ISBli6
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_CP017150 | ND | Brevibacterium linens | Brevibacterium linens SMQ-1335 Brevibacterium aurantiacum |
DNA section
IS Length : 1424 bp
Ends
Left end : GGCTCTTCACTATAGATCTTGTGGACTAGTTAGTCTGACTTCTCGAAGGACGTGGCGGTCTCTACCAAACGGATCGATGATGGTCTTGTGGTCGGGTCTG
Right end : CGAGACTCTTCATCCCAGAAAAGAGGTGGCCGCCGCTTGACGAAACACTATAGGAGTGTCGTAAACGAGAGTGTAGGTCGGTGATTCCAGATCACGGCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCCCGATGTCGTACTACG | ACCCGAGCGCCTCGGGTTCG | 0 | |
ATGTTAAGTCACTGAAATAC | ACCCGAGCGCCTCGGGTTCG | 0 | |
TTTCAAATCGCAATATAAGA | GTCGCTGCCCGGATAGACGT | 0 |
DNA sequence
GGCTCTTCACTATAGATCTTGTGGACTAGTTAGTCTGACTTCTCGAAGGACGTGGCGGTCTCTACCAAACGGATCGATGATGGTCTTGTGGTCGGGTCTG
ACTCATGGCTCTTCTGACACCCCGCTGTCTGGGGTTGTCCTGTTTACGACGTGTCGACTGGCTCGGCTCACTGTAATAAGTGCAGCCCAGCAGGCCGTCA
TGTCCTGATAGGAGTCTGGCGTGTCCCCGATAGTGAACTGACTGACGCCGGCTGAGCTGCGCACCCGAGAACTCGAAAAGAAGGGGCGCAGTTCCCATGA
TGAACGATAAGCAGGTTAAGGTCTACGGCGGGATCGACACGCACGCGGACACACATCACCTCGCGGTGATCGACCAAGCCGGACGCCGGCTGGCTGATGC
CCAAATACCGACTACCGCGACTGGATACCAGGCAGCATTGCGGTTCTTGGGTTCCTGGCCTGGATTGGTCAGCGTGGGCATCGAGTGCACCGGCTCCTAT
GGAGCCGCGGTCACCCGAGTTGTGCGGGAGGCAGGCATCACAGTGTTCGAGGTGAATCGACCCAACCGGTTCGACCGGCGACTCCACGGCAAGAGCGATC
CCTTCGATGCTTATTCCGCCGCTGAAGCTGTGCTAGGTGGCAGAGCCAGCGCAGCGCCCAAGGGTGGGGACGGGCTGGTGGAGTCGCTACGAGTACTGCG
GACTTCAAGGTCCTCGGCGCTGCAGGCCCGGACTGCGACGATCAATCAGATTAAGGGGATGCTGATCACAGCCCCAGAGGATCTGCGTACACGTTACAAG
GGCCTGTCAACTCCCAAACTGATTGCAGCACTGGCGGCATCGCGACCAACAGCGACACCGGTCACCGCCGCCGAGGCCACGGCCTACAGCCTGCGGCTGC
TGGCCAGGCGCTGGCAAGCACTGACCGGGCAGATAGAGGACTTGGCTGGGCACCTGCAGCGACTACTGGACGACCACGCTCCCGACCTGATGAGGGTCTT
CGGCTGCGGCCGAGACACCGTCGCGCAACTGTTGATCACCGCCGGGGACAACCCTGATCGGCTACGTTCAGAAGCCGCGTTCGCAGCACTGGCCGGGGTC
TGCCCAATCCCGGCATCGTCGGGTAAGACTAAACGCCACCGACTCAACCGCGCTGGGGACCGGCAGGCAAACTCCGCGCTTTATCACATCGTGATGGTGC
GGCTGCGTTACAACCAGGAGACCCGCGACTACGTGGCGCGACGAACTGCTGAAGGCAAGACCAAGATGGAAATCATCCGTTGCCTGAAGCGTTACCTCGT
CCGCCAGCTCTACCCCCTCATCGTCGAGACTCTTCATCCCAGAAAAGAGGTGGCCGCCGCTTGACGAAACACTATAGGAGTGTCGTAAACGAGAGTGTAG
GTCGGTGATTCCAGATCACGGCGC
ACTCATGGCTCTTCTGACACCCCGCTGTCTGGGGTTGTCCTGTTTACGACGTGTCGACTGGCTCGGCTCACTGTAATAAGTGCAGCCCAGCAGGCCGTCA
TGTCCTGATAGGAGTCTGGCGTGTCCCCGATAGTGAACTGACTGACGCCGGCTGAGCTGCGCACCCGAGAACTCGAAAAGAAGGGGCGCAGTTCCCATGA
TGAACGATAAGCAGGTTAAGGTCTACGGCGGGATCGACACGCACGCGGACACACATCACCTCGCGGTGATCGACCAAGCCGGACGCCGGCTGGCTGATGC
CCAAATACCGACTACCGCGACTGGATACCAGGCAGCATTGCGGTTCTTGGGTTCCTGGCCTGGATTGGTCAGCGTGGGCATCGAGTGCACCGGCTCCTAT
GGAGCCGCGGTCACCCGAGTTGTGCGGGAGGCAGGCATCACAGTGTTCGAGGTGAATCGACCCAACCGGTTCGACCGGCGACTCCACGGCAAGAGCGATC
CCTTCGATGCTTATTCCGCCGCTGAAGCTGTGCTAGGTGGCAGAGCCAGCGCAGCGCCCAAGGGTGGGGACGGGCTGGTGGAGTCGCTACGAGTACTGCG
GACTTCAAGGTCCTCGGCGCTGCAGGCCCGGACTGCGACGATCAATCAGATTAAGGGGATGCTGATCACAGCCCCAGAGGATCTGCGTACACGTTACAAG
GGCCTGTCAACTCCCAAACTGATTGCAGCACTGGCGGCATCGCGACCAACAGCGACACCGGTCACCGCCGCCGAGGCCACGGCCTACAGCCTGCGGCTGC
TGGCCAGGCGCTGGCAAGCACTGACCGGGCAGATAGAGGACTTGGCTGGGCACCTGCAGCGACTACTGGACGACCACGCTCCCGACCTGATGAGGGTCTT
CGGCTGCGGCCGAGACACCGTCGCGCAACTGTTGATCACCGCCGGGGACAACCCTGATCGGCTACGTTCAGAAGCCGCGTTCGCAGCACTGGCCGGGGTC
TGCCCAATCCCGGCATCGTCGGGTAAGACTAAACGCCACCGACTCAACCGCGCTGGGGACCGGCAGGCAAACTCCGCGCTTTATCACATCGTGATGGTGC
GGCTGCGTTACAACCAGGAGACCCGCGACTACGTGGCGCGACGAACTGCTGAAGGCAAGACCAAGATGGAAATCATCCGTTGCCTGAAGCGTTACCTCGT
CCGCCAGCTCTACCCCCTCATCGTCGAGACTCTTCATCCCAGAAAAGAGGTGGCCGCCGCTTGACGAAACACTATAGGAGTGTCGTAAACGAGAGTGTAG
GTCGGTGATTCCAGATCACGGCGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1068 bp | 355 aa | 297 | 1364 | + | No |
Chemistry : DEDD
ORF sequence :
MMNDKQVKVYGGIDTHADTHHLAVIDQAGRRLADAQIPTTATGYQAALRFLGSWPGLVSVGIECTGSYGAAVTRVVREAGITVFEVNRPNRFDRRLHGKS
DPFDAYSAAEAVLGGRASAAPKGGDGLVESLRVLRTSRSSALQARTATINQIKGMLITAPEDLRTRYKGLSTPKLIAALAASRPTATPVTAAEATAYSLR
LLARRWQALTGQIEDLAGHLQRLLDDHAPDLMRVFGCGRDTVAQLLITAGDNPDRLRSEAAFAALAGVCPIPASSGKTKRHRLNRAGDRQANSALYHIVM
VRLRYNQETRDYVARRTAEGKTKMEIIRCLKRYLVRQLYPLIVETLHPRKEVAAA
DPFDAYSAAEAVLGGRASAAPKGGDGLVESLRVLRTSRSSALQARTATINQIKGMLITAPEDLRTRYKGLSTPKLIAALAASRPTATPVTAAEATAYSLR
LLARRWQALTGQIEDLAGHLQRLLDDHAPDLMRVFGCGRDTVAQLLITAGDNPDRLRSEAAFAALAGVCPIPASSGKTKRHRLNRAGDRQANSALYHIVM
VRLRYNQETRDYVARRTAEGKTKMEIIRCLKRYLVRQLYPLIVETLHPRKEVAAA
Blast result :
Comments
ISBli6 is 65% aa similar to ISEc21.
References
1] Sebastien Levesque (2017) Direct submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.