ISStin3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017952 | ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 |
DNA section
IS Length : 1692 bp
Ends
IR Length : 15/16
IRL : CAGAGTGAAGACAAAGTCCCTGTCTTCACTCTTTTTGATGTTTTTCAAAA
IRR : TCAGATTGAAGACAAACTAGTGCCCTTGCTAGTTTGTTTTTTATTGTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGTAAAAA | AACC(g/a)CACGCGTGTGGTT | TTTTTACATG | 18 |
CATAAAAAAA | GAGGCTAAGGCCTC | TTTTTTTATAA | 14 |
DNA sequence
TCAGAGTGAAGACAAAGTCCCTGTCTTCACTCTTTTTGATGTTTTTCAAAAGTGGCTCGGACGTAAGCGACTTCCTTCGGAATTCCATTACTCATTTTTT
AGCCCTGGTCTAAAAAATTCCGTCGTGGCTTTTCTAATTCGGAATAAGCCACTCATGCCACCGGAAAAACATCACAATCGTCATTAAAAGTGAGAGATTT
TCTCTTCTTGGGAGTATAATAATAGTAAAAATAATTGTGAGGTGCTCTCTATGTTTCACAAAGAAAATCCTAATTACAATCGCAATCAAGTCGGTTTTTA
TACCCTAGATGAGTTAGTTCCAGAAGATCATCTGCTTCGTCAAATTGACCAAGCTATTGATTTCTCTTTTATTTATGACTTAGTGACAGATAGTTATTGT
CTTGATAATGGGCGTCCTAGTTTAGATCCAGTGATGTTAGTTAAACTCCCTATTATCCAATGTCTCTTTGGTATTCGTTCTATGAGACAAACCATTAAAG
AGATAGAAGTGAATGTGGCTTACCGCTGGTTTCTTGGATTGACATTGGAAGATAAGGTCCCTCATTTTACGACTTACGGCAAGAACTACAGTCGTCGTTT
TCAAGATAAACAAGTGATTGAAGCCATCTTTTCTCATATATTAGGGCTATGCCTTAATGCTGGGCTGATTGATCCGACTGAAATTTTTGTGGATGGCACT
CATATCAAGGCAGCTGCTAACAGTCACAAATATAGCAATCAGAAAGTTGATAGACAAGCTAAGTTTATGAGTGACCAATTGGAGCTGGAAATTGCTAGGG
ACAGGGAGAAACATGAAAAAAAGTCGCTAGGGCTCGCCAAAGAAAAAGAGCCCATAAATAAGAAAGTTTCTACGACCGATTCTGAAAGTGGTTGGTATCA
TAAGGGAGAACATAAAGATGTCTTTGCTTACACAAGTCAAGTGGCATGCGATAAGAATGGTTGGGTCTTAGCCTATACTGTAGATGCAGGAAATACTCAT
GATAGTCAAGCATTTCCTGCACTTTGGAAGAAGATAAAAGAGTTCCGGCCAGACTTTATTATCGCTGATTCTGGCTACAAGACTCCTAGTATTGCCAAGT
TACTCTTGGATAATGAAGTGAGACCTGTTTTCCCCTATACTAGGCCTCGTGGTAAGAAAGGCAATTTAAGACCAAATGATTTTATTTATGACTCCTATTA
TGAGTGTTATCTTTGTCCTGAACACCAAGTATTGTCTTATACAACAACAAATCGAGCTGGCTACAGAGAATATAAAAGTGCCCCCGAAATTTGTGTTTCT
TGTCCCCTTCTAGGAATTTGTACTGACAGTAAGAATCACCAAAAGGTAGTGACCCGACATATCTGGAAAGACTACCTGGATATTTGTGAGGATATTCGGC
ATCAAAGTGATATGAAAGAACTCTATAAACAGCGCAAACAGAGTATTGAGCGGCTTTTTGGAACGGCTAAAGAATACCACAACCTTCGTTATACTAGAGA
AATTGGAAAGTCCAAAATGAAAGCTAAAGTTGGACTGACTTTAGCGTGCCTAAATCTCAAAAAATGGGTTAAAATGATGGCTGGGAAGCCTTTTTATTTT
GGCCTTAAATGCCTTATTTATCTGATTTTAGTGAAATTTAGGCGAAACAATAAAAAACAAACTAGCAAGGGCACTAGTTTGTCTTCAATCTGA
AGCCCTGGTCTAAAAAATTCCGTCGTGGCTTTTCTAATTCGGAATAAGCCACTCATGCCACCGGAAAAACATCACAATCGTCATTAAAAGTGAGAGATTT
TCTCTTCTTGGGAGTATAATAATAGTAAAAATAATTGTGAGGTGCTCTCTATGTTTCACAAAGAAAATCCTAATTACAATCGCAATCAAGTCGGTTTTTA
TACCCTAGATGAGTTAGTTCCAGAAGATCATCTGCTTCGTCAAATTGACCAAGCTATTGATTTCTCTTTTATTTATGACTTAGTGACAGATAGTTATTGT
CTTGATAATGGGCGTCCTAGTTTAGATCCAGTGATGTTAGTTAAACTCCCTATTATCCAATGTCTCTTTGGTATTCGTTCTATGAGACAAACCATTAAAG
AGATAGAAGTGAATGTGGCTTACCGCTGGTTTCTTGGATTGACATTGGAAGATAAGGTCCCTCATTTTACGACTTACGGCAAGAACTACAGTCGTCGTTT
TCAAGATAAACAAGTGATTGAAGCCATCTTTTCTCATATATTAGGGCTATGCCTTAATGCTGGGCTGATTGATCCGACTGAAATTTTTGTGGATGGCACT
CATATCAAGGCAGCTGCTAACAGTCACAAATATAGCAATCAGAAAGTTGATAGACAAGCTAAGTTTATGAGTGACCAATTGGAGCTGGAAATTGCTAGGG
ACAGGGAGAAACATGAAAAAAAGTCGCTAGGGCTCGCCAAAGAAAAAGAGCCCATAAATAAGAAAGTTTCTACGACCGATTCTGAAAGTGGTTGGTATCA
TAAGGGAGAACATAAAGATGTCTTTGCTTACACAAGTCAAGTGGCATGCGATAAGAATGGTTGGGTCTTAGCCTATACTGTAGATGCAGGAAATACTCAT
GATAGTCAAGCATTTCCTGCACTTTGGAAGAAGATAAAAGAGTTCCGGCCAGACTTTATTATCGCTGATTCTGGCTACAAGACTCCTAGTATTGCCAAGT
TACTCTTGGATAATGAAGTGAGACCTGTTTTCCCCTATACTAGGCCTCGTGGTAAGAAAGGCAATTTAAGACCAAATGATTTTATTTATGACTCCTATTA
TGAGTGTTATCTTTGTCCTGAACACCAAGTATTGTCTTATACAACAACAAATCGAGCTGGCTACAGAGAATATAAAAGTGCCCCCGAAATTTGTGTTTCT
TGTCCCCTTCTAGGAATTTGTACTGACAGTAAGAATCACCAAAAGGTAGTGACCCGACATATCTGGAAAGACTACCTGGATATTTGTGAGGATATTCGGC
ATCAAAGTGATATGAAAGAACTCTATAAACAGCGCAAACAGAGTATTGAGCGGCTTTTTGGAACGGCTAAAGAATACCACAACCTTCGTTATACTAGAGA
AATTGGAAAGTCCAAAATGAAAGCTAAAGTTGGACTGACTTTAGCGTGCCTAAATCTCAAAAAATGGGTTAAAATGATGGCTGGGAAGCCTTTTTATTTT
GGCCTTAAATGCCTTATTTATCTGATTTTAGTGAAATTTAGGCGAAACAATAAAAAACAAACTAGCAAGGGCACTAGTTTGTCTTCAATCTGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1443 bp | 480 aa | 251 | 1693 | + | No |
Chemistry : DDE
ORF sequence :
MFHKENPNYNRNQVGFYTLDELVPEDHLLRQIDQAIDFSFIYDLVTDSYCLDNGRPSLDPVMLVKLPIIQCLFGIRSMRQTIKEIEVNVAYRWFLGLTLE
DKVPHFTTYGKNYSRRFQDKQVIEAIFSHILGLCLNAGLIDPTEIFVDGTHIKAAANSHKYSNQKVDRQAKFMSDQLELEIARDREKHEKKSLGLAKEKE
PINKKVSTTDSESGWYHKGEHKDVFAYTSQVACDKNGWVLAYTVDAGNTHDSQAFPALWKKIKEFRPDFIIADSGYKTPSIAKLLLDNEVRPVFPYTRPR
GKKGNLRPNDFIYDSYYECYLCPEHQVLSYTTTNRAGYREYKSAPEICVSCPLLGICTDSKNHQKVVTRHIWKDYLDICEDIRHQSDMKELYKQRKQSIE
RLFGTAKEYHNLRYTREIGKSKMKAKVGLTLACLNLKKWVKMMAGKPFYFGLKCLIYLILVKFRRNNKKQTSKGTSLSSI
DKVPHFTTYGKNYSRRFQDKQVIEAIFSHILGLCLNAGLIDPTEIFVDGTHIKAAANSHKYSNQKVDRQAKFMSDQLELEIARDREKHEKKSLGLAKEKE
PINKKVSTTDSESGWYHKGEHKDVFAYTSQVACDKNGWVLAYTVDAGNTHDSQAFPALWKKIKEFRPDFIIADSGYKTPSIAKLLLDNEVRPVFPYTRPR
GKKGNLRPNDFIYDSYYECYLCPEHQVLSYTTTNRAGYREYKSAPEICVSCPLLGICTDSKNHQKVVTRHIWKDYLDICEDIRHQSDMKELYKQRKQSIE
RLFGTAKEYHNLRYTREIGKSKMKAKVGLTLACLNLKKWVKMMAGKPFYFGLKCLIYLILVKFRRNNKKQTSKGTSLSSI
Blast result :
Comments
ISStin3 is 88% aa similar to ISSag8.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder