ISStin3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017952 ND Streptococcus iniae
Streptococcus iniae 89353
Streptococcus iniae YSFST01-82
Streptococcus iniae ISNO
Streptococcus iniae ISET0901
Streptococcus iniae SF1
DNA section
IS Length : 1692 bp

Ends


IR Length : 15/16

IRL : CAGAGTGAAGACAAAGTCCCTGTCTTCACTCTTTTTGATGTTTTTCAAAA
IRR : TCAGATTGAAGACAAACTAGTGCCCTTGCTAGTTTGTTTTTTATTGTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CATGTAAAAAAACC(g/a)CACGCGTGTGGTTTTTTTACATG18
CATAAAAAAAGAGGCTAAGGCCTCTTTTTTTATAA14

DNA sequence

TCAGAGTGAAGACAAAGTCCCTGTCTTCACTCTTTTTGATGTTTTTCAAAAGTGGCTCGGACGTAAGCGACTTCCTTCGGAATTCCATTACTCATTTTTT
AGCCCTGGTCTAAAAAATTCCGTCGTGGCTTTTCTAATTCGGAATAAGCCACTCATGCCACCGGAAAAACATCACAATCGTCATTAAAAGTGAGAGATTT
TCTCTTCTTGGGAGTATAATAATAGTAAAAATAATTGTGAGGTGCTCTCTATGTTTCACAAAGAAAATCCTAATTACAATCGCAATCAAGTCGGTTTTTA
TACCCTAGATGAGTTAGTTCCAGAAGATCATCTGCTTCGTCAAATTGACCAAGCTATTGATTTCTCTTTTATTTATGACTTAGTGACAGATAGTTATTGT
CTTGATAATGGGCGTCCTAGTTTAGATCCAGTGATGTTAGTTAAACTCCCTATTATCCAATGTCTCTTTGGTATTCGTTCTATGAGACAAACCATTAAAG
AGATAGAAGTGAATGTGGCTTACCGCTGGTTTCTTGGATTGACATTGGAAGATAAGGTCCCTCATTTTACGACTTACGGCAAGAACTACAGTCGTCGTTT
TCAAGATAAACAAGTGATTGAAGCCATCTTTTCTCATATATTAGGGCTATGCCTTAATGCTGGGCTGATTGATCCGACTGAAATTTTTGTGGATGGCACT
CATATCAAGGCAGCTGCTAACAGTCACAAATATAGCAATCAGAAAGTTGATAGACAAGCTAAGTTTATGAGTGACCAATTGGAGCTGGAAATTGCTAGGG
ACAGGGAGAAACATGAAAAAAAGTCGCTAGGGCTCGCCAAAGAAAAAGAGCCCATAAATAAGAAAGTTTCTACGACCGATTCTGAAAGTGGTTGGTATCA
TAAGGGAGAACATAAAGATGTCTTTGCTTACACAAGTCAAGTGGCATGCGATAAGAATGGTTGGGTCTTAGCCTATACTGTAGATGCAGGAAATACTCAT
GATAGTCAAGCATTTCCTGCACTTTGGAAGAAGATAAAAGAGTTCCGGCCAGACTTTATTATCGCTGATTCTGGCTACAAGACTCCTAGTATTGCCAAGT
TACTCTTGGATAATGAAGTGAGACCTGTTTTCCCCTATACTAGGCCTCGTGGTAAGAAAGGCAATTTAAGACCAAATGATTTTATTTATGACTCCTATTA
TGAGTGTTATCTTTGTCCTGAACACCAAGTATTGTCTTATACAACAACAAATCGAGCTGGCTACAGAGAATATAAAAGTGCCCCCGAAATTTGTGTTTCT
TGTCCCCTTCTAGGAATTTGTACTGACAGTAAGAATCACCAAAAGGTAGTGACCCGACATATCTGGAAAGACTACCTGGATATTTGTGAGGATATTCGGC
ATCAAAGTGATATGAAAGAACTCTATAAACAGCGCAAACAGAGTATTGAGCGGCTTTTTGGAACGGCTAAAGAATACCACAACCTTCGTTATACTAGAGA
AATTGGAAAGTCCAAAATGAAAGCTAAAGTTGGACTGACTTTAGCGTGCCTAAATCTCAAAAAATGGGTTAAAATGATGGCTGGGAAGCCTTTTTATTTT
GGCCTTAAATGCCTTATTTATCTGATTTTAGTGAAATTTAGGCGAAACAATAAAAAACAAACTAGCAAGGGCACTAGTTTGTCTTCAATCTGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1443 bp480 aa2511693+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFHKENPNYNRNQVGFYTLDELVPEDHLLRQIDQAIDFSFIYDLVTDSYCLDNGRPSLDPVMLVKLPIIQCLFGIRSMRQTIKEIEVNVAYRWFLGLTLE
DKVPHFTTYGKNYSRRFQDKQVIEAIFSHILGLCLNAGLIDPTEIFVDGTHIKAAANSHKYSNQKVDRQAKFMSDQLELEIARDREKHEKKSLGLAKEKE
PINKKVSTTDSESGWYHKGEHKDVFAYTSQVACDKNGWVLAYTVDAGNTHDSQAFPALWKKIKEFRPDFIIADSGYKTPSIAKLLLDNEVRPVFPYTRPR
GKKGNLRPNDFIYDSYYECYLCPEHQVLSYTTTNRAGYREYKSAPEICVSCPLLGICTDSKNHQKVVTRHIWKDYLDICEDIRHQSDMKELYKQRKQSIE
RLFGTAKEYHNLRYTREIGKSKMKAKVGLTLACLNLKKWVKMMAGKPFYFGLKCLIYLILVKFRRNNKKQTSKGTSLSSI

 

Blast result :
Comments
ISStin3 is 88% aa similar to ISSag8.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder