ISDssp7
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR695877 | ND | Desulfobacterium sp. | Desulfobacterium sp. Uncultured Desulfobacterium sp. |
DNA section
IS Length : 1280 bp
Ends
IR Length : 22/24
IRL : TATGCTTATCCGGTTGACACATACAGATCGAAGAGGTAGACTTCCATCCT
IRR : CATGCTTATCCGGTTGGCACATACGCGCCGCCCCTCCCTCTGCTTGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCTGGAATA | GAAGGAAC | TTCGGCCCCA | 8 |
CACCGTCAAA | GAATATAC | TAATGGTTGC | 8 |
DNA sequence
TATGCTTATCCGGTTGACACATACAGATCGAAGAGGTAGACTTCCATCCTGCAGAACTGACAGTGGTGCGAGATTGGGTCGTCCACAGATGCAGAGGGAG
ACTGCTGATGCGCAAAATCAAAGAGAAGCCCTACGTCACCAACCTTCTGGAGTTCCAGCGGGCGTTCCCGGACGAGCAAGCCTGCCTCGACTACTTGGAG
CTGGTGCGTTGGCCTGACGGGTTTACGTGTCCGAAGTGTGACGTCCTCGACGAACCTTACTATATCTCGACCCGACCTCGCGTGCTCGTTTGCCGTTCTT
GCCGAGCAGAGACGTCTCTCACGGCTGGCACGATCATGCACAGGACGAAGACGTCCCTTCAGGTCTGGTTCTGGGCCGCGTACCTCGTCACAAGTCAAAC
ACCGGGCATGTCGGCGCTTCAGTTTAAGCGGCAGCTCGGGCTGACCCGATACGAGACAGCGTTCCAGATGCTCCACAAGCTGCGCGTTGCTATGGTCAGG
CCGAGCCGAAGCAAGATAGGCGAGGGCGAAGACGTGGACGGCAACCTACAATGCTATTCCGTCGAGTTGGACGAAACCTACGTCGGTGGCCGAACACGAG
GCAAGGGGCGCGGTGTCACCGAGAAGGTCGTCGCCGTCGGAGCTGTCGAGGTTCGTATCAGCGAGAAGGAAGACCTTGTCGACGGAGAGTACAAGAAGCG
TCGCTATGCAGGGCGGTTACGTATGCGGCTGATCCCGAACCGCGGAAAGGTTGCCCTGACCAAGTTCGCCACCGAGAACATCAAGACTGGTACGACGGTC
ATGACAGACGACTGGGTGGGGTATGTCGACTTGTGGAAGTGGTTCGACCACGAGGTTGTAATGCCTGACGTCGAGGCAGAAGGGATGACGAAATCGGAAC
TGCAAGCCGAGAAGGGCGAGCAGATACCACTGATCCACTTGGTGTTCTCGAACTTGAAAACGTGGATACAGGGCACGCACCACGGAGTGAGCCCGAAGCA
TCTTCAAGCGTATTTGAACGAGTACGTGTTCCGGTTCAACCGGCGCTTCTACCCGATGAGCGGGTTTCACTCGGTGTTGGGCATCGCGATGGAGGTCGAG
GGGTCGGAGTACAAAGATCTTTACGGGGACGTATGGGAGCACCCGAACGCGGAAGAACTGTGGGATTTTGATTCGGATTGACAGGCAGACAACGCACCGT
CATTCGCACTGCTCCGAACGTGAGCATCCGGCTCCAAGCAGAGGGAGGGGCGGCGCGTATGTGCCAACCGGATAAGCATG
ACTGCTGATGCGCAAAATCAAAGAGAAGCCCTACGTCACCAACCTTCTGGAGTTCCAGCGGGCGTTCCCGGACGAGCAAGCCTGCCTCGACTACTTGGAG
CTGGTGCGTTGGCCTGACGGGTTTACGTGTCCGAAGTGTGACGTCCTCGACGAACCTTACTATATCTCGACCCGACCTCGCGTGCTCGTTTGCCGTTCTT
GCCGAGCAGAGACGTCTCTCACGGCTGGCACGATCATGCACAGGACGAAGACGTCCCTTCAGGTCTGGTTCTGGGCCGCGTACCTCGTCACAAGTCAAAC
ACCGGGCATGTCGGCGCTTCAGTTTAAGCGGCAGCTCGGGCTGACCCGATACGAGACAGCGTTCCAGATGCTCCACAAGCTGCGCGTTGCTATGGTCAGG
CCGAGCCGAAGCAAGATAGGCGAGGGCGAAGACGTGGACGGCAACCTACAATGCTATTCCGTCGAGTTGGACGAAACCTACGTCGGTGGCCGAACACGAG
GCAAGGGGCGCGGTGTCACCGAGAAGGTCGTCGCCGTCGGAGCTGTCGAGGTTCGTATCAGCGAGAAGGAAGACCTTGTCGACGGAGAGTACAAGAAGCG
TCGCTATGCAGGGCGGTTACGTATGCGGCTGATCCCGAACCGCGGAAAGGTTGCCCTGACCAAGTTCGCCACCGAGAACATCAAGACTGGTACGACGGTC
ATGACAGACGACTGGGTGGGGTATGTCGACTTGTGGAAGTGGTTCGACCACGAGGTTGTAATGCCTGACGTCGAGGCAGAAGGGATGACGAAATCGGAAC
TGCAAGCCGAGAAGGGCGAGCAGATACCACTGATCCACTTGGTGTTCTCGAACTTGAAAACGTGGATACAGGGCACGCACCACGGAGTGAGCCCGAAGCA
TCTTCAAGCGTATTTGAACGAGTACGTGTTCCGGTTCAACCGGCGCTTCTACCCGATGAGCGGGTTTCACTCGGTGTTGGGCATCGCGATGGAGGTCGAG
GGGTCGGAGTACAAAGATCTTTACGGGGACGTATGGGAGCACCCGAACGCGGAAGAACTGTGGGATTTTGATTCGGATTGACAGGCAGACAACGCACCGT
CATTCGCACTGCTCCGAACGTGAGCATCCGGCTCCAAGCAGAGGGAGGGGCGGCGCGTATGTGCCAACCGGATAAGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1116 bp | 371 aa | 66 | 1181 | + | No |
Chemistry : DDE
ORF sequence :
MRDWVVHRCRGRLLMRKIKEKPYVTNLLEFQRAFPDEQACLDYLELVRWPDGFTCPKCDVLDEPYYISTRPRVLVCRSCRAETSLTAGTIMHRTKTSLQV
WFWAAYLVTSQTPGMSALQFKRQLGLTRYETAFQMLHKLRVAMVRPSRSKIGEGEDVDGNLQCYSVELDETYVGGRTRGKGRGVTEKVVAVGAVEVRISE
KEDLVDGEYKKRRYAGRLRMRLIPNRGKVALTKFATENIKTGTTVMTDDWVGYVDLWKWFDHEVVMPDVEAEGMTKSELQAEKGEQIPLIHLVFSNLKTW
IQGTHHGVSPKHLQAYLNEYVFRFNRRFYPMSGFHSVLGIAMEVEGSEYKDLYGDVWEHPNAEELWDFDSD
WFWAAYLVTSQTPGMSALQFKRQLGLTRYETAFQMLHKLRVAMVRPSRSKIGEGEDVDGNLQCYSVELDETYVGGRTRGKGRGVTEKVVAVGAVEVRISE
KEDLVDGEYKKRRYAGRLRMRLIPNRGKVALTKFATENIKTGTTVMTDDWVGYVDLWKWFDHEVVMPDVEAEGMTKSELQAEKGEQIPLIHLVFSNLKTW
IQGTHHGVSPKHLQAYLNEYVFRFNRRFYPMSGFHSVLGIAMEVEGSEYKDLYGDVWEHPNAEELWDFDSD
Blast result :
Comments
ISDssp7 is 65% aa similar to ISCARN100.
References
1] ISfinder annotation (2017)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.