ISStin2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017952 ND Streptococcus iniae
Streptococcus iniae 89353
Streptococcus iniae YSFST01-82
Streptococcus iniae ISNO
Streptococcus iniae ISET0901
Streptococcus iniae SF1
DNA section
IS Length : 1164 bp

Ends


IR Length : 21/27

IRL : CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGTTCGTCTGATATA
IRR : CGCATGTTGTCAAGTCAAGTGCAACAAGTTGATTGATAACTAGAAATCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAATAGGTagttttgaaaaaaTATAAATTTT13

DNA sequence

CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGTTCGTCTGATATACTAGAATTCCCCAACTCAGTATAGAAAGCAGATGAACATGTCCAACACTC
ATTCTACCAAAAAATCAACCTATTCTCATCTCTCAGCCTCGGAACGTGGCGAAATGGCTGCTTATCTTAAAATGGGAAAGAAACCGGCTGAAATCGCTCG
TCTTCTAGGTCGTCACCGGTCGACAATCAGTCGAGAAATCAAACGTGGTTCGGTGGATCAGGTACAGGATAAGAATGGGAAACGTACCTATTTCAGTGCC
TATTTCGCTGATAGCGGACAGCGTGTCTATGAATCCAATCGTCAAAAGTGCTCTTATCTCAAGTTGAATGACTGCTCCGCTAAATTCATTGAGCAATTAG
AATATGCCTTGAAAGCTAAAATTCGTCTCCATAGCGTAGATAGTTTCGTTCAGACTTATAAAGCAAATCATCCTGAGGAGGTTTTTCCCTCTACCAAAAC
CATTTATCGCTATATCAAAGAGGGGCTGTTAGTTATAAAACCAATCGATTTACCTAAGATGGTCAGTATCAGGAAACGTTCTAAGCCAGTCATTAAGACG
AATAAGAAAACTTTAGGTCAGTCTATCGAAGAACGTCCTGAGTGTATCAATGACCGTTCTGAATTTGGTCATTGGGAGATTGACTTGGTTCTTGGAAAGA
AAACCAAAGGTGAAGCTGTTGTTTTGACTTTGGTAGAGCGCCAGACACGCTATGCACTAGGAGTTAAGCTAGAAGATAAACAGTCCCATACCATTAATAG
TGCTGTCAAACAACTTACAAGTCAGTATCCTATTGCATCCATTACAGCTGATAATGGTTCTGAATTTAGTTTACTCTCAGACTTGGAAGCTGTTGATGTT
TACTTTGCCCATCCATATTCTTCACATGAGAGAGGTACAAATGAGAACTTCAATGGTCTCCTCAGAGAATATATCCCTAAAGGAAACTCTTTTAATTCAC
TAACCTCTGAAGAACTTGACAACTATATCACAGCCATCAATGAGCGCCCGAGACGACTTCTTCAATACCAATCTTCAAAATTCCTATTTGGGATAGCCCA
AATAGCTTAACCTCTGGATTTCTAGTTATCAATCAACTTGTTGCACTTGACTTGACAACATGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa821110+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNMSNTHSTKKSTYSHLSASERGEMAAYLKMGKKPAEIARLLGRHRSTISREIKRGSVDQVQDKNGKRTYFSAYFADSGQRVYESNRQKCSYLKLNDCSA
KFIEQLEYALKAKIRLHSVDSFVQTYKANHPEEVFPSTKTIYRYIKEGLLVIKPIDLPKMVSIRKRSKPVIKTNKKTLGQSIEERPECINDRSEFGHWEI
DLVLGKKTKGEAVVLTLVERQTRYALGVKLEDKQSHTINSAVKQLTSQYPIASITADNGSEFSLLSDLEAVDVYFAHPYSSHERGTNENFNGLLREYIPK
GNSFNSLTSEELDNYITAINERPRRLLQYQSSKFLFGIAQIA

 

Blast result :
Comments
ISStin2 is 85% aa similar to ISSag3.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder