ISStin4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017952 ND Streptococcus iniae
Streptococcus iniae 89353
Streptococcus iniae YSFST01-82
Streptococcus iniae ISNO
Streptococcus iniae ISET0901
Streptococcus iniae SF1
Streptococcus iniae
DNA section
IS Length : 1538 bp

Ends


IR Length : 20/24

IRL : TGTAATTTCTCAAAGTAAGTTCCACTTAGGGTTAGAAACCGGAAGTTAGT
IRR : GCTAAATTTTCAAAGTAAGTTCCAGCTCCTGTAGGAGCGGAATTTAGCCT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGTTTGAGGAATTTTTTGACTGAAGAATGAT12
AAAATCGACTAAAAAATGTCAC2

DNA sequence

TGTAATTTCTCAAAGTAAGTTCCACTTAGGGTTAGAAACCGGAAGTTAGTGTGAGAAGGATTTTTATGGTGGAATTAAGTCTGAGACGTTTGAGTTAGAA
ATGAGAATATCTATCTTGACAAAACATAAACACTTAACCCTCTCAGACCGTAACGACGTCCAATCAGGTTTGGATAGAGGAGAAACCTTTAAATCCATTG
GACTAAAACTCCAGAAAGACCCTACTACAATCGCTAAGGAAGTCAAACGAAATAAGCAATTCAGAGATGGTTCTAAGAACTGTCTAGATTGTCCCCTCTT
GAAAAAAGCTCCCTATGTTTGTAATGGGTGCCCAAAAAGGAGAATCAACTGCGGTTACAAGAAAATCTTCTATTATGCTAAGCAAGCTCAGAAAAACTAC
GAACAACTCCTTGTCCAAGCCAGAGAAGGTACTCCACTTAATAAAGAAACCTTTTGGGAGATGGACAAGGTAGTTTCTAAAGGAGTCAAAAAGGGACAGC
GTATCTATCACATCCTCAAAACAAATAAGCTTGATGTCAGTTCTTCAACTGTTTATCGCCATATCAAGAAAGGCTACTTATCTATCGCACCTATCGATCT
GCCTAGAGCTGTGAAGTTCAAGCAAAGACGTAAAATGACGCTTCCTCCTATTCCCAAAGCCAACAAAGAAGGGAGACGTTACGAGGACTTCTTAGACTAC
ATGAACCAGACAGAACTCAGCTCCTGGCTTGAGATGGATACAGTCATTGGACGGGTTGGAGGAAAGGTTCTTCTGACTTTCAATGTCTCCTTTTGTAACT
TCATCTTTGCCAAACTGATGGACTCTAAAACAGCTATTGAGACAGCTAAACACATCCAAGCCATTAAGAGGACACTCTATGACAATCATGTGGACTTCTT
TGAGTTATTTCCAGTCATCCTAACAGATAACGGGGGAGAATTCGCTAGAGTAGATGAAATCGAGATTGACGTCAAAGGACAGTCTCAGCTCTTCTTCTGT
GACCCAAACCGTTCTGACCAAAAAGCTAGAATCGAGAAGAATCATACCCTCATCAGAGATATACTTCCCAAAGGAACATCATTTGATACGCTAACTCAAG
AAGATATCAATCTAACCCTATCGCATATCAACAGCGTGAAAAGGCAGTCTCTAAACGGAAAGTCTGCTTATGAACTATTCTGCTTTACATATGGAGAAAA
TGTCGCCAGTCTACTTGGCATTACTAAAATTCCGGCAGCGAAAGTCTGCCAATCTCCGATACTCTTGAAAGACAAAATCTAATATAAAAATATAAATCTA
ATTCCCTCAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATTAAGGGATTTTGTGTACACTTTTTTCTGAGAAAAGA
TGGTTTAAAAGCTTATAAAATCGATCATGATAAAAACCAGTGGAACTTACTTTGAGACGGATTTCCACTGGTTTTATCAATTTTTATCAGGCTAAATTCC
GCTCCTACAGGAGCTGGAACTTACTTTGAAAATTTAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa1161282+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKHKHLTLSDRNDVQSGLDRGETFKSIGLKLQKDPTTIAKEVKRNKQFRDGSKNCLDCPLLKKAPYVCNGCPKRRINCGYKKIFYYAKQAQKNYEQLLV
QAREGTPLNKETFWEMDKVVSKGVKKGQRIYHILKTNKLDVSSSTVYRHIKKGYLSIAPIDLPRAVKFKQRRKMTLPPIPKANKEGRRYEDFLDYMNQTE
LSSWLEMDTVIGRVGGKVLLTFNVSFCNFIFAKLMDSKTAIETAKHIQAIKRTLYDNHVDFFELFPVILTDNGGEFARVDEIEIDVKGQSQLFFCDPNRS
DQKARIEKNHTLIRDILPKGTSFDTLTQEDINLTLSHINSVKRQSLNGKSAYELFCFTYGENVASLLGITKIPAAKVCQSPILLKDKI

 

Blast result :
Comments
ISStin4 is 93% aa similar to ISSag9.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder