ISStin9

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017952 ND Streptococcus iniae
Streptococcus iniae 89353
Streptococcus iniae YSFST01-82
Streptococcus iniae ISNO
Streptococcus iniae ISET0901
Streptococcus iniae SF1
Streptococcus iniae
DNA section
IS Length : 1073 bp

Ends


IR Length : 18/27

IRL : AGAAAGTTCTAAAATGAAGTTAGCCATCTGAGGGTATGAAAAAACATCTC
IRR : GCTAAATTTCAAGTCCAAGTTAGCCAACGGTTAAAAACTCTTTAGGAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTAAGTTTGCATTTTATCTAAT2
ACTATTTTTTCTTTTTTTTTAAAATCAAAAAGCC14
AAGCTAAAGCTTCCGGATTATTTTCTAAAGCTTT14
AAGAGAAGCCTTGTTTTCTT(T/c)CTAATTATTTTAA14
ATCAGTTGATAAATCAGCATTTTTTAAACTAACA14
AAAAATTGATGTTAAAGGTAAAGCTCTTCTTAT14
TCAGTACAGATTGCTTAGCAATTGAGTCTTTTT13
ATTTATTTTAGCTTTTCAATAACTGACTTGATGT14
CGCATGAGCTAATGGCTTGGGGGATGATTTGAAT14
CCTTTTCAAGGTCTCTTTTCAAGAAGCCCTTTTG14

DNA sequence

AGAAAGTTCTAAAATGAAGTTAGCCATCTGAGGGTATGAAAAAACATCTCAAAGAGATATACTTGTAGTTCACCACAAACACAAGATAGGACACTTTGAG
ATGCATGAACATTATACACCAAAAGGAAAACATTTGACAATAGCTGAGCGTTACTTCATCGAGAAATGGAAGTCAGAAGGAAAGTCCAATAGAGCCATCG
CTAACTTGCTAGGTAAAGCGCCTCAAACCATTCATAATGAGGTTAAACGAGGACTTGTTAGACAACAAATTCGTAAAGGTAAATTTGAAATGATTTATCA
AGCTGACTACGCTCAAGCTAGCTATGAGAATAAACGACGAAATTCTATTCGTTCTATTGGCTTGGATAAAGATACGAAAGAGAGGATTCTGCACTATATG
AGGCAGAACTTTTCACCTGAAATGATGGTGAAGTCGAAAGGTATAGCTGTTCCTGTTTCAACCATCTATTATTGGATTCATAACGGACACCTTGGCATCC
ATTCTGATCACATCTTGTATCCAAGGAAAAGAAAGGGAAAATCAAAGAAGGCTAGCCCTCGTTTCAAACCTGCTGGTCAATCCATTGAGAAAAGACCTGA
TGCGATTAATCGTAGACTTGAAAATGGGCATTATGAAATTGATACGGTCATTCTAACAAGGGCTAAGAATGAATGTCTACTAACTCTAACAGACCGCCGT
AGTCGTCACCAGATTATCAGACTCATTCCGGATAAGTCTGCTCAGTCGGTCAATCATGCCTTAGAAAGTATAGTAAAGACTCACTCTATTCACTCTATTA
CAGCTGATAACGGAACTGAATTCAACAGACTTTCTCTTGTCTTTCCAAAAGAAGATATCTACTACGCACATCCCTACGCTTCCTGGGAAAGGGGAACGAA
TGAGAACCACAACAGACTGATCAGAAGATGGTTACCTAAAGGAACAAAGAAAACGACCCAAAGAGAGGTCGCATTCATTGAAAATTGGATAAACAACTAT
CCTAAGAAAATATTAGACTACAAATCTCCTAAAGAGTTTTTAACCGTTGGCTAACTTGGACTTGAAATTTAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa1011054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHEHYTPKGKHLTIAERYFIEKWKSEGKSNRAIANLLGKAPQTIHNEVKRGLVRQQIRKGKFEMIYQADYAQASYENKRRNSIRSIGLDKDTKERILHYM
RQNFSPEMMVKSKGIAVPVSTIYYWIHNGHLGIHSDHILYPRKRKGKSKKASPRFKPAGQSIEKRPDAINRRLENGHYEIDTVILTRAKNECLLTLTDRR
SRHQIIRLIPDKSAQSVNHALESIVKTHSIHSITADNGTEFNRLSLVFPKEDIYYAHPYASWERGTNENHNRLIRRWLPKGTKKTTQREVAFIENWINNY
PKKILDYKSPKEFLTVG

 

Blast result :
Comments
ISStin9 is 81% aa similar to ISSpn8.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder