ISBp1
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF287634 | ND | Burkholderia pseudomallei | Burkholderia pseudomallei |
DNA section
IS Length : 1214 bp
Ends
IR Length : 7/9
IRL : TGGAATTTTCGGACCAGTTGAAACTTGAGAGAATGGCTTCCAACGGAGAA
IRR : TGGGTTTTTGACCCGCTGACCTGCCTGATTTCTTCGGGCCATTTCAATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGGAATTTTCGGACCAGTTGAAACTTGAGAGAATGGCTTCCAACGGAGAAAAGGAAGTCATGAAGAAGAGCCGGTTTACCGAAGAACAGATGGTCACCAT
CCTGCGCGAGGCGGACAAGGCGCCGGTCGCGGAAGTTGCGAAGAAGCACGGGGTCAGCGAGCAAACCATTTACAACTGGCGACAACATTTCGGCGGGCTG
GAGGCTGCCGACGTGAAGCGGCTCAAGCAGCTCGAGCAAGAGAATGCGCGGCTGAAGAAGATGCTGGCCGAGCGCGATCTCGAGCTGGACGTGATGAAAG
AGATCAACGCAAAAAAGTGGTGAGCGCGCCCGCCCGACGCCAGCAGGTCACCTATGCGAAAGCACGGGGCCTGTCGGAGCGACGTGCGTGCGCGCTGATG
TCGGTCGCCCGATCGGCGCTGCATTACGAATCAACGCTGGCCGTGCGGGACGCGCCGGTGCTGGCAGCGATGAGCATTCTGTCGGCGCAATATCCGCGTT
ATGGTTACCGCCGCATCCAGATCTTTCTGGAGCGGCAAGGTCACCCGATGAATGACGACCGGGCTTGGCGGCTGTGGCGTCTTGCCGGGTTGCAGGTGCC
GCGCAAGCGACCCCGTCGACGCGTGTCGGTCCAACGCCCTCGGCCGCAGCCGGCGACGGCGGCACGACACGTTTGGGCGTACGACTTCGTATTCGACGCG
TGCGCCAACGGCCAGCAGTTGAAGTGTCTGACGGTGATCGATGAGTACACGCGTGAATGCCTGGCAATCGACGTGGCCGGATCGATTCGTTCCGGACGTG
TCATCGAAGTCCTGTCCCAACTGGTCAGCCTTCATGGTGCACCTCGTTACTTGCGTTCGGACAACGGCCCAGAGTTCGTATCGCGGGCCACCCTGAAGTG
GGCTGCACAGAACGGCATGGACATGGCGCTTAGCGATCCCGGCAAGCCTTGGCAGAACGGCGCGGACGAGAGCTTCAACGGCAAGTTCCGAGATGAATGC
TTGAGCCTTGAATGGTTTCGAACGCGCACGGAAGCGAAGGTTGTGATCGAGCAGTGGCGGCGTCACTACAATGCCATCCGACCGCATTCGAGTCTGGCCT
ATCTGACGCCCGACGAGTTCAAGCAGCGGTATTGTTCAACTGAAGCAACCGAGGCCGTTCTCCAAGATTGAAATGGCCCGAAGAAATCAGGCAGGTCAGC
GGGTCAAAAACCCA
CCTGCGCGAGGCGGACAAGGCGCCGGTCGCGGAAGTTGCGAAGAAGCACGGGGTCAGCGAGCAAACCATTTACAACTGGCGACAACATTTCGGCGGGCTG
GAGGCTGCCGACGTGAAGCGGCTCAAGCAGCTCGAGCAAGAGAATGCGCGGCTGAAGAAGATGCTGGCCGAGCGCGATCTCGAGCTGGACGTGATGAAAG
AGATCAACGCAAAAAAGTGGTGAGCGCGCCCGCCCGACGCCAGCAGGTCACCTATGCGAAAGCACGGGGCCTGTCGGAGCGACGTGCGTGCGCGCTGATG
TCGGTCGCCCGATCGGCGCTGCATTACGAATCAACGCTGGCCGTGCGGGACGCGCCGGTGCTGGCAGCGATGAGCATTCTGTCGGCGCAATATCCGCGTT
ATGGTTACCGCCGCATCCAGATCTTTCTGGAGCGGCAAGGTCACCCGATGAATGACGACCGGGCTTGGCGGCTGTGGCGTCTTGCCGGGTTGCAGGTGCC
GCGCAAGCGACCCCGTCGACGCGTGTCGGTCCAACGCCCTCGGCCGCAGCCGGCGACGGCGGCACGACACGTTTGGGCGTACGACTTCGTATTCGACGCG
TGCGCCAACGGCCAGCAGTTGAAGTGTCTGACGGTGATCGATGAGTACACGCGTGAATGCCTGGCAATCGACGTGGCCGGATCGATTCGTTCCGGACGTG
TCATCGAAGTCCTGTCCCAACTGGTCAGCCTTCATGGTGCACCTCGTTACTTGCGTTCGGACAACGGCCCAGAGTTCGTATCGCGGGCCACCCTGAAGTG
GGCTGCACAGAACGGCATGGACATGGCGCTTAGCGATCCCGGCAAGCCTTGGCAGAACGGCGCGGACGAGAGCTTCAACGGCAAGTTCCGAGATGAATGC
TTGAGCCTTGAATGGTTTCGAACGCGCACGGAAGCGAAGGTTGTGATCGAGCAGTGGCGGCGTCACTACAATGCCATCCGACCGCATTCGAGTCTGGCCT
ATCTGACGCCCGACGAGTTCAAGCAGCGGTATTGTTCAACTGAAGCAACCGAGGCCGTTCTCCAAGATTGAAATGGCCCGAAGAAATCAGGCAGGTCAGC
GGGTCAAAAACCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
264 bp | 87 aa | 60 | 323 | + | No |
Description : First part of the transposase
ORF sequence :
MKKSRFTEEQMVTILREADKAPVAEVAKKHGVSEQTIYNWRQHFGGLEAADVKRLKQLEQENARLKKMLAERDLELDVMKEINAKKW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1143 bp | 380 aa | 29 | 1171 | + | No |
Description : Second part of the transposase
ORF sequence :
ENGFQRRKGSHEEEPVYRRTDGHHPARGGQGAGRGSCEEARGQRANHLQLATTFRRAGGCRREAAQAARARECAAEEDAGRARSRAGRDERDQRKKVVSA
PARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMNDDRAWRLWRLAGLQVPRKRPRRRVS
VQRPRPQPATAARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMA
LSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEAKVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
PARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMNDDRAWRLWRLAGLQVPRKRPRRRVS
VQRPRPQPATAARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMA
LSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEAKVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1111 bp | 370 aa | 60 | 1170 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKSRFTEEQMVTILREADKAPVAEVAKKHGVSEQTIYNWRQHFGGLEAADVKRLKQLEQENARLKKMLAERDLELDVMKEINAKKVVSAPARRQQVTYA
KARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMNDDRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPAT
AARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQN
GADESFNGKFRDECLSLEWFRTRTEAKVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
KARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMNDDRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPAT
AARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQN
GADESFNGKFRDECLSLEWFRTRTEAKVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
Blast result :
Comments
ISBp1 is 76% (ORF1) aa similar to ISD1 (ORF1)and 59% (ORF2) to ISRso14 (ORF2).
References
1] Yuen,K.Y., Woo,P.C.Y. and Leung,P.K.L (2000) Direct submission GenBank