ISMspa1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FLOB01000007 ND Marinomonas spartinae
Marinomonas spartinae CECT 8886
DNA section
IS Length : 1028 bp

Ends


IR Length : 24/25

IRL : AAGGGGTATCCATTTAGAGCAACCAATGTCAATATATAGTGATGAACAAA
IRR : AAGGGCTATCCATTTAGAGCAACCAGACACTATATTTAGTGTTTATCTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGTACTGTGTTTATATACAGTAATGT8

DNA sequence

AAGGGGTATCCATTTAGAGCAACCAATGTCAATATATAGTGATGAACAAAAAATCTTCTTCACTCACAGCGGGTATTGATTACCCTAAAAATTGGAGCCA
ATTTGTTGACTGGTTTCACGATGAGCAAGCTTGTCGTGATTATCTGTACGCGCTTCGCTGGCCTAATGGCTTCATATGCCCCAATTGTTTGGTACATAAT
GTGCCCTATACTCTTCCAAAAAATAAACTTAAATGTGTTCAGTGTCGAAAACAAACTTCTGTCACAGCAGGCACTATTTTTGAGAAAACGAGAACGCCTC
TTAAAGAATGGTTTGCTGCGATTTGGTACCTCACCAATCAGAAAAATGGCGTAAGTGCACTTGGTATTCAGCGCTTACTCGGACTTGGCAGCTATCAAAC
GGCTTGGGCGATATTACACCGATTACGCTACGCAATGATCAATCCTGAAAGAGACAAATTATCTGGACTTGTTGAGGTAGACGAAACCTTTGTTGGTGGT
GTAGTCGATATAAATCAACAAGATAAGAAGAAATTTGTTGTATTGGTTGCAATAGAGCTTATAGAACCAAAAGGGTTTGGTCGCATTAGATTAAGACAGG
TAGATAAAGCAACAAAAAACAACGTTGAGCAATTTATAACAGATGTTATTGAGCCGAATAGTCGAATTCACACTGACGGATCTGCCATTTATGGTTCAGT
TGATAACATGGGATATTCAAGAAAAAAGACCGTACATCTTGGTTCAAATATACCAGCCCACGAAACTATGCCAGGGGTTCACAGAGTAGCTTCTTTATTA
AAGCGCTGGCTATTGGGAACCTATCAAGGAGCTGTTCAATCTAAGCAGCTCGATTACTACTTAGATGAATATACCTTTAGATTTAACAGAAGAAAATCTC
GGTCTAGAGGGCTATTGTTTTATCGATTACTTGAGCAATCGGTAACCACAAAACCCCTAACCTATAAGGACATTAAAACCAGATAAACACTAAATATAGT
GTCTGGTTGCTCTAAATGGATAGCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa42986+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKKSSSLTAGIDYPKNWSQFVDWFHDEQACRDYLYALRWPNGFICPNCLVHNVPYTLPKNKLKCVQCRKQTSVTAGTIFEKTRTPLKEWFAAIWYLTNQ
KNGVSALGIQRLLGLGSYQTAWAILHRLRYAMINPERDKLSGLVEVDETFVGGVVDINQQDKKKFVVLVAIELIEPKGFGRIRLRQVDKATKNNVEQFIT
DVIEPNSRIHTDGSAIYGSVDNMGYSRKKTVHLGSNIPAHETMPGVHRVASLLKRWLLGTYQGAVQSKQLDYYLDEYTFRFNRRKSRSRGLLFYRLLEQS
VTTKPLTYKDIKTR

 

Blast result :
Comments
ISMspa1 is 82% aa similar to ISSod11.
References
1] ISfinder annotation (2017)
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2016) Direct GenBank submission.