ISScsp1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MAYW01000362 | ND | Scalindua sp. | Scalindua sp. BSI-1 Candidatus Scalindua sp. BSI-1 |
DNA section
IS Length : 1009 bp
Ends
IR Length : 31/36
IRL : ATAGGGTTATACGCTTTACTCCCATGGCTACAATATGTAGAATAGTGGGG
IRR : ATAGGGTTATACGCTTGACTCCCAATTCTACTATATATTGTGTTTATTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTTAATTCATTTACTTTA | AATATAAAATCTCTCAATGT | 0 |
DNA sequence
ATAGGGTTATACGCTTTACTCCCATGGCTACAATATGTAGAATAGTGGGGTATGAAAGATTACCCAAAAACACTGCTTGATTTTGAAAAACGTTTTACGA
CAGAAGAAGCATGTCGAGATTATCTTTGTCAATTGCGCTGGCCAGAAGGAATTTATTGTCCACGTTGCAGTCATAAAAGAGTACGAATCACGAATAGAAA
GCTGCATAGATGTTGTCAGTGTCAATATGAATTTTCTGTAACAGCGGGCACCATTTTTCAAGATACACGAATCCCTTTGCGGTTGTGGTTTCGTATAATA
TGGCAAGTAGTTAGCCAAAAACAAGGCATCAGCGCACTTGGTCTTCAAAAAATCTTGGGATTTAGCAGATACGAAACAATATGGTCCTTGTTGCACAAAT
TGCGGATTGCAATGGTTCGTCCTGGTCGTGATCTCTTGGTTGGGACTGTTCAAGTAGATGAAATATATGTTGGAGGCCGTCGTCCTGGAAAGCGCGGTCG
AGGTGCCGAGGGAAAAGCGCTGGTACTTATTGCTGTTGAAGATAAAGATAAGCGCTCTGGCCGAATCCGTCTTCATAAGGTTAAGGATGCCTCTACGGAG
TGCTTGACTCCAGCAGTTAAAGAAAGTGTGGAACCAGGCAGCAAAGTATGCACTGACGATTGGAATGGTTATAATAAATTGTCCTCTTCTGGTTATAATC
ATACTATTATTCGTAAAACAACCGATGTTGGTGAAAATTTATTGCCTTTAGCTAATCGAGTAGCATCCTTATTGAAGCGATGGTTGCAAGGGACGCATCA
AGGTTCGCCACGTTCTTCTCATTTGGACTATTATTTAGATGAGTTTGTGTTTCGATATAATCGAAGAACCTCCAGATCGCGAGGTTTATTGTTTTACCGC
CTGATCCAGCAGGCAGTGGCTATCAAGCCCGTAAAGAAGAAAGATATTTCGCAACCTTAGCAATAAACACAATATATAGTAGAATTGGGAGTCAAGCGTA
TAACCCTAT
CAGAAGAAGCATGTCGAGATTATCTTTGTCAATTGCGCTGGCCAGAAGGAATTTATTGTCCACGTTGCAGTCATAAAAGAGTACGAATCACGAATAGAAA
GCTGCATAGATGTTGTCAGTGTCAATATGAATTTTCTGTAACAGCGGGCACCATTTTTCAAGATACACGAATCCCTTTGCGGTTGTGGTTTCGTATAATA
TGGCAAGTAGTTAGCCAAAAACAAGGCATCAGCGCACTTGGTCTTCAAAAAATCTTGGGATTTAGCAGATACGAAACAATATGGTCCTTGTTGCACAAAT
TGCGGATTGCAATGGTTCGTCCTGGTCGTGATCTCTTGGTTGGGACTGTTCAAGTAGATGAAATATATGTTGGAGGCCGTCGTCCTGGAAAGCGCGGTCG
AGGTGCCGAGGGAAAAGCGCTGGTACTTATTGCTGTTGAAGATAAAGATAAGCGCTCTGGCCGAATCCGTCTTCATAAGGTTAAGGATGCCTCTACGGAG
TGCTTGACTCCAGCAGTTAAAGAAAGTGTGGAACCAGGCAGCAAAGTATGCACTGACGATTGGAATGGTTATAATAAATTGTCCTCTTCTGGTTATAATC
ATACTATTATTCGTAAAACAACCGATGTTGGTGAAAATTTATTGCCTTTAGCTAATCGAGTAGCATCCTTATTGAAGCGATGGTTGCAAGGGACGCATCA
AGGTTCGCCACGTTCTTCTCATTTGGACTATTATTTAGATGAGTTTGTGTTTCGATATAATCGAAGAACCTCCAGATCGCGAGGTTTATTGTTTTACCGC
CTGATCCAGCAGGCAGTGGCTATCAAGCCCGTAAAGAAGAAAGATATTTCGCAACCTTAGCAATAAACACAATATATAGTAGAATTGGGAGTCAAGCGTA
TAACCCTAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 52 | 960 | + | No |
Chemistry : DDE
ORF sequence :
MKDYPKTLLDFEKRFTTEEACRDYLCQLRWPEGIYCPRCSHKRVRITNRKLHRCCQCQYEFSVTAGTIFQDTRIPLRLWFRIIWQVVSQKQGISALGLQK
ILGFSRYETIWSLLHKLRIAMVRPGRDLLVGTVQVDEIYVGGRRPGKRGRGAEGKALVLIAVEDKDKRSGRIRLHKVKDASTECLTPAVKESVEPGSKVC
TDDWNGYNKLSSSGYNHTIIRKTTDVGENLLPLANRVASLLKRWLQGTHQGSPRSSHLDYYLDEFVFRYNRRTSRSRGLLFYRLIQQAVAIKPVKKKDIS
QP
ILGFSRYETIWSLLHKLRIAMVRPGRDLLVGTVQVDEIYVGGRRPGKRGRGAEGKALVLIAVEDKDKRSGRIRLHKVKDASTECLTPAVKESVEPGSKVC
TDDWNGYNKLSSSGYNHTIIRKTTDVGENLLPLANRVASLLKRWLQGTHQGSPRSSHLDYYLDEFVFRYNRRTSRSRGLLFYRLIQQAVAIKPVKKKDIS
QP
Blast result :
Comments
ISScsp1 is 71% aa similar to ISDth3.
References
1] ISfinder annotation (2017)
2] Speth,D.R., Lagkouvardos,I., Wang,Y., Qian,P.-Y., Dutilh,B.E. and Jetten,M.S. (2016) Direct GenBank submission.
2] Speth,D.R., Lagkouvardos,I., Wang,Y., Qian,P.-Y., Dutilh,B.E. and Jetten,M.S. (2016) Direct GenBank submission.