ISCrfl1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNIB01000008 | ND | Cryobacterium flavum | Cryobacterium flavum CGMCC 1.11215 |
DNA section
IS Length : 1346 bp
Ends
IR Length : 23/26
IRL : ATTGGGTATCTGCTTGGGTGAAGTAGCCTTGGTTTCATGCCGATTTCACC
IRR : ACTGGGTATCTGCTTAGGTGAAGTGGGTAACGGCCCGATGGAAAGTTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAAAATAGA | ATATTCAT | ACTATATGAG | 8 |
DNA sequence
ATTGGGTATCTGCTTGGGTGAAGTAGCCTTGGTTTCATGCCGATTTCACCGAGCGTCAGGCCGCTGTCGGGTGTGGATTATCCGTCCACGTTCCTCGAGT
TTCAGGACTGGTTTTCCACGGATGAGAAATGCCTCGATTACCTCGCACGGTTGCGGTGGCCGAACGGATTCGTGTGCCCGCGATGCGCCGCAACGACCTC
GTGGCGGACAACGGACGGCCTATGGATGTGCACGGCCTGTTCGCGGCGCACCTCGGTAACGGCTGGGACTATCTTCGACCGGACACGCACTCCGATGCGG
ACCTGGTTCGCCGCCATCTGGTTTGTCACCGCGCAGAAAAACGGGGTGTCTGCCCTCGGCCTGCAACGTGTCCTGGGGTTGAAATCCTACGAGACCGCGT
GGGTCTGGATGCACAAGTTGCGGCGCGCGATGGTCGTCCCGGAGCGGGATCTGCTCACCGGCACCGTCGAGGTCGACGAGACCTTCGTCGGGGGCATCTC
CCGCGGCAATGTGGGGCGCTCAAGCGACAAGGTTCCGGTCATCGTGGCTGCAGAGAGCTTAGGGAAGAACCGGATTGGTCGCATCAGGCTGGAGCCAACA
CCCGAAGGTCGGCTCACCCTCGTCAATTTCACCCAACGCGTCGTCGTACCCGGCGCGATGATCAAAACCGACGGCGCCCGGGAACTCAGGCGCCTGTCCG
CGCTGGGCTTTGAGCACCAGTATTTCACCCAGCTCGGCTCGACCGTCCCGGCCCACATCGACCTTCCGGCGGTGCACCGGGTGGCTTCACTTTTGAAGCG
ATGGATGATCGGCACGATGCACTACGGAGCGTCCCGAGAGCAGTTCGGGTTCTACCTCGACGAGTTCACCTTCCGCTTCAACCGGCGGACATCGAAAAGC
CGAGGTCTGTTGTTCTACCGCCTCATGCAACAGGCCGTTATTACCGGGCCGCACCCGATCAAAAGCCTCGTAATTCCACGAGACGATTCGGCAGCCTGTG
ACGTCAGGCCGACGCCGGATCCAGCGCCCACTGGCGGCTTAGTCCCCTGACTCCAACAGGTACGCTCAGAGCATGTCCCTTATCCGCACGCAGGCCATCG
TCAGCGTTACAATTCCCGGACACGATCTCCGACGCGCTGCGGAGAGCCTCAAGCAAGCATTGCTTCCCTACCCAGAAGCACGAATCGTCGCGTTAACGCA
AAAGACAAACTGGATGACCTCTTTCATGGGGACGACGGCTCTACTTGCCGCCATCGATTACACGCCAGCCCCCGAAGCGCTCTAACTTCCGCCGCTGTCA
ACTTTCCATCGGGCCGTTACCCACTTCACCTAAGCAGATACCCAGT
TTCAGGACTGGTTTTCCACGGATGAGAAATGCCTCGATTACCTCGCACGGTTGCGGTGGCCGAACGGATTCGTGTGCCCGCGATGCGCCGCAACGACCTC
GTGGCGGACAACGGACGGCCTATGGATGTGCACGGCCTGTTCGCGGCGCACCTCGGTAACGGCTGGGACTATCTTCGACCGGACACGCACTCCGATGCGG
ACCTGGTTCGCCGCCATCTGGTTTGTCACCGCGCAGAAAAACGGGGTGTCTGCCCTCGGCCTGCAACGTGTCCTGGGGTTGAAATCCTACGAGACCGCGT
GGGTCTGGATGCACAAGTTGCGGCGCGCGATGGTCGTCCCGGAGCGGGATCTGCTCACCGGCACCGTCGAGGTCGACGAGACCTTCGTCGGGGGCATCTC
CCGCGGCAATGTGGGGCGCTCAAGCGACAAGGTTCCGGTCATCGTGGCTGCAGAGAGCTTAGGGAAGAACCGGATTGGTCGCATCAGGCTGGAGCCAACA
CCCGAAGGTCGGCTCACCCTCGTCAATTTCACCCAACGCGTCGTCGTACCCGGCGCGATGATCAAAACCGACGGCGCCCGGGAACTCAGGCGCCTGTCCG
CGCTGGGCTTTGAGCACCAGTATTTCACCCAGCTCGGCTCGACCGTCCCGGCCCACATCGACCTTCCGGCGGTGCACCGGGTGGCTTCACTTTTGAAGCG
ATGGATGATCGGCACGATGCACTACGGAGCGTCCCGAGAGCAGTTCGGGTTCTACCTCGACGAGTTCACCTTCCGCTTCAACCGGCGGACATCGAAAAGC
CGAGGTCTGTTGTTCTACCGCCTCATGCAACAGGCCGTTATTACCGGGCCGCACCCGATCAAAAGCCTCGTAATTCCACGAGACGATTCGGCAGCCTGTG
ACGTCAGGCCGACGCCGGATCCAGCGCCCACTGGCGGCTTAGTCCCCTGACTCCAACAGGTACGCTCAGAGCATGTCCCTTATCCGCACGCAGGCCATCG
TCAGCGTTACAATTCCCGGACACGATCTCCGACGCGCTGCGGAGAGCCTCAAGCAAGCATTGCTTCCCTACCCAGAAGCACGAATCGTCGCGTTAACGCA
AAAGACAAACTGGATGACCTCTTTCATGGGGACGACGGCTCTACTTGCCGCCATCGATTACACGCCAGCCCCCGAAGCGCTCTAACTTCCGCCGCTGTCA
ACTTTCCATCGGGCCGTTACCCACTTCACCTAAGCAGATACCCAGT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 37 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MPISPSVRPLSGVDYPSTFLEFQDWFSTDEKCLDYLARLRWPNGFVCPRCAATTSWRTTDGLWMCTACSRRTSVTAGTIFDRTRTPMRTWFAAIWFVTAQ
KNGVSALGLQRVLGLKSYETAWVWMHKLRRAMVVPERDLLTGTVEVDETFVGGISRGNVGRSSDKVPVIVAAESLGKNRIGRIRLEPTPEGRLTLVNFTQ
RVVVPGAMIKTDGARELRRLSALGFEHQYFTQLGSTVPAHIDLPAVHRVASLLKRWMIGTMHYGASREQFGFYLDEFTFRFNRRTSKSRGLLFYRLMQQA
VITGPHPIKSLVIPRDDSAACDVRPTPDPAPTGGLVP
KNGVSALGLQRVLGLKSYETAWVWMHKLRRAMVVPERDLLTGTVEVDETFVGGISRGNVGRSSDKVPVIVAAESLGKNRIGRIRLEPTPEGRLTLVNFTQ
RVVVPGAMIKTDGARELRRLSALGFEHQYFTQLGSTVPAHIDLPAVHRVASLLKRWMIGTMHYGASREQFGFYLDEFTFRFNRRTSKSRGLLFYRLMQQA
VITGPHPIKSLVIPRDDSAACDVRPTPDPAPTGGLVP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
213 bp | 70 aa | 1073 | 1285 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MSLIRTQAIVSVTIPGHDLRRAAESLKQALLPYPEARIVALTQKTNWMTSFMGTTALLAAIDYTPAPEAL
Blast result :
Comments
ISCrfl1 is 70% aa similar to ISMva1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.