ISBusp8
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| JH603159 | ND | Burkholderia sp. | Burkholderia sp. Ch1-1 |
DNA section
IS Length : 1063 bp
Ends
IR Length : 22/23
IRL : ATGGGCTATCCATTTAGCTCCACTTGCGCCATGATCGGGTAGTGAGCGAA
IRR : AAGGGCTATCCATTTAGCTCCACAATTTCACATTATGGTGAAGCTTTGAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAAATACTGT | ATGTTTAC | ACAGTACACT | 8 |
DNA sequence
ATGGGCTATCCATTTAGCTCCACTTGCGCCATGATCGGGTAGTGAGCGAACTCAAGCATACCCCGACTGCCGGTGAAGATTTCCCTCGAACATGGAGCCA
GTTTCTGGACTGGTTTGCAACCGAGGATGACTGTCTTCGCTATCTCGAACGGTTGCGCTGGCGTGACGGGTTTGTGTGCCCGTCCTGTGCAAGCAGGGAC
GCCCCCTATCGTGCCAGCCGCGCCCGGCTAATGTGCCAATCCTGCCGTCATCAGGGCACGGTCACGGCGGGCACCATCTTCGAGAAGACGCGCACACCCT
TGAAGGTCTGGCTGGCGGCGGCCTGGTATATAACCAGCCAGAAACATGGCGTCAGCGCTCTGGGATTGCAGAGGGTATTGGGGCTGGGCAGCTATCAAAC
GGCATGGACCATGCTGCACCGCTTTCGGCGGGCGATGGTCAGGCCGGGGCGCGAGCGGCTGGCCGGCACGGTTGAGGTTGATGAGGTCTATCTGGCCATT
CACGACCGGCGAGTCGCCCAGTCAAGTGCCGGGCGCAAGAGCCACACGACCAAGGCTCTCATTGCGGTGGCCGTGGAAATCCTGGAGCCCAAAGGTTTCG
GACGTATCCGTTTGCAACCCATTGCCGACGATACGGCCGCATGCGTTTTGCCCTTCGTGCGGGAGGTTGTGGAACCCGGCTCGTTACTTCACACCGATGG
TTCCTCCATCTATCATGGCCTGACCGAAGAGGGTTATCAGCATAAGCGGATCGTCATGAGTGGCGCTGACAGCCCCGCACATATCTCGATGCCGGGCGTG
CACCGCGTGTCGGCACTGCTTAAGCGCTGGCTGCTTGGCACCCACCACGGTGCCGTGAAGCCACTCCAACTCGACCATTATCTCGACGAATTTGTATTTC
GCTTCAACCGCCGGACCTCGCGTTCTCGCGGCCAGCTCTTTTACCGCCTGCTTGAGCAGGCCGTAGTGGCCGAACCCGTCACGTATCGCCAGATCGCGCA
ACGTCCGCCAAAGGTCAAAGCTTCACCATAATGTGAAATTGTGGAGCTAAATGGATAGCCCTT
GTTTCTGGACTGGTTTGCAACCGAGGATGACTGTCTTCGCTATCTCGAACGGTTGCGCTGGCGTGACGGGTTTGTGTGCCCGTCCTGTGCAAGCAGGGAC
GCCCCCTATCGTGCCAGCCGCGCCCGGCTAATGTGCCAATCCTGCCGTCATCAGGGCACGGTCACGGCGGGCACCATCTTCGAGAAGACGCGCACACCCT
TGAAGGTCTGGCTGGCGGCGGCCTGGTATATAACCAGCCAGAAACATGGCGTCAGCGCTCTGGGATTGCAGAGGGTATTGGGGCTGGGCAGCTATCAAAC
GGCATGGACCATGCTGCACCGCTTTCGGCGGGCGATGGTCAGGCCGGGGCGCGAGCGGCTGGCCGGCACGGTTGAGGTTGATGAGGTCTATCTGGCCATT
CACGACCGGCGAGTCGCCCAGTCAAGTGCCGGGCGCAAGAGCCACACGACCAAGGCTCTCATTGCGGTGGCCGTGGAAATCCTGGAGCCCAAAGGTTTCG
GACGTATCCGTTTGCAACCCATTGCCGACGATACGGCCGCATGCGTTTTGCCCTTCGTGCGGGAGGTTGTGGAACCCGGCTCGTTACTTCACACCGATGG
TTCCTCCATCTATCATGGCCTGACCGAAGAGGGTTATCAGCATAAGCGGATCGTCATGAGTGGCGCTGACAGCCCCGCACATATCTCGATGCCGGGCGTG
CACCGCGTGTCGGCACTGCTTAAGCGCTGGCTGCTTGGCACCCACCACGGTGCCGTGAAGCCACTCCAACTCGACCATTATCTCGACGAATTTGTATTTC
GCTTCAACCGCCGGACCTCGCGTTCTCGCGGCCAGCTCTTTTACCGCCTGCTTGAGCAGGCCGTAGTGGCCGAACCCGTCACGTATCGCCAGATCGCGCA
ACGTCCGCCAAAGGTCAAAGCTTCACCATAATGTGAAATTGTGGAGCTAAATGGATAGCCCTT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 990 bp | 329 aa | 42 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MSELKHTPTAGEDFPRTWSQFLDWFATEDDCLRYLERLRWRDGFVCPSCASRDAPYRASRARLMCQSCRHQGTVTAGTIFEKTRTPLKVWLAAAWYITSQ
KHGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGRERLAGTVEVDEVYLAIHDRRVAQSSAGRKSHTTKALIAVAVEILEPKGFGRIRLQPIADDTAA
CVLPFVREVVEPGSLLHTDGSSIYHGLTEEGYQHKRIVMSGADSPAHISMPGVHRVSALLKRWLLGTHHGAVKPLQLDHYLDEFVFRFNRRTSRSRGQLF
YRLLEQAVVAEPVTYRQIAQRPPKVKASP
KHGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGRERLAGTVEVDEVYLAIHDRRVAQSSAGRKSHTTKALIAVAVEILEPKGFGRIRLQPIADDTAA
CVLPFVREVVEPGSLLHTDGSSIYHGLTEEGYQHKRIVMSGADSPAHISMPGVHRVSALLKRWLLGTHHGAVKPLQLDHYLDEFVFRFNRRTSRSRGQLF
YRLLEQAVVAEPVTYRQIAQRPPKVKASP
Blast result :
Comments
ISBusp8 is 83% aa similar to ISBusp7.
References
1] ISfinder annotation (2017)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bradfield,C., Sheety,A., Cheng,S., Chain,P., Denef,V., Hickey,W. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bradfield,C., Sheety,A., Cheng,S., Chain,P., Denef,V., Hickey,W. and Woyke,T. (2011) Direct GenBank submission.