ISStin9
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017952 | ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 Streptococcus iniae |
DNA section
IS Length : 1073 bp
Ends
IR Length : 18/27
IRL : AGAAAGTTCTAAAATGAAGTTAGCCATCTGAGGGTATGAAAAAACATCTC
IRR : GCTAAATTTCAAGTCCAAGTTAGCCAACGGTTAAAAACTCTTTAGGAGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAAGTTTGC | AT | TTTATCTAAT | 2 |
ACTATTTTTT | CTTTTTTTTTAAAA | TCAAAAAGCC | 14 |
AAGCTAAAGC | TTCCGGATTATTTT | CTAAAGCTTT | 14 |
AAGAGAAGCC | TTGTTTTCTT(T/c)CTA | ATTATTTTAA | 14 |
ATCAGTTGAT | AAATCAGCATTTTT | TAAACTAACA | 14 |
AAAAATTGAT | GTTAAAGGTAAAGC | TCTTCTTAT | 14 |
TCAGTACAGA | TTGCTTAGCAATT | GAGTCTTTTT | 13 |
ATTTATTTTA | GCTTTTCAATAACT | GACTTGATGT | 14 |
CGCATGAGCT | AATGGCTTGGGGGA | TGATTTGAAT | 14 |
CCTTTTCAAG | GTCTCTTTTCAAGA | AGCCCTTTTG | 14 |
DNA sequence
AGAAAGTTCTAAAATGAAGTTAGCCATCTGAGGGTATGAAAAAACATCTCAAAGAGATATACTTGTAGTTCACCACAAACACAAGATAGGACACTTTGAG
ATGCATGAACATTATACACCAAAAGGAAAACATTTGACAATAGCTGAGCGTTACTTCATCGAGAAATGGAAGTCAGAAGGAAAGTCCAATAGAGCCATCG
CTAACTTGCTAGGTAAAGCGCCTCAAACCATTCATAATGAGGTTAAACGAGGACTTGTTAGACAACAAATTCGTAAAGGTAAATTTGAAATGATTTATCA
AGCTGACTACGCTCAAGCTAGCTATGAGAATAAACGACGAAATTCTATTCGTTCTATTGGCTTGGATAAAGATACGAAAGAGAGGATTCTGCACTATATG
AGGCAGAACTTTTCACCTGAAATGATGGTGAAGTCGAAAGGTATAGCTGTTCCTGTTTCAACCATCTATTATTGGATTCATAACGGACACCTTGGCATCC
ATTCTGATCACATCTTGTATCCAAGGAAAAGAAAGGGAAAATCAAAGAAGGCTAGCCCTCGTTTCAAACCTGCTGGTCAATCCATTGAGAAAAGACCTGA
TGCGATTAATCGTAGACTTGAAAATGGGCATTATGAAATTGATACGGTCATTCTAACAAGGGCTAAGAATGAATGTCTACTAACTCTAACAGACCGCCGT
AGTCGTCACCAGATTATCAGACTCATTCCGGATAAGTCTGCTCAGTCGGTCAATCATGCCTTAGAAAGTATAGTAAAGACTCACTCTATTCACTCTATTA
CAGCTGATAACGGAACTGAATTCAACAGACTTTCTCTTGTCTTTCCAAAAGAAGATATCTACTACGCACATCCCTACGCTTCCTGGGAAAGGGGAACGAA
TGAGAACCACAACAGACTGATCAGAAGATGGTTACCTAAAGGAACAAAGAAAACGACCCAAAGAGAGGTCGCATTCATTGAAAATTGGATAAACAACTAT
CCTAAGAAAATATTAGACTACAAATCTCCTAAAGAGTTTTTAACCGTTGGCTAACTTGGACTTGAAATTTAGC
ATGCATGAACATTATACACCAAAAGGAAAACATTTGACAATAGCTGAGCGTTACTTCATCGAGAAATGGAAGTCAGAAGGAAAGTCCAATAGAGCCATCG
CTAACTTGCTAGGTAAAGCGCCTCAAACCATTCATAATGAGGTTAAACGAGGACTTGTTAGACAACAAATTCGTAAAGGTAAATTTGAAATGATTTATCA
AGCTGACTACGCTCAAGCTAGCTATGAGAATAAACGACGAAATTCTATTCGTTCTATTGGCTTGGATAAAGATACGAAAGAGAGGATTCTGCACTATATG
AGGCAGAACTTTTCACCTGAAATGATGGTGAAGTCGAAAGGTATAGCTGTTCCTGTTTCAACCATCTATTATTGGATTCATAACGGACACCTTGGCATCC
ATTCTGATCACATCTTGTATCCAAGGAAAAGAAAGGGAAAATCAAAGAAGGCTAGCCCTCGTTTCAAACCTGCTGGTCAATCCATTGAGAAAAGACCTGA
TGCGATTAATCGTAGACTTGAAAATGGGCATTATGAAATTGATACGGTCATTCTAACAAGGGCTAAGAATGAATGTCTACTAACTCTAACAGACCGCCGT
AGTCGTCACCAGATTATCAGACTCATTCCGGATAAGTCTGCTCAGTCGGTCAATCATGCCTTAGAAAGTATAGTAAAGACTCACTCTATTCACTCTATTA
CAGCTGATAACGGAACTGAATTCAACAGACTTTCTCTTGTCTTTCCAAAAGAAGATATCTACTACGCACATCCCTACGCTTCCTGGGAAAGGGGAACGAA
TGAGAACCACAACAGACTGATCAGAAGATGGTTACCTAAAGGAACAAAGAAAACGACCCAAAGAGAGGTCGCATTCATTGAAAATTGGATAAACAACTAT
CCTAAGAAAATATTAGACTACAAATCTCCTAAAGAGTTTTTAACCGTTGGCTAACTTGGACTTGAAATTTAGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 101 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MHEHYTPKGKHLTIAERYFIEKWKSEGKSNRAIANLLGKAPQTIHNEVKRGLVRQQIRKGKFEMIYQADYAQASYENKRRNSIRSIGLDKDTKERILHYM
RQNFSPEMMVKSKGIAVPVSTIYYWIHNGHLGIHSDHILYPRKRKGKSKKASPRFKPAGQSIEKRPDAINRRLENGHYEIDTVILTRAKNECLLTLTDRR
SRHQIIRLIPDKSAQSVNHALESIVKTHSIHSITADNGTEFNRLSLVFPKEDIYYAHPYASWERGTNENHNRLIRRWLPKGTKKTTQREVAFIENWINNY
PKKILDYKSPKEFLTVG
RQNFSPEMMVKSKGIAVPVSTIYYWIHNGHLGIHSDHILYPRKRKGKSKKASPRFKPAGQSIEKRPDAINRRLENGHYEIDTVILTRAKNECLLTLTDRR
SRHQIIRLIPDKSAQSVNHALESIVKTHSIHSITADNGTEFNRLSLVFPKEDIYYAHPYASWERGTNENHNRLIRRWLPKGTKKTTQREVAFIENWINNY
PKKILDYKSPKEFLTVG
Blast result :
Comments
ISStin9 is 81% aa similar to ISSpn8.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder