ISStin2
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017952 | ND | Streptococcus iniae | Streptococcus iniae 89353 Streptococcus iniae YSFST01-82 Streptococcus iniae ISNO Streptococcus iniae ISET0901 Streptococcus iniae SF1 |
DNA section
IS Length : 1164 bp
Ends
IR Length : 21/27
IRL : CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGTTCGTCTGATATA
IRR : CGCATGTTGTCAAGTCAAGTGCAACAAGTTGATTGATAACTAGAAATCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAATAGGT | agttttgaaaaaa | TATAAATTTT | 13 |
DNA sequence
CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGTTCGTCTGATATACTAGAATTCCCCAACTCAGTATAGAAAGCAGATGAACATGTCCAACACTC
ATTCTACCAAAAAATCAACCTATTCTCATCTCTCAGCCTCGGAACGTGGCGAAATGGCTGCTTATCTTAAAATGGGAAAGAAACCGGCTGAAATCGCTCG
TCTTCTAGGTCGTCACCGGTCGACAATCAGTCGAGAAATCAAACGTGGTTCGGTGGATCAGGTACAGGATAAGAATGGGAAACGTACCTATTTCAGTGCC
TATTTCGCTGATAGCGGACAGCGTGTCTATGAATCCAATCGTCAAAAGTGCTCTTATCTCAAGTTGAATGACTGCTCCGCTAAATTCATTGAGCAATTAG
AATATGCCTTGAAAGCTAAAATTCGTCTCCATAGCGTAGATAGTTTCGTTCAGACTTATAAAGCAAATCATCCTGAGGAGGTTTTTCCCTCTACCAAAAC
CATTTATCGCTATATCAAAGAGGGGCTGTTAGTTATAAAACCAATCGATTTACCTAAGATGGTCAGTATCAGGAAACGTTCTAAGCCAGTCATTAAGACG
AATAAGAAAACTTTAGGTCAGTCTATCGAAGAACGTCCTGAGTGTATCAATGACCGTTCTGAATTTGGTCATTGGGAGATTGACTTGGTTCTTGGAAAGA
AAACCAAAGGTGAAGCTGTTGTTTTGACTTTGGTAGAGCGCCAGACACGCTATGCACTAGGAGTTAAGCTAGAAGATAAACAGTCCCATACCATTAATAG
TGCTGTCAAACAACTTACAAGTCAGTATCCTATTGCATCCATTACAGCTGATAATGGTTCTGAATTTAGTTTACTCTCAGACTTGGAAGCTGTTGATGTT
TACTTTGCCCATCCATATTCTTCACATGAGAGAGGTACAAATGAGAACTTCAATGGTCTCCTCAGAGAATATATCCCTAAAGGAAACTCTTTTAATTCAC
TAACCTCTGAAGAACTTGACAACTATATCACAGCCATCAATGAGCGCCCGAGACGACTTCTTCAATACCAATCTTCAAAATTCCTATTTGGGATAGCCCA
AATAGCTTAACCTCTGGATTTCTAGTTATCAATCAACTTGTTGCACTTGACTTGACAACATGCG
ATTCTACCAAAAAATCAACCTATTCTCATCTCTCAGCCTCGGAACGTGGCGAAATGGCTGCTTATCTTAAAATGGGAAAGAAACCGGCTGAAATCGCTCG
TCTTCTAGGTCGTCACCGGTCGACAATCAGTCGAGAAATCAAACGTGGTTCGGTGGATCAGGTACAGGATAAGAATGGGAAACGTACCTATTTCAGTGCC
TATTTCGCTGATAGCGGACAGCGTGTCTATGAATCCAATCGTCAAAAGTGCTCTTATCTCAAGTTGAATGACTGCTCCGCTAAATTCATTGAGCAATTAG
AATATGCCTTGAAAGCTAAAATTCGTCTCCATAGCGTAGATAGTTTCGTTCAGACTTATAAAGCAAATCATCCTGAGGAGGTTTTTCCCTCTACCAAAAC
CATTTATCGCTATATCAAAGAGGGGCTGTTAGTTATAAAACCAATCGATTTACCTAAGATGGTCAGTATCAGGAAACGTTCTAAGCCAGTCATTAAGACG
AATAAGAAAACTTTAGGTCAGTCTATCGAAGAACGTCCTGAGTGTATCAATGACCGTTCTGAATTTGGTCATTGGGAGATTGACTTGGTTCTTGGAAAGA
AAACCAAAGGTGAAGCTGTTGTTTTGACTTTGGTAGAGCGCCAGACACGCTATGCACTAGGAGTTAAGCTAGAAGATAAACAGTCCCATACCATTAATAG
TGCTGTCAAACAACTTACAAGTCAGTATCCTATTGCATCCATTACAGCTGATAATGGTTCTGAATTTAGTTTACTCTCAGACTTGGAAGCTGTTGATGTT
TACTTTGCCCATCCATATTCTTCACATGAGAGAGGTACAAATGAGAACTTCAATGGTCTCCTCAGAGAATATATCCCTAAAGGAAACTCTTTTAATTCAC
TAACCTCTGAAGAACTTGACAACTATATCACAGCCATCAATGAGCGCCCGAGACGACTTCTTCAATACCAATCTTCAAAATTCCTATTTGGGATAGCCCA
AATAGCTTAACCTCTGGATTTCTAGTTATCAATCAACTTGTTGCACTTGACTTGACAACATGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 82 | 1110 | + | No |
Chemistry : DDE
ORF sequence :
MNMSNTHSTKKSTYSHLSASERGEMAAYLKMGKKPAEIARLLGRHRSTISREIKRGSVDQVQDKNGKRTYFSAYFADSGQRVYESNRQKCSYLKLNDCSA
KFIEQLEYALKAKIRLHSVDSFVQTYKANHPEEVFPSTKTIYRYIKEGLLVIKPIDLPKMVSIRKRSKPVIKTNKKTLGQSIEERPECINDRSEFGHWEI
DLVLGKKTKGEAVVLTLVERQTRYALGVKLEDKQSHTINSAVKQLTSQYPIASITADNGSEFSLLSDLEAVDVYFAHPYSSHERGTNENFNGLLREYIPK
GNSFNSLTSEELDNYITAINERPRRLLQYQSSKFLFGIAQIA
KFIEQLEYALKAKIRLHSVDSFVQTYKANHPEEVFPSTKTIYRYIKEGLLVIKPIDLPKMVSIRKRSKPVIKTNKKTLGQSIEERPECINDRSEFGHWEI
DLVLGKKTKGEAVVLTLVERQTRYALGVKLEDKQSHTINSAVKQLTSQYPIASITADNGSEFSLLSDLEAVDVYFAHPYSSHERGTNENFNGLLREYIPK
GNSFNSLTSEELDNYITAINERPRRLLQYQSSKFLFGIAQIA
Blast result :
Comments
ISStin2 is 85% aa similar to ISSag3.
References
1] Alsheikh-Hussain A. (2017) Direct submission to ISfinder