ISPho1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNXA01000011 | ND | Paraburkholderia hospita | Paraburkholderia hospita LMG 20598 |
DNA section
IS Length : 1078 bp
Ends
IR Length : 21/23
IRL : AAGGGCTATCCATTTAGCTCCACCTGAGCCATGATGGCGGCATGAGCGAA
IRR : AAGGGCTATCCATCTAGCTCCACAATTTCACATCGTGGAGGTTGATGGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGAACTGT | ATATTCAT | ACAGTACTAT | 8 |
DNA sequence
AAGGGCTATCCATTTAGCTCCACCTGAGCCATGATGGCGGCATGAGCGAAGCCCAGCATACGCCAGTTGCCGGTCAGGACTATCCCCAGACGTGGAGCCA
GTTCGAGGACTGGTTCTCCAGTGAATACGATTGCCTGCGCTACCTCGAACGATTGCGCTGGCGTGAAGGCTTTGTTTGTCCGCGCTGCGGATGCCGCGAT
GAGCCGTATCGGGCTAATCGCGCCCGGCTGGTCTGCCGGGCATGCCGCCTTCAATGCACCGTGACGTCGGGCACGATCTTCGACAAAACCCGCACCCCGC
TGAAGGTGTGGCTGGCTGCGGCGTGGTACATCACGAGTCAGAAGTCGGGCGTCAGCGCCCTCGGGCTGCAACGGGTTCTCGGGCTGGGCAGCTACCAGAC
GGCATGGACCATGTTGCACCGTTTCCGCCGAGCGATGGTTCGTCCCGGACGCGAACAGCTCAAGGGCTTGGTCGAGGTCGATCAAAGCTATCTGGCTATC
CGCGAAAATCGGGAAACTCCATCCGGCAAGCCGTCGAAAAAACGCACGACCAAGGCGTTGATCGTGATTGCCGTCGAAATCCTGGAGCCCCGTGGTTTCG
GCCGCATACGCCTGAAGCGTATTGATCGCGAGCGTGTGGCCGACGTACTTCCGTTTGTGAAGAGCGTTGTCGCCCCCGGTTCGGTGATTCGTACCGATGG
CTCGCCCATGTACTTCTCGCTGGAGCACCACTACGCACATGACCGGGTCGTGGTGACGTCTATCGCTGACGGCGAGCGTCCTCCGGCACACGTGCCGCTA
CCCGGTGTGCATCGTGTCGCCTCGCTGCTCAAACGGTGGCTGCTCGGCACGCATCAGGGAGCTGTCAAGCCTGATCAGCTTGACCATTATCTGGACGAGT
TCGTGTTTCGTTTCAACCGCCGCACTTCGCGTTCGCGCGGACTGCTCTTCTACCGGCTGCTTGAGCAAGCGCTCGCGACGGCTCCCATCACATACGACAA
CGTCGTAGTCAACAAATCACGCCGTAAAGACCATCAACCTCCACGATGTGAAATTGTGGAGCTAGATGGATAGCCCTT
GTTCGAGGACTGGTTCTCCAGTGAATACGATTGCCTGCGCTACCTCGAACGATTGCGCTGGCGTGAAGGCTTTGTTTGTCCGCGCTGCGGATGCCGCGAT
GAGCCGTATCGGGCTAATCGCGCCCGGCTGGTCTGCCGGGCATGCCGCCTTCAATGCACCGTGACGTCGGGCACGATCTTCGACAAAACCCGCACCCCGC
TGAAGGTGTGGCTGGCTGCGGCGTGGTACATCACGAGTCAGAAGTCGGGCGTCAGCGCCCTCGGGCTGCAACGGGTTCTCGGGCTGGGCAGCTACCAGAC
GGCATGGACCATGTTGCACCGTTTCCGCCGAGCGATGGTTCGTCCCGGACGCGAACAGCTCAAGGGCTTGGTCGAGGTCGATCAAAGCTATCTGGCTATC
CGCGAAAATCGGGAAACTCCATCCGGCAAGCCGTCGAAAAAACGCACGACCAAGGCGTTGATCGTGATTGCCGTCGAAATCCTGGAGCCCCGTGGTTTCG
GCCGCATACGCCTGAAGCGTATTGATCGCGAGCGTGTGGCCGACGTACTTCCGTTTGTGAAGAGCGTTGTCGCCCCCGGTTCGGTGATTCGTACCGATGG
CTCGCCCATGTACTTCTCGCTGGAGCACCACTACGCACATGACCGGGTCGTGGTGACGTCTATCGCTGACGGCGAGCGTCCTCCGGCACACGTGCCGCTA
CCCGGTGTGCATCGTGTCGCCTCGCTGCTCAAACGGTGGCTGCTCGGCACGCATCAGGGAGCTGTCAAGCCTGATCAGCTTGACCATTATCTGGACGAGT
TCGTGTTTCGTTTCAACCGCCGCACTTCGCGTTCGCGCGGACTGCTCTTCTACCGGCTGCTTGAGCAAGCGCTCGCGACGGCTCCCATCACATACGACAA
CGTCGTAGTCAACAAATCACGCCGTAAAGACCATCAACCTCCACGATGTGAAATTGTGGAGCTAGATGGATAGCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 42 | 1073 | + | No |
Chemistry : DDE
ORF sequence :
MSEAQHTPVAGQDYPQTWSQFEDWFSSEYDCLRYLERLRWREGFVCPRCGCRDEPYRANRARLVCRACRLQCTVTSGTIFDKTRTPLKVWLAAAWYITSQ
KSGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGREQLKGLVEVDQSYLAIRENRETPSGKPSKKRTTKALIVIAVEILEPRGFGRIRLKRIDRERVA
DVLPFVKSVVAPGSVIRTDGSPMYFSLEHHYAHDRVVVTSIADGERPPAHVPLPGVHRVASLLKRWLLGTHQGAVKPDQLDHYLDEFVFRFNRRTSRSRG
LLFYRLLEQALATAPITYDNVVVNKSRRKDHQPPRCEIVELDG
KSGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGREQLKGLVEVDQSYLAIRENRETPSGKPSKKRTTKALIVIAVEILEPRGFGRIRLKRIDRERVA
DVLPFVKSVVAPGSVIRTDGSPMYFSLEHHYAHDRVVVTSIADGERPPAHVPLPGVHRVASLLKRWLLGTHQGAVKPDQLDHYLDEFVFRFNRRTSRSRG
LLFYRLLEQALATAPITYDNVVVNKSRRKDHQPPRCEIVELDG
Blast result :
Comments
ISPho1 is 84% aa similar to ISBusp7.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.