ISHahy6

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1713 bp

Ends


IR Length : 14/19

IRL : TGTTACGTCAAATCTAATAGTTTTTTCAAAAATATTAATAGTTATCATAG
IRR : GATAACGTCAAATAAAATATGATAGTTACCATAAAATGTAAGCAAATAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCCTCCTTTAAAAGTTTTAATCTAATTCCA8
TTTCCTCCAATATAATTAGATAAGCATATTTT8
TTACCTCCAAAAAATATATAAGTATTTAACCT8
ATTCCTTTATCAAGTAAATTTTATGCTGTATA8
TCTCCTCCATATTTAAATTATCGTTCTAATTA8
ATACCTCCATATATTATTCCCGTTCTGTTAAG8

DNA sequence

TGTTACGTCAAATCTAATAGTTTTTTCAAAAATATTAATAGTTATCATAGTTGTCAGGCTAGGAATCTCCATAAAAAGAAGGAATCCCTCCCCCTGAGCT
AGTAAATAGTAATTGAGAAAGTCACAACCTACTAGACCCAGAAAGGAAGGGATGTAAGTTATGTTTTCTCGAAAAATACCTAATTTCCTGCTTAAACCTA
TCATGAATTTTGTTCTTTTGACCTATCTTTTTTTCGCCAGACTTTTCCAGGTTGATTTTGAACCCAATAATAAACTCGATGATAGTTATACTAAATTTAA
CAGTTTTGATGACCCACAACCTATTATAGAATATAATCAGGTTGACTATCGCGATATTCTAGCTGAAGCTGAAAAAAATGGTGAAACTATTCAGCCTGTT
AATCGCAATAAACCTCTAACTGTAAAGGTTGAGGAGTGCTCTCAATGTGGAGCTCCCAAAAAATATCTCTACAGTTTCGGTCATGATCCAGATGGATACC
AAAAGTTCCAGTGTAAACTCTGTAAACATCAGTGGGCTCCTAAGAAACCTAAAAAACCTAAGAACCACCCTACATATCGCTGTCCTTTCTGCAACTATGC
TCTTGCTAAAGAGAAAAAGCGCAAGCATTTTACCAAGTATAAATGCCGCAATGATGACTGTTCTAAATGGAAAAATGAACATAAGCGTTATCGCTACAGA
GCCTATAATTTTGATATCAATAAGCTTGAACTTTCCAGACCTGATAAAGAACCTGTTAACCTTGATCATTCTCACTATGGAAACTTTACCATCTCTAAGG
CTATTGACTTTTATGTCAGTCTTGGTCTTTCTTTAAGACAGGCTGAAAGAGCTCTTAAACTTGCCTATGGTGTTTCACCTTCAGCTCAAACCATCCAAAA
TTGGACTGTCTCTTTAGCTTACAGACTTGCTCCTAAAATCAATGAGCTTGATCTGCCTTTATCTGGTATTGTTGCTGTTGATGAAACATATATTAAAATA
AAAGGCAGCTGGCATTATCTTTTTACTGCCATAGATGGTGAAAATGGCTGTGTTATCGCTCAGCATCTTTCTAAAAATCGCGACGCTAAAGGTGCAATAA
CCATTTTAAAAAGAATAATCGACCAATATCAAGACCAAAAATTTGTTCTAGTTACTGATATGGCTCCAATTTACAGAGCTGCTGTCCATGCTGCTAAAGT
GTTTTTGAAAACCAATATTGACCACAAACAACTTAAGGGGCTATTTGCTAACGATGATAACTCAGATGAAATTTACAGACCTTATAAAAACATCATTGAA
AGGTTTTTCGGTACTTATAAAGCCCATTACAAACGCCATAAAAGCTTTAGCTCTTTTGATGGTGCACTTACTCATATAACTCTTTATCAGCTCTATTTTA
ATTATTTAAAACCTCATAGTTCCTTTAATGATAAACCACCACTGATAGTGGAAGGAGCAAGAGGTCAGCCTATCGAATCCTGGGCCCAACTTATCAGATG
GATCACCAAAACTGATAGGTAATTAAATATCTTTTAGAAAAATCATGTTTTATCTCTTTAGATATTTATAATCACTAAATACCATTTTCTTACTTTATTT
ACAACTTTAAACTTTTGACATTCTGATCATTTTCATTATAATCGTAATTAGTGGTGCTCTATTACTATTTGCTTACATTTTATGGTAACTATCATATTTT
ATTTGACGTTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp453 aa1611522+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFSRKIPNFLLKPIMNFVLLTYLFFARLFQVDFEPNNKLDDSYTKFNSFDDPQPIIEYNQVDYRDILAEAEKNGETIQPVNRNKPLTVKVEECSQCGAPK
KYLYSFGHDPDGYQKFQCKLCKHQWAPKKPKKPKNHPTYRCPFCNYALAKEKKRKHFTKYKCRNDDCSKWKNEHKRYRYRAYNFDINKLELSRPDKEPVN
LDHSHYGNFTISKAIDFYVSLGLSLRQAERALKLAYGVSPSAQTIQNWTVSLAYRLAPKINELDLPLSGIVAVDETYIKIKGSWHYLFTAIDGENGCVIA
QHLSKNRDAKGAITILKRIIDQYQDQKFVLVTDMAPIYRAAVHAAKVFLKTNIDHKQLKGLFANDDNSDEIYRPYKNIIERFFGTYKAHYKRHKSFSSFD
GALTHITLYQLYFNYLKPHSSFNDKPPLIVEGARGQPIESWAQLIRWITKTDR

 

Blast result :
Comments
ISHahy6 is 47% aa similar to ISCpe7.
References
1] Bassett K. (2017) Direct Submission to ISfinder
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683