ISStin7
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 Streptococcus iniae |
DNA section
IS Length : 1427 bp
Ends
IR Length : 20/25
IRL : TGAACTGCACCCCAAAAGTTAGACACAAAATCTAACAGTTGGGGTGTTTT
IRR : TGTACTGACCCCCAGAAGTTGGACAATTAATTATTGCAAGGATTTGGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAGACTGC | TCG | TAAGGCTTTT | 3 |
TTTAGAAAAA | ATC | TAAGGCTTTT | 3 |
AAAAAGACTA | GAT | GTTCCAAAAC | 3 |
AAAGCCTATG | AAA | TCAACGTTTC | 3 |
AAAGACTCGG | GAT | TGCTTAGCAA | 3 |
DNA sequence
TGAACTGCACCCCAAAAGTTAGACACAAAATCTAACAGTTGGGGTGTTTTTCTTATGAAATTAAGTTATGAAGATAAACTAGAAATATATGAGCTGAAAA
AGAGCGGCGTGTCGTGGACCAATCTTAGCCAGACATACAAGGTAACCATTGCCAATCTCACATACATGATAAAACTCATGGATCGGTATGGCTTAGAAAT
CGTTGAAAAAGGTAAAAATAGGTATTATTCACTCGAATTAAAGCAGGAAATGATAGATAAAGTCTTGATTCATGGTTGCTCTCAACTCTCAGTTTCTCTT
GATTATACCTTGCCAAATCGAGGGATGCTCCCAAATTGGATAGCGCAATACAAGAAAAACGGTTATACTATTCTTGAAAAACCAAGAGGGAGACCTGCTA
AGATGGGACGAAAGCCTAAGAAAAAGCTAGAAGAGATGACTGAATTGGAACGTCTTCAGAAAGAATTAGAATACTTAAGAGCGGAGAATGCTGTGCTAAA
AAAGCTGAGAGAATACCGCTTGAGGGACGAAGCAAAGCTCAAAGAGCAACAGAAATCATTCAAGCATTAACGAATCGGTTTTCCCTAGAGACGCTACTTG
AAATCCTTGATTTACCGCGCTCCACCTATTACTATCAAGTGAAGCGACTAGCTCAAGGAGATAAGGATATAGAACTAAAGAATTTGATTCGAGAGATTTA
TGATGAACATAAAGGAAACTATGGCTATCGTCGGATTTATTTAGAACTCAGAAATCGAGGATTCCTCATCAATCACAAAAAGGTGCAACGCTTGATGACA
GTTATGGGCTTAGCGGCTCGCATTCGTCGTAAGCGCAAGTACTCTTCTTACAAAGGTGAGGTTGGTAAGAAGGCTGATAATCTGATTAAACGTCAATTCG
AAGGTTCTAAACCCTATGAGAAGTGTTATACCGATGTGACAGAGTTTGCCTTACCTGAAGGGAAGCTTTATCTATCGCCAGTTTTTGATGGCTATAACTG
TGAGATTATTGACTTTACCTTATCTCGCTCGCCTGACTTGAAACAGGTTCAAACGATGCTTGAGAAGGCTTTTCCAGCGGATTCATACAGTGGAACTATT
CTCCACAGCGACCAAGGGTGGCAGTACCAGCACCAGTCTTACCATCAGTTTTTGGAAACCAAAGGGATTCGTCCCTCTATGTCTCGAAAGGGAAATAGTC
CAGATAATGGGATGATGGAATCCTTCTTTGGCATTCTCAAATCGGAGATGTTCTATGGACTTGAGAAGTCTTACAAAACCCTTGATGAGCTTGAACAAGC
TATCACAGATTACATTTTTTACTACAACAACAAACGAATCAAAGCAAAACTAAAAGGACTTAGTCCTGTTCAATACAGAACCAAATCCTTGCAATAATTA
ATTGTCCAACTTCTGGGGGTCAGTACA
AGAGCGGCGTGTCGTGGACCAATCTTAGCCAGACATACAAGGTAACCATTGCCAATCTCACATACATGATAAAACTCATGGATCGGTATGGCTTAGAAAT
CGTTGAAAAAGGTAAAAATAGGTATTATTCACTCGAATTAAAGCAGGAAATGATAGATAAAGTCTTGATTCATGGTTGCTCTCAACTCTCAGTTTCTCTT
GATTATACCTTGCCAAATCGAGGGATGCTCCCAAATTGGATAGCGCAATACAAGAAAAACGGTTATACTATTCTTGAAAAACCAAGAGGGAGACCTGCTA
AGATGGGACGAAAGCCTAAGAAAAAGCTAGAAGAGATGACTGAATTGGAACGTCTTCAGAAAGAATTAGAATACTTAAGAGCGGAGAATGCTGTGCTAAA
AAAGCTGAGAGAATACCGCTTGAGGGACGAAGCAAAGCTCAAAGAGCAACAGAAATCATTCAAGCATTAACGAATCGGTTTTCCCTAGAGACGCTACTTG
AAATCCTTGATTTACCGCGCTCCACCTATTACTATCAAGTGAAGCGACTAGCTCAAGGAGATAAGGATATAGAACTAAAGAATTTGATTCGAGAGATTTA
TGATGAACATAAAGGAAACTATGGCTATCGTCGGATTTATTTAGAACTCAGAAATCGAGGATTCCTCATCAATCACAAAAAGGTGCAACGCTTGATGACA
GTTATGGGCTTAGCGGCTCGCATTCGTCGTAAGCGCAAGTACTCTTCTTACAAAGGTGAGGTTGGTAAGAAGGCTGATAATCTGATTAAACGTCAATTCG
AAGGTTCTAAACCCTATGAGAAGTGTTATACCGATGTGACAGAGTTTGCCTTACCTGAAGGGAAGCTTTATCTATCGCCAGTTTTTGATGGCTATAACTG
TGAGATTATTGACTTTACCTTATCTCGCTCGCCTGACTTGAAACAGGTTCAAACGATGCTTGAGAAGGCTTTTCCAGCGGATTCATACAGTGGAACTATT
CTCCACAGCGACCAAGGGTGGCAGTACCAGCACCAGTCTTACCATCAGTTTTTGGAAACCAAAGGGATTCGTCCCTCTATGTCTCGAAAGGGAAATAGTC
CAGATAATGGGATGATGGAATCCTTCTTTGGCATTCTCAAATCGGAGATGTTCTATGGACTTGAGAAGTCTTACAAAACCCTTGATGAGCTTGAACAAGC
TATCACAGATTACATTTTTTACTACAACAACAAACGAATCAAAGCAAAACTAAAAGGACTTAGTCCTGTTCAATACAGAACCAAATCCTTGCAATAATTA
ATTGTCCAACTTCTGGGGGTCAGTACA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 171 aa | 55 | 570 | + | No |
Description : First part of the transposase
ORF sequence :
MKLSYEDKLEIYELKKSGVSWTNLSQTYKVTIANLTYMIKLMDRYGLEIVEKGKNRYYSLELKQEMIDKVLIHGCSQLSVSLDYTLPNRGMLPNWIAQYK
KNGYTILEKPRGRPAKMGRKPKKKLEEMTELERLQKELEYLRAENAVLKKLREYRLRDEAKLKEQQKSFKH
KNGYTILEKPRGRPAKMGRKPKKKLEEMTELERLQKELEYLRAENAVLKKLREYRLRDEAKLKEQQKSFKH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 444 | 1397 | + | No |
Description : Second part of the transposase
ORF sequence :
IGTSSERIRILKSGECCAKKAERIPLEGRSKAQRATEIIQALTNRFSLETLLEILDLPRSTYYYQVKRLAQGDKDIELKNLIREIYDEHKGNYGYRRIYL
ELRNRGFLINHKKVQRLMTVMGLAARIRRKRKYSSYKGEVGKKADNLIKRQFEGSKPYEKCYTDVTEFALPEGKLYLSPVFDGYNCEIIDFTLSRSPDLK
QVQTMLEKAFPADSYSGTILHSDQGWQYQHQSYHQFLETKGIRPSMSRKGNSPDNGMMESFFGILKSEMFYGLEKSYKTLDELEQAITDYIFYYNNKRIK
AKLKGLSPVQYRTKSLQ
ELRNRGFLINHKKVQRLMTVMGLAARIRRKRKYSSYKGEVGKKADNLIKRQFEGSKPYEKCYTDVTEFALPEGKLYLSPVFDGYNCEIIDFTLSRSPDLK
QVQTMLEKAFPADSYSGTILHSDQGWQYQHQSYHQFLETKGIRPSMSRKGNSPDNGMMESFFGILKSEMFYGLEKSYKTLDELEQAITDYIFYYNNKRIK
AKLKGLSPVQYRTKSLQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1343 bp | 447 aa | 55 | 1397 | + | Yes |
Chemistry : DDE
ORF sequence :
MKLSYEDKLEIYELKKSGVSWTNLSQTYKVTIANLTYMIKLMDRYGLEIVEKGKNRYYSLELKQEMIDKVLIHGCSQLSVSLDYTLPNRGMLPNWIAQYK
KNGYTILEKPRGRPAKMGRKPKKKLEEMTELERLQKELEYLRAENAVLKKAERIPLEGRSKAQRATEIIQALTNRFSLETLLEILDLPRSTYYYQVKRLA
QGDKDIELKNLIREIYDEHKGNYGYRRIYLELRNRGFLINHKKVQRLMTVMGLAARIRRKRKYSSYKGEVGKKADNLIKRQFEGSKPYEKCYTDVTEFAL
PEGKLYLSPVFDGYNCEIIDFTLSRSPDLKQVQTMLEKAFPADSYSGTILHSDQGWQYQHQSYHQFLETKGIRPSMSRKGNSPDNGMMESFFGILKSEMF
YGLEKSYKTLDELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSLQ
KNGYTILEKPRGRPAKMGRKPKKKLEEMTELERLQKELEYLRAENAVLKKAERIPLEGRSKAQRATEIIQALTNRFSLETLLEILDLPRSTYYYQVKRLA
QGDKDIELKNLIREIYDEHKGNYGYRRIYLELRNRGFLINHKKVQRLMTVMGLAARIRRKRKYSSYKGEVGKKADNLIKRQFEGSKPYEKCYTDVTEFAL
PEGKLYLSPVFDGYNCEIIDFTLSRSPDLKQVQTMLEKAFPADSYSGTILHSDQGWQYQHQSYHQFLETKGIRPSMSRKGNSPDNGMMESFFGILKSEMF
YGLEKSYKTLDELEQAITDYIFYYNNKRIKAKLKGLSPVQYRTKSLQ
Blast result :
Comments
ISStin7 is 92% aa similar to ISSeq3.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder