ISScsp1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MAYW01000362 ND Scalindua sp.
Scalindua sp. BSI-1
Candidatus Scalindua sp. BSI-1
DNA section
IS Length : 1009 bp

Ends


IR Length : 31/36

IRL : ATAGGGTTATACGCTTTACTCCCATGGCTACAATATGTAGAATAGTGGGG
IRR : ATAGGGTTATACGCTTGACTCCCAATTCTACTATATATTGTGTTTATTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTTAATTCATTTACTTTAAATATAAAATCTCTCAATGT0

DNA sequence

ATAGGGTTATACGCTTTACTCCCATGGCTACAATATGTAGAATAGTGGGGTATGAAAGATTACCCAAAAACACTGCTTGATTTTGAAAAACGTTTTACGA
CAGAAGAAGCATGTCGAGATTATCTTTGTCAATTGCGCTGGCCAGAAGGAATTTATTGTCCACGTTGCAGTCATAAAAGAGTACGAATCACGAATAGAAA
GCTGCATAGATGTTGTCAGTGTCAATATGAATTTTCTGTAACAGCGGGCACCATTTTTCAAGATACACGAATCCCTTTGCGGTTGTGGTTTCGTATAATA
TGGCAAGTAGTTAGCCAAAAACAAGGCATCAGCGCACTTGGTCTTCAAAAAATCTTGGGATTTAGCAGATACGAAACAATATGGTCCTTGTTGCACAAAT
TGCGGATTGCAATGGTTCGTCCTGGTCGTGATCTCTTGGTTGGGACTGTTCAAGTAGATGAAATATATGTTGGAGGCCGTCGTCCTGGAAAGCGCGGTCG
AGGTGCCGAGGGAAAAGCGCTGGTACTTATTGCTGTTGAAGATAAAGATAAGCGCTCTGGCCGAATCCGTCTTCATAAGGTTAAGGATGCCTCTACGGAG
TGCTTGACTCCAGCAGTTAAAGAAAGTGTGGAACCAGGCAGCAAAGTATGCACTGACGATTGGAATGGTTATAATAAATTGTCCTCTTCTGGTTATAATC
ATACTATTATTCGTAAAACAACCGATGTTGGTGAAAATTTATTGCCTTTAGCTAATCGAGTAGCATCCTTATTGAAGCGATGGTTGCAAGGGACGCATCA
AGGTTCGCCACGTTCTTCTCATTTGGACTATTATTTAGATGAGTTTGTGTTTCGATATAATCGAAGAACCTCCAGATCGCGAGGTTTATTGTTTTACCGC
CTGATCCAGCAGGCAGTGGCTATCAAGCCCGTAAAGAAGAAAGATATTTCGCAACCTTAGCAATAAACACAATATATAGTAGAATTGGGAGTCAAGCGTA
TAACCCTAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
909 bp302 aa52960+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKDYPKTLLDFEKRFTTEEACRDYLCQLRWPEGIYCPRCSHKRVRITNRKLHRCCQCQYEFSVTAGTIFQDTRIPLRLWFRIIWQVVSQKQGISALGLQK
ILGFSRYETIWSLLHKLRIAMVRPGRDLLVGTVQVDEIYVGGRRPGKRGRGAEGKALVLIAVEDKDKRSGRIRLHKVKDASTECLTPAVKESVEPGSKVC
TDDWNGYNKLSSSGYNHTIIRKTTDVGENLLPLANRVASLLKRWLQGTHQGSPRSSHLDYYLDEFVFRYNRRTSRSRGLLFYRLIQQAVAIKPVKKKDIS
QP

 

Blast result :
Comments
ISScsp1 is 71% aa similar to ISDth3.
References
1] ISfinder annotation (2017)
2] Speth,D.R., Lagkouvardos,I., Wang,Y., Qian,P.-Y., Dutilh,B.E. and Jetten,M.S. (2016) Direct GenBank submission.