ISCrfl1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNIB01000008 ND Cryobacterium flavum
Cryobacterium flavum CGMCC 1.11215
DNA section
IS Length : 1346 bp

Ends


IR Length : 23/26

IRL : ATTGGGTATCTGCTTGGGTGAAGTAGCCTTGGTTTCATGCCGATTTCACC
IRR : ACTGGGTATCTGCTTAGGTGAAGTGGGTAACGGCCCGATGGAAAGTTGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCAAAATAGAATATTCATACTATATGAG8

DNA sequence

ATTGGGTATCTGCTTGGGTGAAGTAGCCTTGGTTTCATGCCGATTTCACCGAGCGTCAGGCCGCTGTCGGGTGTGGATTATCCGTCCACGTTCCTCGAGT
TTCAGGACTGGTTTTCCACGGATGAGAAATGCCTCGATTACCTCGCACGGTTGCGGTGGCCGAACGGATTCGTGTGCCCGCGATGCGCCGCAACGACCTC
GTGGCGGACAACGGACGGCCTATGGATGTGCACGGCCTGTTCGCGGCGCACCTCGGTAACGGCTGGGACTATCTTCGACCGGACACGCACTCCGATGCGG
ACCTGGTTCGCCGCCATCTGGTTTGTCACCGCGCAGAAAAACGGGGTGTCTGCCCTCGGCCTGCAACGTGTCCTGGGGTTGAAATCCTACGAGACCGCGT
GGGTCTGGATGCACAAGTTGCGGCGCGCGATGGTCGTCCCGGAGCGGGATCTGCTCACCGGCACCGTCGAGGTCGACGAGACCTTCGTCGGGGGCATCTC
CCGCGGCAATGTGGGGCGCTCAAGCGACAAGGTTCCGGTCATCGTGGCTGCAGAGAGCTTAGGGAAGAACCGGATTGGTCGCATCAGGCTGGAGCCAACA
CCCGAAGGTCGGCTCACCCTCGTCAATTTCACCCAACGCGTCGTCGTACCCGGCGCGATGATCAAAACCGACGGCGCCCGGGAACTCAGGCGCCTGTCCG
CGCTGGGCTTTGAGCACCAGTATTTCACCCAGCTCGGCTCGACCGTCCCGGCCCACATCGACCTTCCGGCGGTGCACCGGGTGGCTTCACTTTTGAAGCG
ATGGATGATCGGCACGATGCACTACGGAGCGTCCCGAGAGCAGTTCGGGTTCTACCTCGACGAGTTCACCTTCCGCTTCAACCGGCGGACATCGAAAAGC
CGAGGTCTGTTGTTCTACCGCCTCATGCAACAGGCCGTTATTACCGGGCCGCACCCGATCAAAAGCCTCGTAATTCCACGAGACGATTCGGCAGCCTGTG
ACGTCAGGCCGACGCCGGATCCAGCGCCCACTGGCGGCTTAGTCCCCTGACTCCAACAGGTACGCTCAGAGCATGTCCCTTATCCGCACGCAGGCCATCG
TCAGCGTTACAATTCCCGGACACGATCTCCGACGCGCTGCGGAGAGCCTCAAGCAAGCATTGCTTCCCTACCCAGAAGCACGAATCGTCGCGTTAACGCA
AAAGACAAACTGGATGACCTCTTTCATGGGGACGACGGCTCTACTTGCCGCCATCGATTACACGCCAGCCCCCGAAGCGCTCTAACTTCCGCCGCTGTCA
ACTTTCCATCGGGCCGTTACCCACTTCACCTAAGCAGATACCCAGT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa371050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPISPSVRPLSGVDYPSTFLEFQDWFSTDEKCLDYLARLRWPNGFVCPRCAATTSWRTTDGLWMCTACSRRTSVTAGTIFDRTRTPMRTWFAAIWFVTAQ
KNGVSALGLQRVLGLKSYETAWVWMHKLRRAMVVPERDLLTGTVEVDETFVGGISRGNVGRSSDKVPVIVAAESLGKNRIGRIRLEPTPEGRLTLVNFTQ
RVVVPGAMIKTDGARELRRLSALGFEHQYFTQLGSTVPAHIDLPAVHRVASLLKRWMIGTMHYGASREQFGFYLDEFTFRFNRRTSKSRGLLFYRLMQQA
VITGPHPIKSLVIPRDDSAACDVRPTPDPAPTGGLVP

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
213 bp70 aa10731285+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSLIRTQAIVSVTIPGHDLRRAAESLKQALLPYPEARIVALTQKTNWMTSFMGTTALLAAIDYTPAPEAL

 

Blast result :
Comments
ISCrfl1 is 70% aa similar to ISMva1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.