ISBth20
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003766 | ND | Bacillus thuringiensis | Bacillus thuringiensis HD-789 pBTHD789-3 |
DNA section
IS Length : 808 bp
Ends
IR Length : 16/18
IRL : GGTTCTGTTGCAAAGTTTTTGGAGTGAAGTTAAAATATAGAGAAAATGGG
IRR : GGTGTGTTGCAAAGTTTGAAAAAACACAGACTTGTTTACAAAATATAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAGTATTTTG | TCAAAAAGCTA | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTTTGGAGTGAAGTTAAAATATAGAGAAAATGGGGCGAGGAGAAGGATGCATGGGATATTTTAAAGGGAAACAATTCAAAAAAG
ATATTATTTTGGTAGCCGTTGGCTATTACTGTCGTTTTTCTTTAAGTTATCGTGATGTGTCTGAGATCCTAAAAGAACAAGGAGTTTCTGTACATCCCAC
AACCATCATGCGTTGGGTTCATGAATATGGCAATTTGATTTATCAAATATGGAAGAAGAAAAACCAGTCTGCACATCATGTTTGGCATGTAGATGAGACG
TACATCAAAGTGAAAGGGGAGTGGTCTTATCTGTATCGTGCGATTGATAGTAATGGATATACACTTGATTTTCAACTTCGAAAAACACGAGATCATCAAG
CAGCATATGCCTTTATAAAAAGGTTGACGAAACAATTTGGAGAACCAACGGTTCTTACAACAGATCAAGCTCCTGCACTGCTTTGTGCGTTCAAAAAACT
GAAAAATAATGGCTTTTATGTGCATATAACACATTGTACGGTTAAGCACCTTAATAACCTGATTGAACAAGATCATCGACATGTCAAACGACGTTTTGCC
AAATCTTCTGGATTCCAAAATATCCGTCATGCTTCACGTACATTGAAAGGAATCGAAACGATTCATGCGATATACAAACAAAAGAGAAGTCAAATTCCAG
ACTTCTCTTTTTCGACGTACAAGGAATTACAGGAGTTATTCAGAACCGCTTAAACTATAACTATATTTTGTAAACAAGTCTGTGTTTTTTCAAACTTTGC
AACACACC
ATATTATTTTGGTAGCCGTTGGCTATTACTGTCGTTTTTCTTTAAGTTATCGTGATGTGTCTGAGATCCTAAAAGAACAAGGAGTTTCTGTACATCCCAC
AACCATCATGCGTTGGGTTCATGAATATGGCAATTTGATTTATCAAATATGGAAGAAGAAAAACCAGTCTGCACATCATGTTTGGCATGTAGATGAGACG
TACATCAAAGTGAAAGGGGAGTGGTCTTATCTGTATCGTGCGATTGATAGTAATGGATATACACTTGATTTTCAACTTCGAAAAACACGAGATCATCAAG
CAGCATATGCCTTTATAAAAAGGTTGACGAAACAATTTGGAGAACCAACGGTTCTTACAACAGATCAAGCTCCTGCACTGCTTTGTGCGTTCAAAAAACT
GAAAAATAATGGCTTTTATGTGCATATAACACATTGTACGGTTAAGCACCTTAATAACCTGATTGAACAAGATCATCGACATGTCAAACGACGTTTTGCC
AAATCTTCTGGATTCCAAAATATCCGTCATGCTTCACGTACATTGAAAGGAATCGAAACGATTCATGCGATATACAAACAAAAGAGAAGTCAAATTCCAG
ACTTCTCTTTTTCGACGTACAAGGAATTACAGGAGTTATTCAGAACCGCTTAAACTATAACTATATTTTGTAAACAAGTCTGTGTTTTTTCAAACTTTGC
AACACACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
687 bp | 228 aa | 67 | 753 | + | No |
Chemistry : DDE
ORF sequence :
MGYFKGKQFKKDIILVAVGYYCRFSLSYRDVSEILKEQGVSVHPTTIMRWVHEYGNLIYQIWKKKNQSAHHVWHVDETYIKVKGEWSYLYRAIDSNGYTL
DFQLRKTRDHQAAYAFIKRLTKQFGEPTVLTTDQAPALLCAFKKLKNNGFYVHITHCTVKHLNNLIEQDHRHVKRRFAKSSGFQNIRHASRTLKGIETIH
AIYKQKRSQIPDFSFSTYKELQELFRTA
DFQLRKTRDHQAAYAFIKRLTKQFGEPTVLTTDQAPALLCAFKKLKNNGFYVHITHCTVKHLNNLIEQDHRHVKRRFAKSSGFQNIRHASRTLKGIETIH
AIYKQKRSQIPDFSFSTYKELQELFRTA
Blast result :
Comments
ISBth20 is 82% aa similar to IS240F.
References
1] ISfinder annotation (2017)
2] Doggett,N.A., Stubben,C.J., Chertkov,O., Bruce,D.C., Detter,J.C., Johnson,S.L. and Han,C.S. (2013)Genome Announc 1 (6), e01023-13.
2] Doggett,N.A., Stubben,C.J., Chertkov,O., Bruce,D.C., Detter,J.C., Johnson,S.L. and Han,C.S. (2013)Genome Announc 1 (6), e01023-13.