ISBli3

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Brevibacterium linens
Brevibacterium linens OC2
Brevibacterium aurantiacum
DNA section
IS Length : 1398 bp

Ends


IR Length : 19

IRL : GGCTCTTCATAAATAGGGCGGTGCGGTAGCCACTCTCGAGCAACACAAGA
IRR : GGCTCTTCATAAATAGGGCTGTAGGAGCTGGCCCATTCCTCCGGCGTGGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTCTTCATAAATAGGGCGGTGCGGTAGCCACTCTCGAGCAACACAAGAAACGGGACCCTGGGTGCAATGATGTAGGTGTTCAAGACTCCATCACGACC
CAAGGTCCCTGATGCACAACTTTACCCCGCCCAGCCTCGACACCACACTCAGCCTGGATGAGCTCGGACTCACCGCCATCGGCCAACACCACACAGGTAG
GCACTTGACTGTGTTGTGCCTGATCACCGACGCCAACGCCGACTGTCCCGAATGCCAGCAGCCCGGTCGAGTCCGATCAACACGGATCCGCCGGCTCGTC
CATCCCCCGATCGGGCTGACAGCCGTGATCCTGGCCATCCGCATCCGCACATACGTGTGCCCCAGCTGCGATCGCCGGTGGTCGCAGTCACCGTCGAAGG
CGTGTGTGGGCCGCTCGAAGCTTTCTCGTCCCGCACGTCTATGGGCTTTGAAGTCTGTCGTGATCGACAAGATGAGCATCCACGCCATCGCGAAGAACCT
CGCGACGTCGTGGAACACAGTCTGTTCGGCAGTGCTGGATCTTGGCCGGACGTTGTTGCTCGCCGACGCGACCAGGCTCGATGGTGTCACCACGATCGGC
GTCGATGAACACTGTTGGTCCCACCGCGGACTCGACCGGTGGGTCACCGTCATCGTCGACCTCACCAACAGGCCCGCACGGTTGATCGACATCGTTCCCG
GCCGGTCCGCCGAGGTGTTCTCTGATTGGCTCAACAATCAGCCCGATGAGTTTCGGGACAGGATTGACCACGTCGCCATGGACGCCTTCGCCGGGTACAA
GAAGGCCGCGACCGAAGTAGTCCCGGACGCGGTCACGGTCATGGACCCCTTCCATGTCGTTGCTCTCGTCGGGACAAAGCTCGATGAGACAAGGAGACGA
CTCCAAACCGAGCTTCATGGGCGCAGGGGCCGGTCTGGTGACGACCTCTACGGGATTCGGAAAACGATCCGCACCCGAGTTGGCCTGCTGTCCCAGAAGC
AAAAACACCGACTCAACACGGTCTTCGCAGCCGATAATCATGCGGCTTTGGTGGTGTGTTGGCAGTTCTACCAAGACACCATCAAGGCCTACTCTGCCGC
CCCGAAGAAAGGCAAAACGATCATCGCCGGACTCATCGACAAGCTGGCAGACACGATCCCGGATGAGTTGAAGGAACTACGGAGTCTGCGAACGACGTTT
CAACGCCGGCGTGCCGATATTCTCGCCTATTTCGACCACCCCGGAACGTCGAATGGGCCCACGGAAGCAATTAACGGCAGGCTGGAACATCTGCGGGGTA
TCGCGTTGGGGTTCCGTAACCGGGGCAACTATCTCATCCGGTCGCTACTCCACGCCGGAGGAATGGGCCAGCTCCTACAGCCCTATTTATGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1121392+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MHNFTPPSLDTTLSLDELGLTAIGQHHTGRHLTVLCLITDANADCPECQQPGRVRSTRIRRLVHPPIGLTAVILAIRIRTYVCPSCDRRWSQSPSKACVG
RSKLSRPARLWALKSVVIDKMSIHAIAKNLATSWNTVCSAVLDLGRTLLLADATRLDGVTTIGVDEHCWSHRGLDRWVTVIVDLTNRPARLIDIVPGRSA
EVFSDWLNNQPDEFRDRIDHVAMDAFAGYKKAATEVVPDAVTVMDPFHVVALVGTKLDETRRRLQTELHGRRGRSGDDLYGIRKTIRTRVGLLSQKQKHR
LNTVFAADNHAALVVCWQFYQDTIKAYSAAPKKGKTIIAGLIDKLADTIPDELKELRSLRTTFQRRRADILAYFDHPGTSNGPTEAINGRLEHLRGIALG
FRNRGNYLIRSLLHAGGMGQLLQPYL

 

Blast result :
Comments
ISBli3 is 62% aa similar with ISBli1 and IS1096, 59% with IS1411, 56% with IS1207 and IS2001, 55% with IS31381 and 54% IS13869.
References
1] Aufrere., R. Direct submission. (2000)