ISBli2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF195203 Y Brevibacterium linens
Brevibacterium linens OC2
Brevibacterium aurantiacum
DNA section
IS Length : 1467 bp

Ends


IR Length : 15/22

IRL : GGGTGAGTCCCATAGAGTGGTGGCATTCCCACCAGGGACTTCACCCCCAA
IRR : GGTCAAGTCCCTTTTCGTGGTGTTCTTCGGTAGTTCCTTTAACTTGGTAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGTGAGTCCCATAGAGTGGTGGCATTCCCACCAGGGACTTCACCCCCAAAAATGTGAAGAACCATCGTGGGATCCCGCTAGTAGTTCCGCCAAGAACCT
CACGAAAGGCATCCCACGATGGCTGACCCCAATTCTGCCGTGTCGACCCTGATCAACCAAGTCCTGACCGACCCTGACCTCGCCCACTCCGACGTGTTTA
GGCAAATGCTCCAAGCTGGCCTCCAGGACCTCATCGAAGCCGAAGCCACCGCCACGATCGGTGCCGCCCGCTACGAACGCAGCGAAGACCGTTCAACACG
CCGTAACGGGTCGCGGAAGAAGACCCTGGCAACTCCCTCGGGAGAAGTCGACCTGGCGATCCCGAAGCTACGGAAAGGCTCGTTCTTCCCGTCCCTGCTC
AATCCCCGTCGGCGGGTCGATAAGGCCCTCTACGCCGTCATCTGCCAGGCCTGGATCGACGGAGTCTCGACGAGGAAGGTCGATGACCTTGTGCGTGCTT
TGGGCAACGAGTCCGGGATCTCTCGGTCGACGGTGTCGCGGATCTGTGCCGACATCGACGAAGCAGTGGCCGAGTTCCTGGCCCGTCGACTCGATCACAC
GTGGTTTCCCTACCTCTTCGTCGACGCCACCTATGTCGATGTCCGCCACCGGGGTCGTGTCGTGTCTCAGGCCGTGGCTGTGGTCACGGGTGTCTCATCA
CAGGGCAGGCGGGAGATCCTGACCATGAGTGTCGGAGATGCCGAGTCCACGGACTTCTGGACACAGGTCCTGCGTGGGCTGCGTGAGCGGGGGTTGAAGG
TGAGCACCGAGACTGATCCCGAAGGGGTCGCGCTGGTGATCTCTGATGCTCATTCGGGGATCAAGGCCGCGGTCAAAGCGATCCTGCCCGGTGCTGGGTG
GCAGCGGTGTCGAGTCCACTTCGCTCGTAACGTCACTCAGCGCCTTGGCAGTGCGCACTCGAAGCCGGTCAACGCGTTGATCTCAAGGATTTTCGCCCAG
ACCACAGCCGAGGCCGTCATTGCCCAGTACAAGCAAGTCGCTGAGAGTGTGCGGGCGTCGTTTCCCGACATCGCCGACATGCTTGAGTCCGCCGAGGTCG
ATTTGACGGCGTTAGTGTCCATGCCCAGGCAGCATTGGCAGAAGATCTGGTCGAATAACCCGATCGAGCGGTTGAACAGGGAGATCAAACGCCGTGCTGA
TGTCGTTCAGATCTTTCCGAACCGGGAGTCGGTGACTCGGTTGATCGGGGCCGTGTTGCAGGAACAGCACGAGGAATGGCAGTACGGTGAGAGACGCTAT
TTGTCGGAGATCTCGATGCGCAAACTCGTGACGGTGTTGCATGGGCAGACCGAGGTCGACCCGGTCGGGGTGGTGATGCCGCTGACCGCGTGATTCGTAG
CCCGACCCCGCTGCTTAATACCAAGTTAAAGGAACTACCGAAGAACACCACGAAAAGGGACTTGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1191393+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MADPNSAVSTLINQVLTDPDLAHSDVFRQMLQAGLQDLIEAEATATIGAARYERSEDRSTRRNGSRKKTLATPSGEVDLAIPKLRKGSFFPSLLNPRRRV
DKALYAVICQAWIDGVSTRKVDDLVRALGNESGISRSTVSRICADIDEAVAEFLARRLDHTWFPYLFVDATYVDVRHRGRVVSQAVAVVTGVSSQGRREI
LTMSVGDAESTDFWTQVLRGLRERGLKVSTETDPEGVALVISDAHSGIKAAVKAILPGAGWQRCRVHFARNVTQRLGSAHSKPVNALISRIFAQTTAEAV
IAQYKQVAESVRASFPDIADMLESAEVDLTALVSMPRQHWQKIWSNNPIERLNREIKRRADVVQIFPNRESVTRLIGAVLQEQHEEWQYGERRYLSEISM
RKLVTVLHGQTEVDPVGVVMPLTA

 

Blast result :
Comments
ISBli2 is 68% to IS1245, 66% to IS1311 and 60% to IS1512.
References
1] Aufrere,R. and Henckes,G. (1999) Direct Submission