ISSat1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014519 ND Sinomonas atrocyanea
Sinomonas atrocyanea KCTC 3377 pSA01
DNA section
IS Length : 1518 bp

Ends


IR Length : 29/33

IRL : ATTGGGTATCTGCTTAGCTGAAGTAGGCTATGTGCATGGCCGACATGTCG
IRR : ATTGGGTATCTGCTTAGCTGAAGTGCTCTCTGTCCCCGATGTCCTTGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAATGTAGAACACACGTTCGATTGCTG8

DNA sequence

ATTGGGTATCTGCTTAGCTGAAGTAGGCTATGTGCATGGCCGACATGTCGCCGCAAGTGCCTCGAGCGGGCGTGGACTACCCCAAGACGTTCGGGCAGTT
CCAGGAATGGTTCAGCACCGACGAGGCCTGCTTCGAGTACCTTGCGCGGCTGCGCTGGGCGGAGGGCTTCGTGTGCCCGAAGTGCGGCGGGCGCGAATAC
TGGCGCACTGGTGCCGGGCTGTGGATGTGCAAGGCGTGCTCACGCCGGACGTCTGTCACGGCCGGCACGATCTTCGACCGCACCCGCACGCCGTTGCGAA
CCTGGTTCGCGGCGATATGGTTCGTGACCTCACAGAAGAACGGCGTGTCCGCCCTCGGGCTGCAGCGCGTCCTCGGGTTCGGCTCGTATGAGACGGCGTG
GGCCTGGATGCACAAGCTCCGCCGCGCCATGGTCCGCCCCGACCGGGAGCTGCTCTCCGGGCTGGTCGAGGTCGACGAGAGCTTCATCGGCGGTGTCCAC
CGCGGGATGCCCGGCATCGGCCCTGACAAGATCTCGGTCCTGATCGCCGCTGAGCATCTGGACCACAACCGGATTGGGCGTATCCGCCTCGAGCCCGGGC
CGACCGACCGCAGGTTGGCCCTGGTGAAGTTCGGCCAGCGCGTCGTCGCTCCCGGCTCGACGATCCGCACCGACGGGGCCAGGCAGCTGCGGCGCTTCGC
CGACCTGGGCTACCAGCACGAGTACTTCACCCAGCTCGGCTCGGACATCCCGGCGCACGTGAACATGCCGGCGGTCCACATGGCGGCCTCGCAGCTCAAG
CGCTGGATCGACGGCACCCTCCACCAGGGCATCTCACGGGAACAGCTGGCCTACTACCTCGACGAGTTCACCTTCCGATTCAACCGCCGCACATCCACCA
GCCGCGGGCTGCTGTTCTACCGGCTCCTCCAGCAGGCCACCAACACCGACCCCGCGCCGCTGAAAGACCTCGTCATCCCCCACGACAGCTCTGGCGGCCA
GAGACCCCAGAGCACTGCACAAGGGCCGATCTGGCCCGATCAACGGCTACACGTCATCGGCAGTCAGACCAGCTGATCAGGGCCTGGGCCTGTAATCCTC
GAACTCCCAGTAGCCAAGCCGCGCGATCTTCTCACCCACGGTCGGCCAATCCGGACCCTCGACAGAGTTGATCTGATTTCGCAGGAAGTCCACTGCCACA
CCCAGATCGAGCGGTTCGACGATCAGGTGATGGCGACCCACCCGAGGGCCCTGCTCCGTGACCACACGACGCAACCACAACGGAGTGCACACGAGCACAT
CGAATGACTCCTCGCCGGGGCCGTCGGCCGGGCCAACCATCAGGCTTACCCAGACACCATCGTCGGTGGGATCCTCCGGCTCGTAAGTGTCGAGGTCGAC
GTCACTGCTGTGCGCCGATCGCAGAACTGCTCTCATAGGAGGTCAATAATGCCGAGTGCCCGTCCCCCTGCCAAGGACATCGGGGACAGAGAGCACTTCA
GCTAAGCAGATACCCAAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1041 bp346 aa361076+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MADMSPQVPRAGVDYPKTFGQFQEWFSTDEACFEYLARLRWAEGFVCPKCGGREYWRTGAGLWMCKACSRRTSVTAGTIFDRTRTPLRTWFAAIWFVTSQ
KNGVSALGLQRVLGFGSYETAWAWMHKLRRAMVRPDRELLSGLVEVDESFIGGVHRGMPGIGPDKISVLIAAEHLDHNRIGRIRLEPGPTDRRLALVKFG
QRVVAPGSTIRTDGARQLRRFADLGYQHEYFTQLGSDIPAHVNMPAVHMAASQLKRWIDGTLHQGISREQLAYYLDEFTFRFNRRTSTSRGLLFYRLLQQ
ATNTDPAPLKDLVIPHDSSGGQRPQSTAQGPIWPDQRLHVIGSQTS

 

Blast result :
Comments
ISSat1 is 68% aa similar to ISMva1.
References
1] ISfinder annotation (2017)
2] Kim,K.M. (2016) Direct GenBank submission.