ISBma1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISBm1, ISBp2
Accession numberTranspositionOriginHost
AF285635 ND Burkholderia mallei
Burkholderia mallei
Burkholderia pseudomallei CIP565891
DNA section
IS Length : 1305 bp

Ends


IR Length : 19/23

IRL : GGTTCATCGCAGAAAACCGTGGAGACTTGGAGAACGATTGCGTAACCTGA
IRR : GGTTCATCGCGGAATCCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCATCGCAGAAAACCGTGGAGACTTGGAGAACGATTGCGTAACCTGACGCCTGATTTTATGGATGTCAGGAGGCGGAATTGCTCGATCGCAAGGCAC
TTCAGGCACTAGGTTGCTGGACAGGCTATCGGCTGGAGCGGGTGGAGTGGCCGCAGGGCGATAGCCGCACGCTGTCGCTCTACCTGAAGCCGGTCAGTCA
GATCATGTACTGCGAGCAATGCGGTGCGCGTTGCCAGCAGATTCATGAAACGACCGTACGGCGGGTACGTGATCTGCCGTTGTTCGAGTACCGGGTGGTG
CTGCACGTGCCTCGACGCCGAGTCTGGTGCGAACGCTGCGGCGCAGCGCGGCTGGAGAAGCTGGACTGGCTGGGCCGCTACCAGCGGGTGACGCAGCGGT
TTGCCAAGGCCTGCGAGAAGTTGCTGCAGGCCGCCAGCGTACAGGCCGTGGCGGCCTTCTACGAACTGGGCTGGCACACGGTCAAATCGATCGACAAGAT
GCGCTTGCGCGCGCGCGTGGCCGAACCGGACTGGTCGACGATCCGTTATCTGGCGATGGACGAGTTCGCGCTCCATAAAGGCCATCGCTACGCCACGGTG
GTGGTTGATCCGATCGGCCGACAGGTCCTCTGGGTTGGGCCCGGACGGTCACGCGAGACGGCGCGCGCCTTCTTCGAACAACTCCCCGAAGGCGTGGCCG
AGCGCATCGAAGCGGTCGCAATCGACATGACCACGGCCTATGAGCTGGAGATCAAGGAACAGTGCCCACAGGCGGAAATCGTCTTTGACCTGTACCACGT
CGTGGCCAAGTACGGTCGCGAGGTGATCGATCGGGTACGGGTGGATCAGGCCAACCAACTGCGACATGACAAGCCGGCCCGTAAGGTTCTGAAGTCCAGT
CGCTGGTTGCTGCTGCGCAACCGTCATAACCTGAAGCCAGAACAGGCCGTGCATCTGAAGGAACTGCTGGCGGCCAATCAGTCGCTGTTATGCGTCTATG
TGCTGCGCGACGAGCTCAAACGGCTCTGGTTCTACCGCAAGCCGGCCTGCGCGGAAAAGGCTTGGGGGCAATGGTTCGAACAGGCTCAGCAAAGCGGGAT
CGCCGCCTTGCAAAAGTTCGCCCAGCGCTTGCAGGGTTACTGGCACGGAATCGTGGCCCGCTGCCGCCATCCGCTCAATACCAGCGTCGTCGAAGGCATC
AACAACACGATCAAGGTCATCAAGCGCCGAGCTTACGGGTACCGCGACGAGCAATACTTCTTCCTCAAGATCCGCGCCGCGTTCCCCGGGATTCCGCGAT
GAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa1421302+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEWPQGDSRTLSLYLKPVSQIMYCEQCGARCQQIHETTVRRVRDLPLFEYRVVLHVPRRRVWCERCGAARLEKLDWLGRYQRVTQRFAKACEKLLQAASV
QAVAAFYELGWHTVKSIDKMRLRARVAEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWVGPGRSRETARAFFEQLPEGVAERIEAVAIDMTTAY
ELEIKEQCPQAEIVFDLYHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRNRHNLKPEQAVHLKELLAANQSLLCVYVLRDELKRLWFYRK
PACAEKAWGQWFEQAQQSGIAALQKFAQRLQGYWHGIVARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEQYFFLKIRAAFPGIPR

 

Blast result :
Comments
ISBma1 is 85% aa similar to IS1001.
References
1] DeShazer,D.(2000) Direct submission GenBank.