ISBli2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF195203 | Y | Brevibacterium linens | Brevibacterium linens OC2 Brevibacterium aurantiacum |
DNA section
IS Length : 1467 bp
Ends
IR Length : 15/22
IRL : GGGTGAGTCCCATAGAGTGGTGGCATTCCCACCAGGGACTTCACCCCCAA
IRR : GGTCAAGTCCCTTTTCGTGGTGTTCTTCGGTAGTTCCTTTAACTTGGTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGTGAGTCCCATAGAGTGGTGGCATTCCCACCAGGGACTTCACCCCCAAAAATGTGAAGAACCATCGTGGGATCCCGCTAGTAGTTCCGCCAAGAACCT
CACGAAAGGCATCCCACGATGGCTGACCCCAATTCTGCCGTGTCGACCCTGATCAACCAAGTCCTGACCGACCCTGACCTCGCCCACTCCGACGTGTTTA
GGCAAATGCTCCAAGCTGGCCTCCAGGACCTCATCGAAGCCGAAGCCACCGCCACGATCGGTGCCGCCCGCTACGAACGCAGCGAAGACCGTTCAACACG
CCGTAACGGGTCGCGGAAGAAGACCCTGGCAACTCCCTCGGGAGAAGTCGACCTGGCGATCCCGAAGCTACGGAAAGGCTCGTTCTTCCCGTCCCTGCTC
AATCCCCGTCGGCGGGTCGATAAGGCCCTCTACGCCGTCATCTGCCAGGCCTGGATCGACGGAGTCTCGACGAGGAAGGTCGATGACCTTGTGCGTGCTT
TGGGCAACGAGTCCGGGATCTCTCGGTCGACGGTGTCGCGGATCTGTGCCGACATCGACGAAGCAGTGGCCGAGTTCCTGGCCCGTCGACTCGATCACAC
GTGGTTTCCCTACCTCTTCGTCGACGCCACCTATGTCGATGTCCGCCACCGGGGTCGTGTCGTGTCTCAGGCCGTGGCTGTGGTCACGGGTGTCTCATCA
CAGGGCAGGCGGGAGATCCTGACCATGAGTGTCGGAGATGCCGAGTCCACGGACTTCTGGACACAGGTCCTGCGTGGGCTGCGTGAGCGGGGGTTGAAGG
TGAGCACCGAGACTGATCCCGAAGGGGTCGCGCTGGTGATCTCTGATGCTCATTCGGGGATCAAGGCCGCGGTCAAAGCGATCCTGCCCGGTGCTGGGTG
GCAGCGGTGTCGAGTCCACTTCGCTCGTAACGTCACTCAGCGCCTTGGCAGTGCGCACTCGAAGCCGGTCAACGCGTTGATCTCAAGGATTTTCGCCCAG
ACCACAGCCGAGGCCGTCATTGCCCAGTACAAGCAAGTCGCTGAGAGTGTGCGGGCGTCGTTTCCCGACATCGCCGACATGCTTGAGTCCGCCGAGGTCG
ATTTGACGGCGTTAGTGTCCATGCCCAGGCAGCATTGGCAGAAGATCTGGTCGAATAACCCGATCGAGCGGTTGAACAGGGAGATCAAACGCCGTGCTGA
TGTCGTTCAGATCTTTCCGAACCGGGAGTCGGTGACTCGGTTGATCGGGGCCGTGTTGCAGGAACAGCACGAGGAATGGCAGTACGGTGAGAGACGCTAT
TTGTCGGAGATCTCGATGCGCAAACTCGTGACGGTGTTGCATGGGCAGACCGAGGTCGACCCGGTCGGGGTGGTGATGCCGCTGACCGCGTGATTCGTAG
CCCGACCCCGCTGCTTAATACCAAGTTAAAGGAACTACCGAAGAACACCACGAAAAGGGACTTGACC
CACGAAAGGCATCCCACGATGGCTGACCCCAATTCTGCCGTGTCGACCCTGATCAACCAAGTCCTGACCGACCCTGACCTCGCCCACTCCGACGTGTTTA
GGCAAATGCTCCAAGCTGGCCTCCAGGACCTCATCGAAGCCGAAGCCACCGCCACGATCGGTGCCGCCCGCTACGAACGCAGCGAAGACCGTTCAACACG
CCGTAACGGGTCGCGGAAGAAGACCCTGGCAACTCCCTCGGGAGAAGTCGACCTGGCGATCCCGAAGCTACGGAAAGGCTCGTTCTTCCCGTCCCTGCTC
AATCCCCGTCGGCGGGTCGATAAGGCCCTCTACGCCGTCATCTGCCAGGCCTGGATCGACGGAGTCTCGACGAGGAAGGTCGATGACCTTGTGCGTGCTT
TGGGCAACGAGTCCGGGATCTCTCGGTCGACGGTGTCGCGGATCTGTGCCGACATCGACGAAGCAGTGGCCGAGTTCCTGGCCCGTCGACTCGATCACAC
GTGGTTTCCCTACCTCTTCGTCGACGCCACCTATGTCGATGTCCGCCACCGGGGTCGTGTCGTGTCTCAGGCCGTGGCTGTGGTCACGGGTGTCTCATCA
CAGGGCAGGCGGGAGATCCTGACCATGAGTGTCGGAGATGCCGAGTCCACGGACTTCTGGACACAGGTCCTGCGTGGGCTGCGTGAGCGGGGGTTGAAGG
TGAGCACCGAGACTGATCCCGAAGGGGTCGCGCTGGTGATCTCTGATGCTCATTCGGGGATCAAGGCCGCGGTCAAAGCGATCCTGCCCGGTGCTGGGTG
GCAGCGGTGTCGAGTCCACTTCGCTCGTAACGTCACTCAGCGCCTTGGCAGTGCGCACTCGAAGCCGGTCAACGCGTTGATCTCAAGGATTTTCGCCCAG
ACCACAGCCGAGGCCGTCATTGCCCAGTACAAGCAAGTCGCTGAGAGTGTGCGGGCGTCGTTTCCCGACATCGCCGACATGCTTGAGTCCGCCGAGGTCG
ATTTGACGGCGTTAGTGTCCATGCCCAGGCAGCATTGGCAGAAGATCTGGTCGAATAACCCGATCGAGCGGTTGAACAGGGAGATCAAACGCCGTGCTGA
TGTCGTTCAGATCTTTCCGAACCGGGAGTCGGTGACTCGGTTGATCGGGGCCGTGTTGCAGGAACAGCACGAGGAATGGCAGTACGGTGAGAGACGCTAT
TTGTCGGAGATCTCGATGCGCAAACTCGTGACGGTGTTGCATGGGCAGACCGAGGTCGACCCGGTCGGGGTGGTGATGCCGCTGACCGCGTGATTCGTAG
CCCGACCCCGCTGCTTAATACCAAGTTAAAGGAACTACCGAAGAACACCACGAAAAGGGACTTGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 119 | 1393 | + | No |
Chemistry : DDE
ORF sequence :
MADPNSAVSTLINQVLTDPDLAHSDVFRQMLQAGLQDLIEAEATATIGAARYERSEDRSTRRNGSRKKTLATPSGEVDLAIPKLRKGSFFPSLLNPRRRV
DKALYAVICQAWIDGVSTRKVDDLVRALGNESGISRSTVSRICADIDEAVAEFLARRLDHTWFPYLFVDATYVDVRHRGRVVSQAVAVVTGVSSQGRREI
LTMSVGDAESTDFWTQVLRGLRERGLKVSTETDPEGVALVISDAHSGIKAAVKAILPGAGWQRCRVHFARNVTQRLGSAHSKPVNALISRIFAQTTAEAV
IAQYKQVAESVRASFPDIADMLESAEVDLTALVSMPRQHWQKIWSNNPIERLNREIKRRADVVQIFPNRESVTRLIGAVLQEQHEEWQYGERRYLSEISM
RKLVTVLHGQTEVDPVGVVMPLTA
DKALYAVICQAWIDGVSTRKVDDLVRALGNESGISRSTVSRICADIDEAVAEFLARRLDHTWFPYLFVDATYVDVRHRGRVVSQAVAVVTGVSSQGRREI
LTMSVGDAESTDFWTQVLRGLRERGLKVSTETDPEGVALVISDAHSGIKAAVKAILPGAGWQRCRVHFARNVTQRLGSAHSKPVNALISRIFAQTTAEAV
IAQYKQVAESVRASFPDIADMLESAEVDLTALVSMPRQHWQKIWSNNPIERLNREIKRRADVVQIFPNRESVTRLIGAVLQEQHEEWQYGERRYLSEISM
RKLVTVLHGQTEVDPVGVVMPLTA
Blast result :
Comments
ISBli2 is 68% to IS1245, 66% to IS1311 and 60% to IS1512.
References
1] Aufrere,R. and Henckes,G. (1999) Direct Submission