ISVasp5

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT607803 ND Variovorax sp.
Variovorax sp. HW608
DNA section
IS Length : 1105 bp

Ends


IR Length : 22/23

IRL : ATGGGCTATCCATTTAACCGGAGCTAGGCGCATACTGCCGCGATGGAGCT
IRR : CTGGGCTATCCATTTAACCGGAGTTGTGCCGCCACGGCCGGTGCTGCCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CATCGCGATAAGTCTTCTTATCGCAATA8

DNA sequence

ATGGGCTATCCATTTAACCGGAGCTAGGCGCATACTGCCGCGATGGAGCTTCCAAGCGCAGGCATTCACTATCCCGGCTCCCTCGGCGAGTTCCAGGCGT
GGTTTCAGTCCGACGCCGACTGCTTGGACTATCTGGAGTGGCTGCGTTGGCCATCGGGGTTTGTCTGCCCGGCATGCGATCACGCCGGTGGATGGCGGCT
GGGAGACGGAAGATTCATGTGCGCGGACTGTGGCGACCGCACGTCCGTGACGGCGGGGACCATCTTCGACCGAACCCGTACGCCGCTCACGGTCTGGTTC
GCGGCCTGTTGGCACTTCGCCTGCGGCAAAGACGGCATCTCGGCCTTGAGTCTGAAGCGCACCTTGGAGATCGGCTCGTACCAGACGGCCTGGGCCATGC
TGCACCGGTTGCGATCGGTCCTGGTTCGTCCCGATCGGGAACTCCTGCGGGGCAAGGTAGAAGTGGACGAAACCTACATCGGTGGGCTCGATCCTGGGTT
GCCTGGCGGGCGTGCGCAGGGGAAGAAGATTCTGACTTGCGTCGCAGTCGAGATCCTGGAGCCCAAGGGATTCGGCCGCTGTCGCATGGCGCCCGTCGCC
GATGGTTCGGCGCAGTCGCTGCTGGGCTTCGTGTCGGCGAACGTTGAGCCGGGGGCAACGGTGATCACCGATGCCTGGCAGAGCTACCGAGGATTGGAGA
AGAAGGGCTACGTCCATGACCGTCGCAGCCAGCGGGCCGCCAGCGCACGCGGTGAAGACCCTGGTGCGCTACTGCCAGCTGTGCATCGGATCGCGTCCCT
GGCAAAACGCTGGCTGCTCGGCACCCACCAAGGAGCGGTGGAAGCCGCGCACCTACCCAGCTACCTCAACGAGTTCGTCTTCCGCTTCAACCGCCGCCGC
TCGCGCAGCCGCGGGATGCTGTTCTACAGGGTCATGGAACTCGCCGTCGCACATGACCCTGTCCGATACAAGGACCTCGTGCGGACCAAGGGCCCCAAAG
CCAAGAAGCCCAAGCCGCCGGGCAAACGCGGGCATCCGCCAAGCCTGGAGCGCCCTCGGCAGCACCGGCCGTGGCGGCACAACTCCGGTTAAATGGATAG
CCCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1050 bp349 aa431092+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELPSAGIHYPGSLGEFQAWFQSDADCLDYLEWLRWPSGFVCPACDHAGGWRLGDGRFMCADCGDRTSVTAGTIFDRTRTPLTVWFAACWHFACGKDGIS
ALSLKRTLEIGSYQTAWAMLHRLRSVLVRPDRELLRGKVEVDETYIGGLDPGLPGGRAQGKKILTCVAVEILEPKGFGRCRMAPVADGSAQSLLGFVSAN
VEPGATVITDAWQSYRGLEKKGYVHDRRSQRAASARGEDPGALLPAVHRIASLAKRWLLGTHQGAVEAAHLPSYLNEFVFRFNRRRSRSRGMLFYRVMEL
AVAHDPVRYKDLVRTKGPKAKKPKPPGKRGHPPSLERPRQHRPWRHNSG

 

Blast result :
Comments
ISVasp5 is 65% aa similar to ISCARN11.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.