ISBli3
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Brevibacterium linens | Brevibacterium linens OC2 Brevibacterium aurantiacum |
DNA section
IS Length : 1398 bp
Ends
IR Length : 19
IRL : GGCTCTTCATAAATAGGGCGGTGCGGTAGCCACTCTCGAGCAACACAAGA
IRR : GGCTCTTCATAAATAGGGCTGTAGGAGCTGGCCCATTCCTCCGGCGTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTTCATAAATAGGGCGGTGCGGTAGCCACTCTCGAGCAACACAAGAAACGGGACCCTGGGTGCAATGATGTAGGTGTTCAAGACTCCATCACGACC
CAAGGTCCCTGATGCACAACTTTACCCCGCCCAGCCTCGACACCACACTCAGCCTGGATGAGCTCGGACTCACCGCCATCGGCCAACACCACACAGGTAG
GCACTTGACTGTGTTGTGCCTGATCACCGACGCCAACGCCGACTGTCCCGAATGCCAGCAGCCCGGTCGAGTCCGATCAACACGGATCCGCCGGCTCGTC
CATCCCCCGATCGGGCTGACAGCCGTGATCCTGGCCATCCGCATCCGCACATACGTGTGCCCCAGCTGCGATCGCCGGTGGTCGCAGTCACCGTCGAAGG
CGTGTGTGGGCCGCTCGAAGCTTTCTCGTCCCGCACGTCTATGGGCTTTGAAGTCTGTCGTGATCGACAAGATGAGCATCCACGCCATCGCGAAGAACCT
CGCGACGTCGTGGAACACAGTCTGTTCGGCAGTGCTGGATCTTGGCCGGACGTTGTTGCTCGCCGACGCGACCAGGCTCGATGGTGTCACCACGATCGGC
GTCGATGAACACTGTTGGTCCCACCGCGGACTCGACCGGTGGGTCACCGTCATCGTCGACCTCACCAACAGGCCCGCACGGTTGATCGACATCGTTCCCG
GCCGGTCCGCCGAGGTGTTCTCTGATTGGCTCAACAATCAGCCCGATGAGTTTCGGGACAGGATTGACCACGTCGCCATGGACGCCTTCGCCGGGTACAA
GAAGGCCGCGACCGAAGTAGTCCCGGACGCGGTCACGGTCATGGACCCCTTCCATGTCGTTGCTCTCGTCGGGACAAAGCTCGATGAGACAAGGAGACGA
CTCCAAACCGAGCTTCATGGGCGCAGGGGCCGGTCTGGTGACGACCTCTACGGGATTCGGAAAACGATCCGCACCCGAGTTGGCCTGCTGTCCCAGAAGC
AAAAACACCGACTCAACACGGTCTTCGCAGCCGATAATCATGCGGCTTTGGTGGTGTGTTGGCAGTTCTACCAAGACACCATCAAGGCCTACTCTGCCGC
CCCGAAGAAAGGCAAAACGATCATCGCCGGACTCATCGACAAGCTGGCAGACACGATCCCGGATGAGTTGAAGGAACTACGGAGTCTGCGAACGACGTTT
CAACGCCGGCGTGCCGATATTCTCGCCTATTTCGACCACCCCGGAACGTCGAATGGGCCCACGGAAGCAATTAACGGCAGGCTGGAACATCTGCGGGGTA
TCGCGTTGGGGTTCCGTAACCGGGGCAACTATCTCATCCGGTCGCTACTCCACGCCGGAGGAATGGGCCAGCTCCTACAGCCCTATTTATGAAGAGCC
CAAGGTCCCTGATGCACAACTTTACCCCGCCCAGCCTCGACACCACACTCAGCCTGGATGAGCTCGGACTCACCGCCATCGGCCAACACCACACAGGTAG
GCACTTGACTGTGTTGTGCCTGATCACCGACGCCAACGCCGACTGTCCCGAATGCCAGCAGCCCGGTCGAGTCCGATCAACACGGATCCGCCGGCTCGTC
CATCCCCCGATCGGGCTGACAGCCGTGATCCTGGCCATCCGCATCCGCACATACGTGTGCCCCAGCTGCGATCGCCGGTGGTCGCAGTCACCGTCGAAGG
CGTGTGTGGGCCGCTCGAAGCTTTCTCGTCCCGCACGTCTATGGGCTTTGAAGTCTGTCGTGATCGACAAGATGAGCATCCACGCCATCGCGAAGAACCT
CGCGACGTCGTGGAACACAGTCTGTTCGGCAGTGCTGGATCTTGGCCGGACGTTGTTGCTCGCCGACGCGACCAGGCTCGATGGTGTCACCACGATCGGC
GTCGATGAACACTGTTGGTCCCACCGCGGACTCGACCGGTGGGTCACCGTCATCGTCGACCTCACCAACAGGCCCGCACGGTTGATCGACATCGTTCCCG
GCCGGTCCGCCGAGGTGTTCTCTGATTGGCTCAACAATCAGCCCGATGAGTTTCGGGACAGGATTGACCACGTCGCCATGGACGCCTTCGCCGGGTACAA
GAAGGCCGCGACCGAAGTAGTCCCGGACGCGGTCACGGTCATGGACCCCTTCCATGTCGTTGCTCTCGTCGGGACAAAGCTCGATGAGACAAGGAGACGA
CTCCAAACCGAGCTTCATGGGCGCAGGGGCCGGTCTGGTGACGACCTCTACGGGATTCGGAAAACGATCCGCACCCGAGTTGGCCTGCTGTCCCAGAAGC
AAAAACACCGACTCAACACGGTCTTCGCAGCCGATAATCATGCGGCTTTGGTGGTGTGTTGGCAGTTCTACCAAGACACCATCAAGGCCTACTCTGCCGC
CCCGAAGAAAGGCAAAACGATCATCGCCGGACTCATCGACAAGCTGGCAGACACGATCCCGGATGAGTTGAAGGAACTACGGAGTCTGCGAACGACGTTT
CAACGCCGGCGTGCCGATATTCTCGCCTATTTCGACCACCCCGGAACGTCGAATGGGCCCACGGAAGCAATTAACGGCAGGCTGGAACATCTGCGGGGTA
TCGCGTTGGGGTTCCGTAACCGGGGCAACTATCTCATCCGGTCGCTACTCCACGCCGGAGGAATGGGCCAGCTCCTACAGCCCTATTTATGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 112 | 1392 | + | No |
Chemistry : Unknow
ORF sequence :
MHNFTPPSLDTTLSLDELGLTAIGQHHTGRHLTVLCLITDANADCPECQQPGRVRSTRIRRLVHPPIGLTAVILAIRIRTYVCPSCDRRWSQSPSKACVG
RSKLSRPARLWALKSVVIDKMSIHAIAKNLATSWNTVCSAVLDLGRTLLLADATRLDGVTTIGVDEHCWSHRGLDRWVTVIVDLTNRPARLIDIVPGRSA
EVFSDWLNNQPDEFRDRIDHVAMDAFAGYKKAATEVVPDAVTVMDPFHVVALVGTKLDETRRRLQTELHGRRGRSGDDLYGIRKTIRTRVGLLSQKQKHR
LNTVFAADNHAALVVCWQFYQDTIKAYSAAPKKGKTIIAGLIDKLADTIPDELKELRSLRTTFQRRRADILAYFDHPGTSNGPTEAINGRLEHLRGIALG
FRNRGNYLIRSLLHAGGMGQLLQPYL
RSKLSRPARLWALKSVVIDKMSIHAIAKNLATSWNTVCSAVLDLGRTLLLADATRLDGVTTIGVDEHCWSHRGLDRWVTVIVDLTNRPARLIDIVPGRSA
EVFSDWLNNQPDEFRDRIDHVAMDAFAGYKKAATEVVPDAVTVMDPFHVVALVGTKLDETRRRLQTELHGRRGRSGDDLYGIRKTIRTRVGLLSQKQKHR
LNTVFAADNHAALVVCWQFYQDTIKAYSAAPKKGKTIIAGLIDKLADTIPDELKELRSLRTTFQRRRADILAYFDHPGTSNGPTEAINGRLEHLRGIALG
FRNRGNYLIRSLLHAGGMGQLLQPYL
Blast result :
Comments
ISBli3 is 62% aa similar with ISBli1 and IS1096, 59% with IS1411, 56% with IS1207 and IS2001, 55% with IS31381 and 54% IS13869.
References
1] Aufrere., R. Direct submission. (2000)