ISHahy7

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1327 bp

Ends


IR Length : 22/31

IRL : AGTAGTGTACAATAAGTTGTGTAAATAGATTTTTTTCAATAAAAAAAGAG
IRR : GATAACGTCAAGAATCTTGTGTAAATAAATCAGTATCGTTCTTTAAATAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAAATTCATAAAAACCTCCATAATAAATAACGGTGATTTTAATTAATACTCTTAAATCTAATTATATTATA8
AAAAATATTAAGTAAAGTTCTTTTTTTAAAGGAGGTCTTTAACAATGAAATATGATATTTTTGCAGTTGGAG8
CATTTTGACAGTAAAGAAGAACTCTTTAGAGAAATTGTTTTATCAGGTTTCGATTATTTTAATCAAAAGTTT8
TGTCCATAATAAAATAAAAATTATGGGCAGGTGAAAAAGGTGATAAAATTGAATGAAAAAGCCGATATTCTA8
ACAACTATTTATATTTTTTCTTTAATTTGTTATTTTACAAAGTCAATTTATTATATCAATTAAAACAATTAA8

DNA sequence

AGTAGTGTACAATAAGTTGTGTAAATAGATTTTTTTCAATAAAAAAAGAGGAATCCTTCTTTGAATGGTTGAAATATTTATTAGCGAAATAAACTCAACC
CAAAGGAGGACTCCTCATGAACAGTATACCCGAAAAAAACAGTGATGGTCAAGTTGAATTTCACGATTTAATCATTGAACTCATCAAAAATTTTCTCGAG
AATTTCCTCAAGGCTGAATTAACTGAATTTCTAAACTATGAAAAACATGAATACTCAGGTAGAAACTCTGGCAATAGTCGTAATGGATCTTATCTTCGTG
ATTTCTTAACTCAGTTTGGCAGTATTAAAGGCTTAAATGTTCCTAGAGATAGAAATGGTGAATTCCAAACTGAACTATTCCAACCATATAAACGCTATGA
TAACTGGCTTGAAGAAGCTATAATAAACATGTATGCTAATGGCCTTTCCACCCGCTATGTAGCTGATTGGATAGAGCAGATGTATGGACAAAAATATAGC
CCTACTACTATTAGTAATCTAACTAATGTTGCTCTTGAAGAGGTTAAAAAGTGGAAAGAAAGACCACTTCAAAAACGGTACAGCGTTATTTTTATTGATG
GCATGAGCATAAAAGTCAGACGAGATACTGTTGCAAATGAATCTGTATATATTATCATTGGTATCAATGAAGACGGCTATCGTGAAATACTTGATTTCTA
CATTGGTGCAACTGAATCTGCTGCTTTATGGGAAGAAGTACTAAGTAATTTAAAAGAACGCGGAGTCCAGGAAGTCCTACTAGGTGTTATAGATGGACTC
CCAGGACTTAAAGATTCTTTTCTAAAAGTATTCCCTAAAGCGGATGTGCAGCGTTGTATAGTTCATAAAGTGCGTAATACAATAGTCAAAGTTAGAAAAA
AAGATACTGATGAAATCGTTAAAGATTTAAAAAAGATCTATAGATCTCCCAGCAGAGAGTTTGCAGAAAAAGCTTTAGAAGAATTTGATTTTAAATGGAG
TAAAATCTATCCTAAAGTTACTCAAAGCTGGTACGTAGATAAAGATGAACTATTAACATTTTATAAATATCCAGAAAGCATACATAAAGCCATATACACA
ACAAACTGGATTGAAAGAGCCAATAAAGAAATCAAAAAAAGATTAAAGCCTATGAATAGTTTGCCTAATGTACAAGCAGCTGAAAAAATAATTTATTTAA
AGATTATTGAGTACAACTCAAAATGGTCTGATAGAAAGATGAGAGGATTTTTAGCTGCAAAAGATCAGCTCCATCAACTATTTAAAGAACGATACTGATT
TATTTACACAAGATTCTTGACGTTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1182 bp393 aa1171298+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNSIPEKNSDGQVEFHDLIIELIKNFLENFLKAELTEFLNYEKHEYSGRNSGNSRNGSYLRDFLTQFGSIKGLNVPRDRNGEFQTELFQPYKRYDNWLEE
AIINMYANGLSTRYVADWIEQMYGQKYSPTTISNLTNVALEEVKKWKERPLQKRYSVIFIDGMSIKVRRDTVANESVYIIIGINEDGYREILDFYIGATE
SAALWEEVLSNLKERGVQEVLLGVIDGLPGLKDSFLKVFPKADVQRCIVHKVRNTIVKVRKKDTDEIVKDLKKIYRSPSREFAEKALEEFDFKWSKIYPK
VTQSWYVDKDELLTFYKYPESIHKAIYTTNWIERANKEIKKRLKPMNSLPNVQAAEKIIYLKIIEYNSKWSDRKMRGFLAAKDQLHQLFKERY

 

Blast result :
Comments
ISHahy7 is 68% aa similar to IS654.
References
1] Bassett K. (2017) Direct Submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683