ISVasp5
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT607803 | ND | Variovorax sp. | Variovorax sp. HW608 |
DNA section
IS Length : 1105 bp
Ends
IR Length : 22/23
IRL : ATGGGCTATCCATTTAACCGGAGCTAGGCGCATACTGCCGCGATGGAGCT
IRR : CTGGGCTATCCATTTAACCGGAGTTGTGCCGCCACGGCCGGTGCTGCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATCGCGATA | AGTCTTCT | TATCGCAATA | 8 |
DNA sequence
ATGGGCTATCCATTTAACCGGAGCTAGGCGCATACTGCCGCGATGGAGCTTCCAAGCGCAGGCATTCACTATCCCGGCTCCCTCGGCGAGTTCCAGGCGT
GGTTTCAGTCCGACGCCGACTGCTTGGACTATCTGGAGTGGCTGCGTTGGCCATCGGGGTTTGTCTGCCCGGCATGCGATCACGCCGGTGGATGGCGGCT
GGGAGACGGAAGATTCATGTGCGCGGACTGTGGCGACCGCACGTCCGTGACGGCGGGGACCATCTTCGACCGAACCCGTACGCCGCTCACGGTCTGGTTC
GCGGCCTGTTGGCACTTCGCCTGCGGCAAAGACGGCATCTCGGCCTTGAGTCTGAAGCGCACCTTGGAGATCGGCTCGTACCAGACGGCCTGGGCCATGC
TGCACCGGTTGCGATCGGTCCTGGTTCGTCCCGATCGGGAACTCCTGCGGGGCAAGGTAGAAGTGGACGAAACCTACATCGGTGGGCTCGATCCTGGGTT
GCCTGGCGGGCGTGCGCAGGGGAAGAAGATTCTGACTTGCGTCGCAGTCGAGATCCTGGAGCCCAAGGGATTCGGCCGCTGTCGCATGGCGCCCGTCGCC
GATGGTTCGGCGCAGTCGCTGCTGGGCTTCGTGTCGGCGAACGTTGAGCCGGGGGCAACGGTGATCACCGATGCCTGGCAGAGCTACCGAGGATTGGAGA
AGAAGGGCTACGTCCATGACCGTCGCAGCCAGCGGGCCGCCAGCGCACGCGGTGAAGACCCTGGTGCGCTACTGCCAGCTGTGCATCGGATCGCGTCCCT
GGCAAAACGCTGGCTGCTCGGCACCCACCAAGGAGCGGTGGAAGCCGCGCACCTACCCAGCTACCTCAACGAGTTCGTCTTCCGCTTCAACCGCCGCCGC
TCGCGCAGCCGCGGGATGCTGTTCTACAGGGTCATGGAACTCGCCGTCGCACATGACCCTGTCCGATACAAGGACCTCGTGCGGACCAAGGGCCCCAAAG
CCAAGAAGCCCAAGCCGCCGGGCAAACGCGGGCATCCGCCAAGCCTGGAGCGCCCTCGGCAGCACCGGCCGTGGCGGCACAACTCCGGTTAAATGGATAG
CCCAG
GGTTTCAGTCCGACGCCGACTGCTTGGACTATCTGGAGTGGCTGCGTTGGCCATCGGGGTTTGTCTGCCCGGCATGCGATCACGCCGGTGGATGGCGGCT
GGGAGACGGAAGATTCATGTGCGCGGACTGTGGCGACCGCACGTCCGTGACGGCGGGGACCATCTTCGACCGAACCCGTACGCCGCTCACGGTCTGGTTC
GCGGCCTGTTGGCACTTCGCCTGCGGCAAAGACGGCATCTCGGCCTTGAGTCTGAAGCGCACCTTGGAGATCGGCTCGTACCAGACGGCCTGGGCCATGC
TGCACCGGTTGCGATCGGTCCTGGTTCGTCCCGATCGGGAACTCCTGCGGGGCAAGGTAGAAGTGGACGAAACCTACATCGGTGGGCTCGATCCTGGGTT
GCCTGGCGGGCGTGCGCAGGGGAAGAAGATTCTGACTTGCGTCGCAGTCGAGATCCTGGAGCCCAAGGGATTCGGCCGCTGTCGCATGGCGCCCGTCGCC
GATGGTTCGGCGCAGTCGCTGCTGGGCTTCGTGTCGGCGAACGTTGAGCCGGGGGCAACGGTGATCACCGATGCCTGGCAGAGCTACCGAGGATTGGAGA
AGAAGGGCTACGTCCATGACCGTCGCAGCCAGCGGGCCGCCAGCGCACGCGGTGAAGACCCTGGTGCGCTACTGCCAGCTGTGCATCGGATCGCGTCCCT
GGCAAAACGCTGGCTGCTCGGCACCCACCAAGGAGCGGTGGAAGCCGCGCACCTACCCAGCTACCTCAACGAGTTCGTCTTCCGCTTCAACCGCCGCCGC
TCGCGCAGCCGCGGGATGCTGTTCTACAGGGTCATGGAACTCGCCGTCGCACATGACCCTGTCCGATACAAGGACCTCGTGCGGACCAAGGGCCCCAAAG
CCAAGAAGCCCAAGCCGCCGGGCAAACGCGGGCATCCGCCAAGCCTGGAGCGCCCTCGGCAGCACCGGCCGTGGCGGCACAACTCCGGTTAAATGGATAG
CCCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 43 | 1092 | + | No |
Chemistry : DDE
ORF sequence :
MELPSAGIHYPGSLGEFQAWFQSDADCLDYLEWLRWPSGFVCPACDHAGGWRLGDGRFMCADCGDRTSVTAGTIFDRTRTPLTVWFAACWHFACGKDGIS
ALSLKRTLEIGSYQTAWAMLHRLRSVLVRPDRELLRGKVEVDETYIGGLDPGLPGGRAQGKKILTCVAVEILEPKGFGRCRMAPVADGSAQSLLGFVSAN
VEPGATVITDAWQSYRGLEKKGYVHDRRSQRAASARGEDPGALLPAVHRIASLAKRWLLGTHQGAVEAAHLPSYLNEFVFRFNRRRSRSRGMLFYRVMEL
AVAHDPVRYKDLVRTKGPKAKKPKPPGKRGHPPSLERPRQHRPWRHNSG
ALSLKRTLEIGSYQTAWAMLHRLRSVLVRPDRELLRGKVEVDETYIGGLDPGLPGGRAQGKKILTCVAVEILEPKGFGRCRMAPVADGSAQSLLGFVSAN
VEPGATVITDAWQSYRGLEKKGYVHDRRSQRAASARGEDPGALLPAVHRIASLAKRWLLGTHQGAVEAAHLPSYLNEFVFRFNRRRSRSRGMLFYRVMEL
AVAHDPVRYKDLVRTKGPKAKKPKPPGKRGHPPSLERPRQHRPWRHNSG
Blast result :
Comments
ISVasp5 is 65% aa similar to ISCARN11.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.