ISBma1
- Family ISL3
- Group
Isoform Synonym(s) ISBm1, ISBp2
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF285635 | ND | Burkholderia mallei | Burkholderia mallei Burkholderia pseudomallei CIP565891 |
DNA section
IS Length : 1305 bp
Ends
IR Length : 19/23
IRL : GGTTCATCGCAGAAAACCGTGGAGACTTGGAGAACGATTGCGTAACCTGA
IRR : GGTTCATCGCGGAATCCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCATCGCAGAAAACCGTGGAGACTTGGAGAACGATTGCGTAACCTGACGCCTGATTTTATGGATGTCAGGAGGCGGAATTGCTCGATCGCAAGGCAC
TTCAGGCACTAGGTTGCTGGACAGGCTATCGGCTGGAGCGGGTGGAGTGGCCGCAGGGCGATAGCCGCACGCTGTCGCTCTACCTGAAGCCGGTCAGTCA
GATCATGTACTGCGAGCAATGCGGTGCGCGTTGCCAGCAGATTCATGAAACGACCGTACGGCGGGTACGTGATCTGCCGTTGTTCGAGTACCGGGTGGTG
CTGCACGTGCCTCGACGCCGAGTCTGGTGCGAACGCTGCGGCGCAGCGCGGCTGGAGAAGCTGGACTGGCTGGGCCGCTACCAGCGGGTGACGCAGCGGT
TTGCCAAGGCCTGCGAGAAGTTGCTGCAGGCCGCCAGCGTACAGGCCGTGGCGGCCTTCTACGAACTGGGCTGGCACACGGTCAAATCGATCGACAAGAT
GCGCTTGCGCGCGCGCGTGGCCGAACCGGACTGGTCGACGATCCGTTATCTGGCGATGGACGAGTTCGCGCTCCATAAAGGCCATCGCTACGCCACGGTG
GTGGTTGATCCGATCGGCCGACAGGTCCTCTGGGTTGGGCCCGGACGGTCACGCGAGACGGCGCGCGCCTTCTTCGAACAACTCCCCGAAGGCGTGGCCG
AGCGCATCGAAGCGGTCGCAATCGACATGACCACGGCCTATGAGCTGGAGATCAAGGAACAGTGCCCACAGGCGGAAATCGTCTTTGACCTGTACCACGT
CGTGGCCAAGTACGGTCGCGAGGTGATCGATCGGGTACGGGTGGATCAGGCCAACCAACTGCGACATGACAAGCCGGCCCGTAAGGTTCTGAAGTCCAGT
CGCTGGTTGCTGCTGCGCAACCGTCATAACCTGAAGCCAGAACAGGCCGTGCATCTGAAGGAACTGCTGGCGGCCAATCAGTCGCTGTTATGCGTCTATG
TGCTGCGCGACGAGCTCAAACGGCTCTGGTTCTACCGCAAGCCGGCCTGCGCGGAAAAGGCTTGGGGGCAATGGTTCGAACAGGCTCAGCAAAGCGGGAT
CGCCGCCTTGCAAAAGTTCGCCCAGCGCTTGCAGGGTTACTGGCACGGAATCGTGGCCCGCTGCCGCCATCCGCTCAATACCAGCGTCGTCGAAGGCATC
AACAACACGATCAAGGTCATCAAGCGCCGAGCTTACGGGTACCGCGACGAGCAATACTTCTTCCTCAAGATCCGCGCCGCGTTCCCCGGGATTCCGCGAT
GAACC
TTCAGGCACTAGGTTGCTGGACAGGCTATCGGCTGGAGCGGGTGGAGTGGCCGCAGGGCGATAGCCGCACGCTGTCGCTCTACCTGAAGCCGGTCAGTCA
GATCATGTACTGCGAGCAATGCGGTGCGCGTTGCCAGCAGATTCATGAAACGACCGTACGGCGGGTACGTGATCTGCCGTTGTTCGAGTACCGGGTGGTG
CTGCACGTGCCTCGACGCCGAGTCTGGTGCGAACGCTGCGGCGCAGCGCGGCTGGAGAAGCTGGACTGGCTGGGCCGCTACCAGCGGGTGACGCAGCGGT
TTGCCAAGGCCTGCGAGAAGTTGCTGCAGGCCGCCAGCGTACAGGCCGTGGCGGCCTTCTACGAACTGGGCTGGCACACGGTCAAATCGATCGACAAGAT
GCGCTTGCGCGCGCGCGTGGCCGAACCGGACTGGTCGACGATCCGTTATCTGGCGATGGACGAGTTCGCGCTCCATAAAGGCCATCGCTACGCCACGGTG
GTGGTTGATCCGATCGGCCGACAGGTCCTCTGGGTTGGGCCCGGACGGTCACGCGAGACGGCGCGCGCCTTCTTCGAACAACTCCCCGAAGGCGTGGCCG
AGCGCATCGAAGCGGTCGCAATCGACATGACCACGGCCTATGAGCTGGAGATCAAGGAACAGTGCCCACAGGCGGAAATCGTCTTTGACCTGTACCACGT
CGTGGCCAAGTACGGTCGCGAGGTGATCGATCGGGTACGGGTGGATCAGGCCAACCAACTGCGACATGACAAGCCGGCCCGTAAGGTTCTGAAGTCCAGT
CGCTGGTTGCTGCTGCGCAACCGTCATAACCTGAAGCCAGAACAGGCCGTGCATCTGAAGGAACTGCTGGCGGCCAATCAGTCGCTGTTATGCGTCTATG
TGCTGCGCGACGAGCTCAAACGGCTCTGGTTCTACCGCAAGCCGGCCTGCGCGGAAAAGGCTTGGGGGCAATGGTTCGAACAGGCTCAGCAAAGCGGGAT
CGCCGCCTTGCAAAAGTTCGCCCAGCGCTTGCAGGGTTACTGGCACGGAATCGTGGCCCGCTGCCGCCATCCGCTCAATACCAGCGTCGTCGAAGGCATC
AACAACACGATCAAGGTCATCAAGCGCCGAGCTTACGGGTACCGCGACGAGCAATACTTCTTCCTCAAGATCCGCGCCGCGTTCCCCGGGATTCCGCGAT
GAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1161 bp | 386 aa | 142 | 1302 | + | No |
Chemistry : Unknow
ORF sequence :
MEWPQGDSRTLSLYLKPVSQIMYCEQCGARCQQIHETTVRRVRDLPLFEYRVVLHVPRRRVWCERCGAARLEKLDWLGRYQRVTQRFAKACEKLLQAASV
QAVAAFYELGWHTVKSIDKMRLRARVAEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWVGPGRSRETARAFFEQLPEGVAERIEAVAIDMTTAY
ELEIKEQCPQAEIVFDLYHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRNRHNLKPEQAVHLKELLAANQSLLCVYVLRDELKRLWFYRK
PACAEKAWGQWFEQAQQSGIAALQKFAQRLQGYWHGIVARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEQYFFLKIRAAFPGIPR
QAVAAFYELGWHTVKSIDKMRLRARVAEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWVGPGRSRETARAFFEQLPEGVAERIEAVAIDMTTAY
ELEIKEQCPQAEIVFDLYHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRNRHNLKPEQAVHLKELLAANQSLLCVYVLRDELKRLWFYRK
PACAEKAWGQWFEQAQQSGIAALQKFAQRLQGYWHGIVARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEQYFFLKIRAAFPGIPR
Blast result :
Comments
ISBma1 is 85% aa similar to IS1001.
References
1] DeShazer,D.(2000) Direct submission GenBank.