTTTTCAATAAAAAAAGAGGAATCCTTCTTTGAATGGTTGAAATATTTATTAGCGAAATAAACTCAACC
CAAAGGAGGACTCCTCATGAACAGTATACCCGAAAAAAACAGTGATGGTCAAGTTGAATTTCACGATTTAATCATTGAACTCATCAAAAATTTTCTCGAG
AATTTCCTCAAGGCTGAATTAACTGAATTTCTAAACTATGAAAAACATGAATACTCAGGTAGAAACTCTGGCAATAGTCGTAATGGATCTTATCTTCGTG
ATTTCTTAACTCAGTTTGGCAGTATTAAAGGCTTAAATGTTCCTAGAGATAGAAATGGTGAATTCCAAACTGAACTATTCCAACCATATAAACGCTATGA
TAACTGGCTTGAAGAAGCTATAATAAACATGTATGCTAATGGCCTTTCCACCCGCTATGTAGCTGATTGGATAGAGCAGATGTATGGACAAAAATATAGC
CCTACTACTATTAGTAATCTAACTAATGTTGCTCTTGAAGAGGTTAAAAAGTGGAAAGAAAGACCACTTCAAAAACGGTACAGCGTTATTTTTATTGATG
GCATGAGCATAAAAGTCAGACGAGATACTGTTGCAAATGAATCTGTATATATTATCATTGGTATCAATGAAGACGGCTATCGTGAAATACTTGATTTCTA
CATTGGTGCAACTGAATCTGCTGCTTTATGGGAAGAAGTACTAAGTAATTTAAAAGAACGCGGAGTCCAGGAAGTCCTACTAGGTGTTATAGATGGACTC
CCAGGACTTAAAGATTCTTTTCTAAAAGTATTCCCTAAAGCGGATGTGCAGCGTTGTATAGTTCATAAAGTGCGTAATACAATAGTCAAAGTTAGAAAAA
AAGATACTGATGAAATCGTTAAAGATTTAAAAAAGATCTATAGATCTCCCAGCAGAGAGTTTGCAGAAAAAGCTTTAGAAGAATTTGATTTTAAATGGAG
TAAAATCTATCCTAAAGTTACTCAAAGCTGGTACGTAGATAAAGATGAACTATTAACATTTTATAAATATCCAGAAAGCATACATAAAGCCATATACACA
ACAAACTGGATTGAAAGAGCCAATAAAGAAATCAAAAAAAGATTAAAGCCTATGAATAGTTTGCCTAATGTACAAGCAGCTGAAAAAATAATTTATTTAA
AGATTATTGAGTACAACTCAAAATGGTCTGATAGAAAGATGAGAGGATTTTTAGCTGCAAAAGATCAGCTCCATCAACTATTTAAAGAACGATACTGATT
TATTTACACAAGATTCTTGACGTTATC
CAAAGGAGGACTCCTCATGAACAGTATACCCGAAAAAAACAGTGATGGTCAAGTTGAATTTCACGATTTAATCATTGAACTCATCAAAAATTTTCTCGAG
AATTTCCTCAAGGCTGAATTAACTGAATTTCTAAACTATGAAAAACATGAATACTCAGGTAGAAACTCTGGCAATAGTCGTAATGGATCTTATCTTCGTG
ATTTCTTAACTCAGTTTGGCAGTATTAAAGGCTTAAATGTTCCTAGAGATAGAAATGGTGAATTCCAAACTGAACTATTCCAACCATATAAACGCTATGA
TAACTGGCTTGAAGAAGCTATAATAAACATGTATGCTAATGGCCTTTCCACCCGCTATGTAGCTGATTGGATAGAGCAGATGTATGGACAAAAATATAGC
CCTACTACTATTAGTAATCTAACTAATGTTGCTCTTGAAGAGGTTAAAAAGTGGAAAGAAAGACCACTTCAAAAACGGTACAGCGTTATTTTTATTGATG
GCATGAGCATAAAAGTCAGACGAGATACTGTTGCAAATGAATCTGTATATATTATCATTGGTATCAATGAAGACGGCTATCGTGAAATACTTGATTTCTA
CATTGGTGCAACTGAATCTGCTGCTTTATGGGAAGAAGTACTAAGTAATTTAAAAGAACGCGGAGTCCAGGAAGTCCTACTAGGTGTTATAGATGGACTC
CCAGGACTTAAAGATTCTTTTCTAAAAGTATTCCCTAAAGCGGATGTGCAGCGTTGTATAGTTCATAAAGTGCGTAATACAATAGTCAAAGTTAGAAAAA
AAGATACTGATGAAATCGTTAAAGATTTAAAAAAGATCTATAGATCTCCCAGCAGAGAGTTTGCAGAAAAAGCTTTAGAAGAATTTGATTTTAAATGGAG
TAAAATCTATCCTAAAGTTACTCAAAGCTGGTACGTAGATAAAGATGAACTATTAACATTTTATAAATATCCAGAAAGCATACATAAAGCCATATACACA
ACAAACTGGATTGAAAGAGCCAATAAAGAAATCAAAAAAAGATTAAAGCCTATGAATAGTTTGCCTAATGTACAAGCAGCTGAAAAAATAATTTATTTAA
AGATTATTGAGTACAACTCAAAATGGTCTGATAGAAAGATGAGAGGATTTTTAGCTGCAAAAGATCAGCTCCATCAACTATTTAAAGAACGATACTGATT
TATTTACACAAGATTCTTGACGTTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1182 bp | 393 aa | 117 | 1298 | + | No |
Chemistry : DDE
ORF sequence :
MNSIPEKNSDGQVEFHDLIIELIKNFLENFLKAELTEFLNYEKHEYSGRNSGNSRNGSYLRDFLTQFGSIKGLNVPRDRNGEFQTELFQPYKRYDNWLEE
AIINMYANGLSTRYVADWIEQMYGQKYSPTTISNLTNVALEEVKKWKERPLQKRYSVIFIDGMSIKVRRDTVANESVYIIIGINEDGYREILDFYIGATE
SAALWEEVLSNLKERGVQEVLLGVIDGLPGLKDSFLKVFPKADVQRCIVHKVRNTIVKVRKKDTDEIVKDLKKIYRSPSREFAEKALEEFDFKWSKIYPK
VTQSWYVDKDELLTFYKYPESIHKAIYTTNWIERANKEIKKRLKPMNSLPNVQAAEKIIYLKIIEYNSKWSDRKMRGFLAAKDQLHQLFKERY
AIINMYANGLSTRYVADWIEQMYGQKYSPTTISNLTNVALEEVKKWKERPLQKRYSVIFIDGMSIKVRRDTVANESVYIIIGINEDGYREILDFYIGATE
SAALWEEVLSNLKERGVQEVLLGVIDGLPGLKDSFLKVFPKADVQRCIVHKVRNTIVKVRKKDTDEIVKDLKKIYRSPSREFAEKALEEFDFKWSKIYPK
VTQSWYVDKDELLTFYKYPESIHKAIYTTNWIERANKEIKKRLKPMNSLPNVQAAEKIIYLKIIEYNSKWSDRKMRGFLAAKDQLHQLFKERY
Blast result :
Comments
ISHahy7 is 68% aa similar to IS654.
References
1] Bassett K. (2017) Direct Submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683