ISDssp7

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695877 ND Desulfobacterium sp.
Desulfobacterium sp.
Uncultured Desulfobacterium sp.
DNA section
IS Length : 1280 bp

Ends


IR Length : 22/24

IRL : TATGCTTATCCGGTTGACACATACAGATCGAAGAGGTAGACTTCCATCCT
IRR : CATGCTTATCCGGTTGGCACATACGCGCCGCCCCTCCCTCTGCTTGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTGGAATAGAAGGAACTTCGGCCCCA8
CACCGTCAAAGAATATACTAATGGTTGC8

DNA sequence

TATGCTTATCCGGTTGACACATACAGATCGAAGAGGTAGACTTCCATCCTGCAGAACTGACAGTGGTGCGAGATTGGGTCGTCCACAGATGCAGAGGGAG
ACTGCTGATGCGCAAAATCAAAGAGAAGCCCTACGTCACCAACCTTCTGGAGTTCCAGCGGGCGTTCCCGGACGAGCAAGCCTGCCTCGACTACTTGGAG
CTGGTGCGTTGGCCTGACGGGTTTACGTGTCCGAAGTGTGACGTCCTCGACGAACCTTACTATATCTCGACCCGACCTCGCGTGCTCGTTTGCCGTTCTT
GCCGAGCAGAGACGTCTCTCACGGCTGGCACGATCATGCACAGGACGAAGACGTCCCTTCAGGTCTGGTTCTGGGCCGCGTACCTCGTCACAAGTCAAAC
ACCGGGCATGTCGGCGCTTCAGTTTAAGCGGCAGCTCGGGCTGACCCGATACGAGACAGCGTTCCAGATGCTCCACAAGCTGCGCGTTGCTATGGTCAGG
CCGAGCCGAAGCAAGATAGGCGAGGGCGAAGACGTGGACGGCAACCTACAATGCTATTCCGTCGAGTTGGACGAAACCTACGTCGGTGGCCGAACACGAG
GCAAGGGGCGCGGTGTCACCGAGAAGGTCGTCGCCGTCGGAGCTGTCGAGGTTCGTATCAGCGAGAAGGAAGACCTTGTCGACGGAGAGTACAAGAAGCG
TCGCTATGCAGGGCGGTTACGTATGCGGCTGATCCCGAACCGCGGAAAGGTTGCCCTGACCAAGTTCGCCACCGAGAACATCAAGACTGGTACGACGGTC
ATGACAGACGACTGGGTGGGGTATGTCGACTTGTGGAAGTGGTTCGACCACGAGGTTGTAATGCCTGACGTCGAGGCAGAAGGGATGACGAAATCGGAAC
TGCAAGCCGAGAAGGGCGAGCAGATACCACTGATCCACTTGGTGTTCTCGAACTTGAAAACGTGGATACAGGGCACGCACCACGGAGTGAGCCCGAAGCA
TCTTCAAGCGTATTTGAACGAGTACGTGTTCCGGTTCAACCGGCGCTTCTACCCGATGAGCGGGTTTCACTCGGTGTTGGGCATCGCGATGGAGGTCGAG
GGGTCGGAGTACAAAGATCTTTACGGGGACGTATGGGAGCACCCGAACGCGGAAGAACTGTGGGATTTTGATTCGGATTGACAGGCAGACAACGCACCGT
CATTCGCACTGCTCCGAACGTGAGCATCCGGCTCCAAGCAGAGGGAGGGGCGGCGCGTATGTGCCAACCGGATAAGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1116 bp371 aa661181+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRDWVVHRCRGRLLMRKIKEKPYVTNLLEFQRAFPDEQACLDYLELVRWPDGFTCPKCDVLDEPYYISTRPRVLVCRSCRAETSLTAGTIMHRTKTSLQV
WFWAAYLVTSQTPGMSALQFKRQLGLTRYETAFQMLHKLRVAMVRPSRSKIGEGEDVDGNLQCYSVELDETYVGGRTRGKGRGVTEKVVAVGAVEVRISE
KEDLVDGEYKKRRYAGRLRMRLIPNRGKVALTKFATENIKTGTTVMTDDWVGYVDLWKWFDHEVVMPDVEAEGMTKSELQAEKGEQIPLIHLVFSNLKTW
IQGTHHGVSPKHLQAYLNEYVFRFNRRFYPMSGFHSVLGIAMEVEGSEYKDLYGDVWEHPNAEELWDFDSD

 

Blast result :
Comments
ISDssp7 is 65% aa similar to ISCARN100.
References
1] ISfinder annotation (2017)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.