ISBli6

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CP017150 ND Brevibacterium linens
Brevibacterium linens SMQ-1335
Brevibacterium aurantiacum
DNA section
IS Length : 1424 bp

Ends


Left end : GGCTCTTCACTATAGATCTTGTGGACTAGTTAGTCTGACTTCTCGAAGGACGTGGCGGTCTCTACCAAACGGATCGATGATGGTCTTGTGGTCGGGTCTG
Right end : CGAGACTCTTCATCCCAGAAAAGAGGTGGCCGCCGCTTGACGAAACACTATAGGAGTGTCGTAAACGAGAGTGTAGGTCGGTGATTCCAGATCACGGCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCCCGATGTCGTACTACGACCCGAGCGCCTCGGGTTCG0
ATGTTAAGTCACTGAAATACACCCGAGCGCCTCGGGTTCG0
TTTCAAATCGCAATATAAGAGTCGCTGCCCGGATAGACGT0

DNA sequence

GGCTCTTCACTATAGATCTTGTGGACTAGTTAGTCTGACTTCTCGAAGGACGTGGCGGTCTCTACCAAACGGATCGATGATGGTCTTGTGGTCGGGTCTG
ACTCATGGCTCTTCTGACACCCCGCTGTCTGGGGTTGTCCTGTTTACGACGTGTCGACTGGCTCGGCTCACTGTAATAAGTGCAGCCCAGCAGGCCGTCA
TGTCCTGATAGGAGTCTGGCGTGTCCCCGATAGTGAACTGACTGACGCCGGCTGAGCTGCGCACCCGAGAACTCGAAAAGAAGGGGCGCAGTTCCCATGA
TGAACGATAAGCAGGTTAAGGTCTACGGCGGGATCGACACGCACGCGGACACACATCACCTCGCGGTGATCGACCAAGCCGGACGCCGGCTGGCTGATGC
CCAAATACCGACTACCGCGACTGGATACCAGGCAGCATTGCGGTTCTTGGGTTCCTGGCCTGGATTGGTCAGCGTGGGCATCGAGTGCACCGGCTCCTAT
GGAGCCGCGGTCACCCGAGTTGTGCGGGAGGCAGGCATCACAGTGTTCGAGGTGAATCGACCCAACCGGTTCGACCGGCGACTCCACGGCAAGAGCGATC
CCTTCGATGCTTATTCCGCCGCTGAAGCTGTGCTAGGTGGCAGAGCCAGCGCAGCGCCCAAGGGTGGGGACGGGCTGGTGGAGTCGCTACGAGTACTGCG
GACTTCAAGGTCCTCGGCGCTGCAGGCCCGGACTGCGACGATCAATCAGATTAAGGGGATGCTGATCACAGCCCCAGAGGATCTGCGTACACGTTACAAG
GGCCTGTCAACTCCCAAACTGATTGCAGCACTGGCGGCATCGCGACCAACAGCGACACCGGTCACCGCCGCCGAGGCCACGGCCTACAGCCTGCGGCTGC
TGGCCAGGCGCTGGCAAGCACTGACCGGGCAGATAGAGGACTTGGCTGGGCACCTGCAGCGACTACTGGACGACCACGCTCCCGACCTGATGAGGGTCTT
CGGCTGCGGCCGAGACACCGTCGCGCAACTGTTGATCACCGCCGGGGACAACCCTGATCGGCTACGTTCAGAAGCCGCGTTCGCAGCACTGGCCGGGGTC
TGCCCAATCCCGGCATCGTCGGGTAAGACTAAACGCCACCGACTCAACCGCGCTGGGGACCGGCAGGCAAACTCCGCGCTTTATCACATCGTGATGGTGC
GGCTGCGTTACAACCAGGAGACCCGCGACTACGTGGCGCGACGAACTGCTGAAGGCAAGACCAAGATGGAAATCATCCGTTGCCTGAAGCGTTACCTCGT
CCGCCAGCTCTACCCCCTCATCGTCGAGACTCTTCATCCCAGAAAAGAGGTGGCCGCCGCTTGACGAAACACTATAGGAGTGTCGTAAACGAGAGTGTAG
GTCGGTGATTCCAGATCACGGCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1068 bp355 aa2971364+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MMNDKQVKVYGGIDTHADTHHLAVIDQAGRRLADAQIPTTATGYQAALRFLGSWPGLVSVGIECTGSYGAAVTRVVREAGITVFEVNRPNRFDRRLHGKS
DPFDAYSAAEAVLGGRASAAPKGGDGLVESLRVLRTSRSSALQARTATINQIKGMLITAPEDLRTRYKGLSTPKLIAALAASRPTATPVTAAEATAYSLR
LLARRWQALTGQIEDLAGHLQRLLDDHAPDLMRVFGCGRDTVAQLLITAGDNPDRLRSEAAFAALAGVCPIPASSGKTKRHRLNRAGDRQANSALYHIVM
VRLRYNQETRDYVARRTAEGKTKMEIIRCLKRYLVRQLYPLIVETLHPRKEVAAA

 

Blast result :
Comments
ISBli6 is 65% aa similar to ISEc21.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.