ISStin4
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017952 | ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 Streptococcus iniae |
DNA section
IS Length : 1538 bp
Ends
IR Length : 20/24
IRL : TGTAATTTCTCAAAGTAAGTTCCACTTAGGGTTAGAAACCGGAAGTTAGT
IRR : GCTAAATTTTCAAAGTAAGTTCCAGCTCCTGTAGGAGCGGAATTTAGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGTTTGAGG | AATTTTTTGACT | GAAGAATGAT | 12 |
AAAATCGACT | AA | AAAATGTCAC | 2 |
DNA sequence
TGTAATTTCTCAAAGTAAGTTCCACTTAGGGTTAGAAACCGGAAGTTAGTGTGAGAAGGATTTTTATGGTGGAATTAAGTCTGAGACGTTTGAGTTAGAA
ATGAGAATATCTATCTTGACAAAACATAAACACTTAACCCTCTCAGACCGTAACGACGTCCAATCAGGTTTGGATAGAGGAGAAACCTTTAAATCCATTG
GACTAAAACTCCAGAAAGACCCTACTACAATCGCTAAGGAAGTCAAACGAAATAAGCAATTCAGAGATGGTTCTAAGAACTGTCTAGATTGTCCCCTCTT
GAAAAAAGCTCCCTATGTTTGTAATGGGTGCCCAAAAAGGAGAATCAACTGCGGTTACAAGAAAATCTTCTATTATGCTAAGCAAGCTCAGAAAAACTAC
GAACAACTCCTTGTCCAAGCCAGAGAAGGTACTCCACTTAATAAAGAAACCTTTTGGGAGATGGACAAGGTAGTTTCTAAAGGAGTCAAAAAGGGACAGC
GTATCTATCACATCCTCAAAACAAATAAGCTTGATGTCAGTTCTTCAACTGTTTATCGCCATATCAAGAAAGGCTACTTATCTATCGCACCTATCGATCT
GCCTAGAGCTGTGAAGTTCAAGCAAAGACGTAAAATGACGCTTCCTCCTATTCCCAAAGCCAACAAAGAAGGGAGACGTTACGAGGACTTCTTAGACTAC
ATGAACCAGACAGAACTCAGCTCCTGGCTTGAGATGGATACAGTCATTGGACGGGTTGGAGGAAAGGTTCTTCTGACTTTCAATGTCTCCTTTTGTAACT
TCATCTTTGCCAAACTGATGGACTCTAAAACAGCTATTGAGACAGCTAAACACATCCAAGCCATTAAGAGGACACTCTATGACAATCATGTGGACTTCTT
TGAGTTATTTCCAGTCATCCTAACAGATAACGGGGGAGAATTCGCTAGAGTAGATGAAATCGAGATTGACGTCAAAGGACAGTCTCAGCTCTTCTTCTGT
GACCCAAACCGTTCTGACCAAAAAGCTAGAATCGAGAAGAATCATACCCTCATCAGAGATATACTTCCCAAAGGAACATCATTTGATACGCTAACTCAAG
AAGATATCAATCTAACCCTATCGCATATCAACAGCGTGAAAAGGCAGTCTCTAAACGGAAAGTCTGCTTATGAACTATTCTGCTTTACATATGGAGAAAA
TGTCGCCAGTCTACTTGGCATTACTAAAATTCCGGCAGCGAAAGTCTGCCAATCTCCGATACTCTTGAAAGACAAAATCTAATATAAAAATATAAATCTA
ATTCCCTCAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATTAAGGGATTTTGTGTACACTTTTTTCTGAGAAAAGA
TGGTTTAAAAGCTTATAAAATCGATCATGATAAAAACCAGTGGAACTTACTTTGAGACGGATTTCCACTGGTTTTATCAATTTTTATCAGGCTAAATTCC
GCTCCTACAGGAGCTGGAACTTACTTTGAAAATTTAGC
ATGAGAATATCTATCTTGACAAAACATAAACACTTAACCCTCTCAGACCGTAACGACGTCCAATCAGGTTTGGATAGAGGAGAAACCTTTAAATCCATTG
GACTAAAACTCCAGAAAGACCCTACTACAATCGCTAAGGAAGTCAAACGAAATAAGCAATTCAGAGATGGTTCTAAGAACTGTCTAGATTGTCCCCTCTT
GAAAAAAGCTCCCTATGTTTGTAATGGGTGCCCAAAAAGGAGAATCAACTGCGGTTACAAGAAAATCTTCTATTATGCTAAGCAAGCTCAGAAAAACTAC
GAACAACTCCTTGTCCAAGCCAGAGAAGGTACTCCACTTAATAAAGAAACCTTTTGGGAGATGGACAAGGTAGTTTCTAAAGGAGTCAAAAAGGGACAGC
GTATCTATCACATCCTCAAAACAAATAAGCTTGATGTCAGTTCTTCAACTGTTTATCGCCATATCAAGAAAGGCTACTTATCTATCGCACCTATCGATCT
GCCTAGAGCTGTGAAGTTCAAGCAAAGACGTAAAATGACGCTTCCTCCTATTCCCAAAGCCAACAAAGAAGGGAGACGTTACGAGGACTTCTTAGACTAC
ATGAACCAGACAGAACTCAGCTCCTGGCTTGAGATGGATACAGTCATTGGACGGGTTGGAGGAAAGGTTCTTCTGACTTTCAATGTCTCCTTTTGTAACT
TCATCTTTGCCAAACTGATGGACTCTAAAACAGCTATTGAGACAGCTAAACACATCCAAGCCATTAAGAGGACACTCTATGACAATCATGTGGACTTCTT
TGAGTTATTTCCAGTCATCCTAACAGATAACGGGGGAGAATTCGCTAGAGTAGATGAAATCGAGATTGACGTCAAAGGACAGTCTCAGCTCTTCTTCTGT
GACCCAAACCGTTCTGACCAAAAAGCTAGAATCGAGAAGAATCATACCCTCATCAGAGATATACTTCCCAAAGGAACATCATTTGATACGCTAACTCAAG
AAGATATCAATCTAACCCTATCGCATATCAACAGCGTGAAAAGGCAGTCTCTAAACGGAAAGTCTGCTTATGAACTATTCTGCTTTACATATGGAGAAAA
TGTCGCCAGTCTACTTGGCATTACTAAAATTCCGGCAGCGAAAGTCTGCCAATCTCCGATACTCTTGAAAGACAAAATCTAATATAAAAATATAAATCTA
ATTCCCTCAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATTAAGGGATTTTGTGTACACTTTTTTCTGAGAAAAGA
TGGTTTAAAAGCTTATAAAATCGATCATGATAAAAACCAGTGGAACTTACTTTGAGACGGATTTCCACTGGTTTTATCAATTTTTATCAGGCTAAATTCC
GCTCCTACAGGAGCTGGAACTTACTTTGAAAATTTAGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 116 | 1282 | + | No |
Chemistry : DDE
ORF sequence :
MTKHKHLTLSDRNDVQSGLDRGETFKSIGLKLQKDPTTIAKEVKRNKQFRDGSKNCLDCPLLKKAPYVCNGCPKRRINCGYKKIFYYAKQAQKNYEQLLV
QAREGTPLNKETFWEMDKVVSKGVKKGQRIYHILKTNKLDVSSSTVYRHIKKGYLSIAPIDLPRAVKFKQRRKMTLPPIPKANKEGRRYEDFLDYMNQTE
LSSWLEMDTVIGRVGGKVLLTFNVSFCNFIFAKLMDSKTAIETAKHIQAIKRTLYDNHVDFFELFPVILTDNGGEFARVDEIEIDVKGQSQLFFCDPNRS
DQKARIEKNHTLIRDILPKGTSFDTLTQEDINLTLSHINSVKRQSLNGKSAYELFCFTYGENVASLLGITKIPAAKVCQSPILLKDKI
QAREGTPLNKETFWEMDKVVSKGVKKGQRIYHILKTNKLDVSSSTVYRHIKKGYLSIAPIDLPRAVKFKQRRKMTLPPIPKANKEGRRYEDFLDYMNQTE
LSSWLEMDTVIGRVGGKVLLTFNVSFCNFIFAKLMDSKTAIETAKHIQAIKRTLYDNHVDFFELFPVILTDNGGEFARVDEIEIDVKGQSQLFFCDPNRS
DQKARIEKNHTLIRDILPKGTSFDTLTQEDINLTLSHINSVKRQSLNGKSAYELFCFTYGENVASLLGITKIPAAKVCQSPILLKDKI
Blast result :
Comments
ISStin4 is 93% aa similar to ISSag9.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder