ISMtsp22

  • Family IS1595
  • Group ISNha5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LMRM01000009 ND Methylobacterium sp.
Methylobacterium sp. Leaf94
DNA section
IS Length : 5979 bp

Ends


IR Length : 36

IRL : CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGGTCGTTGGATAGCT
IRR : CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGAGCAATTTTATTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTGTCGCGCTTCGACTACCCGGCGGCCAA8

DNA sequence

CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGGTCGTTGGATAGCTAAGGCGCGTGGTGGCGACGGGCCTGGGTGTTGATTTTTTTCCGAGAAATG
CTAGTTCTGTTGAAAGACGCGTTTTTCAACGGTGGTGAGATGGCCGAGGCCGAGAACCCTGCTCAATCATTGATTGATGAAGAATTTCCGATAGGGCTCC
GGCCACTCGTTGCGCCTGCGCTGAAGCGCGCTTATCAAGCCGCCGACTCGCTGATCCTTCGTACCGAGTTTCTGGACAATCCGAGCGGGCGCTACCAGCG
GGGCGACCTGATCTGCAAGGCGGCTGAGCACGAGTTTCGGCGGCTTATAGAGGCTGGAAGCCTGCCCTTTGAGCCGTCGTGGGATGACTACGCCTCACCG
ACGGGCAAGCATCTCGTGATGCGAGGGAAGCGCTCTCGCATCACCATCAATCAGGTCGATAAGCCGAACACCAAGCCCCGGCGAGCTGCCTTTCGGGTCA
ATTTCGGCGAGTCGAACATGGCCGATCTGTTTCCGGAGCAAAATCGAGCGATCCGAGAAGAAAACGAAAAGAAACATATCGTACTTTTACATGGACATCG
AAATCTGACGTTCGCCACGCTGGGCCTTCCTCATCCCACTCGGGCTAAGTTGATATGGCGAACACCGAACCTTCTGCCCAAGGTTTTTGAGGTGGCTGAC
ATACCTCCAGGCACCACTTCACCGGTGCCGCCTGAGGAGGGGCCGACTCAATCACCTGATCCCGAAGCCCTGGAAAACCTCCTGAGATTGATCCGCGATA
ACAGTTAATGCGCAACGTCGTCCGCTTCCCCGACCGAACTAACGGTTTCGTTCCGCAGCGCCTCACCGAAGCTCGGGTTGCGCTACAGGTCGCGCGCGCC
GACTTGGCGCGACAGTTGGGTATAACTGGACAGGCGGTCGCCTATTATGAGGCGGGCGACCGGCGTCCCGACATGGACGTCTTGCTCAAGATCTCTAGCA
TCTTGAACCAACCTGTTTCGTTCTTTCTGAAGCCTACAAAGCCTATCGAAGGCGTGCGTGGTGCTCGTTACTTTAGAAGTGTTGGACCAAAGACCAACAA
AATAAACCATGCTTTAGAAGCTAAGACAAAGTGGCTTTGGGAGTTTCTGCAATTTCTCTTGAGACACATCAAGCTTCCGACTCCGAACATTCCTCTGATA
GAGGATGAGCTTCAAAGCGACATGTATGATTTAGACGCTATTGAGGCTATTGCTACTAGCGTTCGTCGCCATTGGAAGTTGGGTGATGGCCCGATAGCAA
ATATGATTGCCCTACTGGAAACTAACGGCGTTATTGTCTCGCGTTTTTCCATGGGCTCAGACAAAATTGATGCTTTCTCATGCTGGATCGAAGGCCGACC
ATATATTCTGCTTGGGTCGGATAAGTCGTCTTGCGCTCGGTCTCGTTTCGACGCAGCCCATGAGCTTGGCCATCTTGTGTTGCACAAGCACATATCTCAA
GATGACATCGAAGACAAAACAATCCGAGATCGCATAGAAAAAGAGGCCAATTGGTTCGCGGGGTCCTTTCTATTGCCTCGCGGGTCCATTTTGGCGGAAT
TCTATTCTACAAGATCGTCTCATCTAATTGGTCTGAAGAAGCGCTGGCGGGTGTCTATGCAGGCGATTGCTCATCGCTGCAAGGATATCGGCGCGCTAGA
CGAAGGGCAGTATATCGCTTTTCGTAAAGTCTTGGCTGTGAAGGGCTGGCTTAAGACCGAGCCTTTAGACGGCGAGCTGCCGCTAGAGATGCCAGGGCTT
CTTATCAAGGCTTGGGCTATGCTTGTGTCTAAGGGACTGATCCACGAAGAGGGCGCAGAGGAGTCTATAGGCTTCTCGCTAGATATGGTGCAGAGCCTCT
GCGGCTACATTCCAGATCGTAATCTTGAGCAGTCTATTCCGCAGATCTCGCTGCTGAATAATAAGGGCTAGACTGTCAATATTTTGAGCAAAGGTACATG
AAGAAGTTGCGGGCTTGCTCTCTGGCGTAGGTTCGAGCCGGGAGAGAAAGCAGTCGGGCCGACAATCCCCCTAGGAAGGGAATGCCGGCCCGGCCAGGAC
CACACAGCGCTAAGTCGATCCGACTTGGAAGAACCCCGCGATGCAAGGCGTCACAGCTTTAGAGTCGCATCTTCGGGGCTATCTTTCAAGCCGGACGGCA
TCCCTCAAACCGATTTCGGTAAAGGATACGTCATGCCCGCAGAGTTCCCCTGTGACCACGTCACGGCTTGCCACATCTTGCACGCCGTCCTTGTGAACCG
TTGGAGCCAGCAGAAGGCTTCTCACTACTTCTGTGTGAACGGCGGCACGGTCTCTAAGATCGTGCGCGGCCTCTCGCACTTCGGAGCCTCCCCGCTCCCG
TTCTAAGCAGTCGCGCCGGGGTTACCCTCCACGGTGATCCCGGCCGGTTCGTCCGAGAACGTCACGCCAGCCTCTTCAAACGCTCGCCGCATCGCCAGCA
GGTTGTTGGCGATCGGCTTTCGCAAGCCATTCTCAAACTGACGGATCGTGCTCAGACCGATGTTGGCGCGGGCAGACAGGTCTTGCTGCGACCAGTTCAA
CCACGCTCGGGCGGCACGGCATTGCTCAGGGCTCATTGCCATTGAGAGCTAAGGCAGGCGTCTTTTTGCGTCAAGGGCAATTCAAAGCGTTGACATAGCT
CTTTTCAACCCATAGAACTCACCTCAACGCAAAACGTTGAGGTTGACCCGTGGCCCAGCACTTTCTTCTCTCAAAAGCGGCCCGCACCCTCAACCTCTCC
AAGGTCGCCCGCATGTCGGACGATGAGGCGTGGTCCACCTTTAAGGCGATCCGCTGGGAGGCTACCGAGGGCGCCCCGTTCTGCCCCCGCTGTGGCTGCC
TCAAGCACTCGTTCATCGCCACCCGTAAGCTCTTCAAGTGCGCCGGCTGCCGTCACCAGTACAGCGTCACCAGCGGCACCATCTTCGCTTCGCGCAAGCT
CCCGATCCGAGACCACCTTCTCGCCATCGCGATCTTCGCCAACGGCGCAAAGGGCCACTCTGCCCTCCAACTCTCCCGCGACCTCGACTGCCAGTACCGC
ACGGCCTTCGTGATGGCTCACAAGCTCCGCGAGGCTGTCGCCGCCGAGTCGGCTGATACGACCCTTGAGGGCAACGTTGAGGTGGATGGCGCCTACTTCG
GTGGCCACGTTCGTCCCGAGAACATGAAGGCGGATCGGCGCGACCGTCGCCTTGCCGAGAACCAGACCGGCAAGCGCCGCGTCGTCGTCGTGATCCGTGA
GACCAAGGGCAAGGCTCTCACCTTCGCCTTCCGTTCTGAGGCCGAGTCCGTGCCGACCATCGTTGAGCGCGTCGCCCCCGGCAGCGTTGTTCACGCCGAT
GAGGCTAAGGGCTGGGATCGTCTCCACGCCTCGTTCAAGACTCACCGCATCAATCACCAGCAGGCGTACAGCGCTGACGGCGCCTGCACCAACCAAGCCG
AGTCGTTCTTCTCCCGCCTTCGCCGCGCCGAGATGGGCGTGCATCACCACGTCGCCGGCCCCTACCTCGCCGCCTACGCTGGCGAGATGGCTTGGCGTGA
GAACCATCGCCGCGTCAGCAACGGTGAGCAGTATGCCCTCATCACGGGCGCCGCGCTCACGCACGCCCCGTCGAAAGTCTGGAAGGGCTACTGGCAGCGT
CACACGGCGAAGGTGGCCTGAGATGGCCCTGCCTCAGATCGTCAACACCCTCACTGCCAAGCGGGATGAGATCGAAGCGCATATCATGGTGCTGCGTGAC
CAGCTTCGGGCGGCAGAGAGCGATCTGTCGGCGGTGACGGCTGTTCTCTCACTCTACGAGCTATCGCCCACCACTCAGACGCGCTTCCCAGCCTACGCGC
ACCTTAACAGGTTGTTCGCCTATGGAGAGATGTTTGGACTGTGTAAGCGAGCCATTGCGGAAGCTGGTAGACCGCTGACGACACGTGAGATTGCTCTGGC
CGTCATACGCGCGAAGGGGTGGGACGATAAGGACGCAATGCTACGCAAGGCGGTTGCATATAGGCTAATTCAAAGCCTCAGCCAAGCCGCTGTTCAAGGG
CGGATTAGGGATGCTGGAAAACGAGCTAACGTGCGAGTGTGGAAATTAGCGGATACAGATGAAATCTAAGTAGATTTTTTTTGAACATTTTCCTGTAGCT
GCTTTACAAGATCAGAGCGAAGATCAAGCACCTTCCCAAGGTTTTCCGCCCACTGTCCGATATCTTTTGCGTCAACAAATGTCTGCACATCCTTATTAAA
TTTTACCACTTCATTTTGATAACTTGAAATCAGAGCATTTTCTTCTTTCCCAAATAGACGCTTGATACTCTCTGCATCTTGGATCTGAGACAGCAGTACA
GTCTTAAATTTTTCTTTGGCCTTTGTGAGGTCTTGCGACTTATTTACGGCGATTATGAATGTGTTCAGAGCATCTACGATTTCTGAACTGTTGGCATCAA
ACTTCTGAACCTTGTCAATCTTGATCTGATTGACCTGGGTAACGGATTGGTACTCGTAGGAAAGACGTGCGCTATAGACGCTTACGCCAGCAGAAATTAG
GCTCGTAATTACAGCGGCCGTAAGAGCATGACTCAAGAACCCACTTGATTTAGGCGCTTGGACCTCAGTGGGTCTCTCGGAGACTGATGGCTCAGTCGGC
ATCGTCAAACTCTAATTCCCATTTCGTGGGCGCGCACTGGGCAATATTCCACGCCCGCCCGTTGACCGAGCAGCATCGCATATTGCCATGGTTTTGTCCA
TCGGAACCATGTCGTAAATTCTTTTCACCGCTTCTGAAACTCGTGAAGTGCAACGAGGGTCTGCGTTTGGCGATGAATTCATAATCACCATCTTCTTGAT
TTCTTGCTGCATCTGCTCAGCGCCATGGACTTGAGATAATTGGATATAAGAGCTTGCTAGGGCAACGATTACAAAGGAAACAATACTTTGGCTTATGTAT
CTCGTAAACCCTTCTGAGTGAATATCCGACTCTTGTAGGCAGGTATATTGTAGCGGAGGCTCGCGTAATAGTATGTCTACAATATCGTTTGGGTTAAGAC
CGGCCTCGCCCAAATCTAAAGAAATGCATGCCGCTGCCGCTAGGCGTGATAAATTGCTGAGGAATGCGGCGTCAGAGTCTCTGAAGCTATCTTGATTATA
AACCGTTGATACGTAGTTATCACCCGAAACAAATGAGCCGAACGCTAGGGCGCAAACCTCAAGCTTCAGAGATTTCTCCAGTAGCGTAAATGCGTGCTGA
TTTCTCAGGCTCTCCGATAACTTTGTAGAGATCGTATTTTCTCGAAAAGACCCTATCCACTCTACTGATCTGGCTGGAATAAAAGTATTCCCATACTTCT
CAGGTGCGAAACCCTTGACCCTGCGCCGGTTGCCGATCTGGCCAATCAGTATCTTCCCCATTCTGACGGGGCTTGGCAAAACAACAATATCATAATGTTT
AGCTGTATTAAAAAAGTTTATTATTGACATTCTAGCACGCCCGCGACCTTGCGCAGTCGCGTCGGCAAAATCCTCTAAATTAATTTCGTATTCTTCGTCG
GGGCCATACTCGGATATAAAGTTCTTTATACCTTGAGAATGAGCAATTCTTGGTCCCCAGTCATCTACATCTGAAAGATCGCCGTCGGGCAGAACCAATC
CTGGGGTATCAAGGAACGCTATGCCTTGTTCTTCAAAATTATCTAGAAACTGATACCCTTCTCCAGGGAACAATCTCCATACTTTTTGAGTGTCTGGGAT
CGTTGGTGCGTTCAAGTCGATTTGGATCATTTTATCGCCAATCTTTCCTTGCTTTGTATCAAGCGTAGGAAAGAACTGAGTCAAGGCGTGTTCAAACCAT
GATACGCGCATAGCACCAGTAAGGCTGGATCAATAAAATTGCTCTCAACGCTTTTGGGTGAGGTTGCTGCATAATACCG
Protein section
ORF number : 3

 

ORF 2
LengthBeginEndStrandFusion ORF
287 bp71 aa26892403-No
ORF function : Passenger Gene
Annotation : XRE family transcriptional regulatorDescription : Transcriptional Regulator factor

ORF sequence :

MSPEQCRAARAWLNWSQQDLSARANIGLSTIRQFENGLRKPIANNLLAMRRAFEEAGVTFSDEPAGITVEGNPGATA

 

Blast result :
ORF 1
LengthBeginEndStrandFusion ORF
315 bp104 aa16571971+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MQAIAHRCKDIGALDEGQYIAFRKVLAVKGWLKTEPLDGELPLEMPGLLIKAWAMLVSKGLIHEEGAEESIGFSLDMVQSLCGYIPDRNLEQSIPQISLL
NNKG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
972 bp323 aa27503721+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQHFLLSKAARTLNLSKVARMSDDEAWSTFKAIRWEATEGAPFCPRCGCLKHSFIATRKLFKCAGCRHQYSVTSGTIFASRKLPIRDHLLAIAIFANGA
KGHSALQLSRDLDCQYRTAFVMAHKLREAVAAESADTTLEGNVEVDGAYFGGHVRPENMKADRRDRRLAENQTGKRRVVVVIRETKGKALTFAFRSEAES
VPTIVERVAPGSVVHADEAKGWDRLHASFKTHRINHQQAYSADGACTNQAESFFSRLRRAEMGVHHHVAGPYLAAYAGEMAWRENHRRVSNGEQYALITG
AALTHAPSKVWKGYWQRHTAKVA

 

Blast result :
Comments
ISMtsp22 is 80% (transposase) aa similar to ISNwi4.
References
1] ISfinder annotation (2017)
2] Bai,Y., Muller,D.B., Srinivas,G., Garrido-Oter,R., Potthoff,E., Rott,M., Dombrowski,N., Munch,P.C., Spaepen,S., Remus-Emsermann,M., Huttel,B., McHardy,A.C., Vorholt,J.A. and Schulze-Lefert,P. (2015) Nature 528 (7582), 364-369.