ISStin10
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017952 | ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 Streptococcus iniae |
DNA section
IS Length : 758 bp
Ends
Left end : TTTATGTGACTTTTAGTCCGTTTCACTCCGAAGGTGTGAAACAAAAAACCACCCGCTATGCGGGTGTGCATCAAAGGTTATACCCAAAAGACTCCTAACG II struct. : No
Right end : AAGGCTTGAACAAAGTGAAAGCCAGCGCCTTTAGACGCTGGCTTGTATTCTGGGCTTATAGCCCTTGTTCAAACCACCCGTTAGACGGGTGGTTATGATT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TATAGAGGCTTCTTT | TTAG | AGTTTAAGCAAGC | GATT |
DNA sequence
TTTATGTGACTTTTAGTCCGTTTCACTCCGAAGGTGTGAAACAAAAAACCACCCGCTATGCGGGTGTGCATCAAAGGTTATACCCAAAAGACTCCTAACG
CGGTCCAATATAGGTGTTCAAGCCAATTGTAAAGCGAAAGGAGTCGAAATATGGCACAGAAGGCACATAGCTTATCACACACAAAGTGGATGTGTAAATA
TCACATTGTGTTCACCCCTAAGTATAGACGAAAAATAATCTATAATCAATACAGAAGTAGTCTCGGTGAGATTTTTCAGAGACTGTGTAGCTATAAAGGT
GTAGAAATAATTGAAGGTCATTTGATGCCAGACCATGTCCACATGTTGGTAAGTATTCCCCCAAGAATTAGTGTTTCAAGTTTTATGGGATATTTAAAAG
GAAAAAGCGCACTCATGATGTTTGATAAACACGCCAATCTCAAATATAAGTTTGGTAATCGACATTTTTGGGCTGAAGGTTATTATGTAAGTACAGTTGG
ATTGAATGAAGCCACAATAAAAAAATACATACAAGATCAAGAGAAACATGATATAGCAGTGGATAAATTAAGTGTAAAAGAATATGAAGATCCCTTTAGG
GATAGTGGCAAGTAATACAAAGGCCTCTTTGAGAGGCAAGTGACGAGTCAAGAGCAATAAGGCTTGAACAAAGTGAAAGCCAGCGCCTTTAGACGCTGGC
TTGTATTCTGGGCTTATAGCCCTTGTTCAAACCACCCGTTAGACGGGTGGTTATGATT
CGGTCCAATATAGGTGTTCAAGCCAATTGTAAAGCGAAAGGAGTCGAAATATGGCACAGAAGGCACATAGCTTATCACACACAAAGTGGATGTGTAAATA
TCACATTGTGTTCACCCCTAAGTATAGACGAAAAATAATCTATAATCAATACAGAAGTAGTCTCGGTGAGATTTTTCAGAGACTGTGTAGCTATAAAGGT
GTAGAAATAATTGAAGGTCATTTGATGCCAGACCATGTCCACATGTTGGTAAGTATTCCCCCAAGAATTAGTGTTTCAAGTTTTATGGGATATTTAAAAG
GAAAAAGCGCACTCATGATGTTTGATAAACACGCCAATCTCAAATATAAGTTTGGTAATCGACATTTTTGGGCTGAAGGTTATTATGTAAGTACAGTTGG
ATTGAATGAAGCCACAATAAAAAAATACATACAAGATCAAGAGAAACATGATATAGCAGTGGATAAATTAAGTGTAAAAGAATATGAAGATCCCTTTAGG
GATAGTGGCAAGTAATACAAAGGCCTCTTTGAGAGGCAAGTGACGAGTCAAGAGCAATAAGGCTTGAACAAAGTGAAAGCCAGCGCCTTTAGACGCTGGC
TTGTATTCTGGGCTTATAGCCCTTGTTCAAACCACCCGTTAGACGGGTGGTTATGATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
465 bp | 154 aa | 151 | 615 | + | No |
Chemistry : Y1
ORF sequence :
MAQKAHSLSHTKWMCKYHIVFTPKYRRKIIYNQYRSSLGEIFQRLCSYKGVEIIEGHLMPDHVHMLVSIPPRISVSSFMGYLKGKSALMMFDKHANLKYK
FGNRHFWAEGYYVSTVGLNEATIKKYIQDQEKHDIAVDKLSVKEYEDPFRDSGK
FGNRHFWAEGYYVSTVGLNEATIKKYIQDQEKHDIAVDKLSVKEYEDPFRDSGK
Blast result :
Comments
ISStin10 is 98% aa similar to ISSsu4 (but only 86% DNA identity).
References
1] Areej Alsheikh-Hussain (2017) Direct submission.
2] Gong,H.-Y., Wu,S.-H. and Chen,C.-Y. (2016) Direct GenBank submission.
2] Gong,H.-Y., Wu,S.-H. and Chen,C.-Y. (2016) Direct GenBank submission.