ISBth20

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003766 ND Bacillus thuringiensis
Bacillus thuringiensis HD-789 pBTHD789-3
DNA section
IS Length : 808 bp

Ends


IR Length : 16/18

IRL : GGTTCTGTTGCAAAGTTTTTGGAGTGAAGTTAAAATATAGAGAAAATGGG
IRR : GGTGTGTTGCAAAGTTTGAAAAAACACAGACTTGTTTACAAAATATAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGAGTATTTTGTCAAAAAGCTA0

DNA sequence

GGTTCTGTTGCAAAGTTTTTGGAGTGAAGTTAAAATATAGAGAAAATGGGGCGAGGAGAAGGATGCATGGGATATTTTAAAGGGAAACAATTCAAAAAAG
ATATTATTTTGGTAGCCGTTGGCTATTACTGTCGTTTTTCTTTAAGTTATCGTGATGTGTCTGAGATCCTAAAAGAACAAGGAGTTTCTGTACATCCCAC
AACCATCATGCGTTGGGTTCATGAATATGGCAATTTGATTTATCAAATATGGAAGAAGAAAAACCAGTCTGCACATCATGTTTGGCATGTAGATGAGACG
TACATCAAAGTGAAAGGGGAGTGGTCTTATCTGTATCGTGCGATTGATAGTAATGGATATACACTTGATTTTCAACTTCGAAAAACACGAGATCATCAAG
CAGCATATGCCTTTATAAAAAGGTTGACGAAACAATTTGGAGAACCAACGGTTCTTACAACAGATCAAGCTCCTGCACTGCTTTGTGCGTTCAAAAAACT
GAAAAATAATGGCTTTTATGTGCATATAACACATTGTACGGTTAAGCACCTTAATAACCTGATTGAACAAGATCATCGACATGTCAAACGACGTTTTGCC
AAATCTTCTGGATTCCAAAATATCCGTCATGCTTCACGTACATTGAAAGGAATCGAAACGATTCATGCGATATACAAACAAAAGAGAAGTCAAATTCCAG
ACTTCTCTTTTTCGACGTACAAGGAATTACAGGAGTTATTCAGAACCGCTTAAACTATAACTATATTTTGTAAACAAGTCTGTGTTTTTTCAAACTTTGC
AACACACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
687 bp228 aa67753+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGYFKGKQFKKDIILVAVGYYCRFSLSYRDVSEILKEQGVSVHPTTIMRWVHEYGNLIYQIWKKKNQSAHHVWHVDETYIKVKGEWSYLYRAIDSNGYTL
DFQLRKTRDHQAAYAFIKRLTKQFGEPTVLTTDQAPALLCAFKKLKNNGFYVHITHCTVKHLNNLIEQDHRHVKRRFAKSSGFQNIRHASRTLKGIETIH
AIYKQKRSQIPDFSFSTYKELQELFRTA

 

Blast result :
Comments
ISBth20 is 82% aa similar to IS240F.
References
1] ISfinder annotation (2017)
2] Doggett,N.A., Stubben,C.J., Chertkov,O., Bruce,D.C., Detter,J.C., Johnson,S.L. and Han,C.S. (2013)Genome Announc 1 (6), e01023-13.