ISPho1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNXA01000011 ND Paraburkholderia hospita
Paraburkholderia hospita LMG 20598
DNA section
IS Length : 1078 bp

Ends


IR Length : 21/23

IRL : AAGGGCTATCCATTTAGCTCCACCTGAGCCATGATGGCGGCATGAGCGAA
IRR : AAGGGCTATCCATCTAGCTCCACAATTTCACATCGTGGAGGTTGATGGTC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGAACTGTATATTCATACAGTACTAT8

DNA sequence

AAGGGCTATCCATTTAGCTCCACCTGAGCCATGATGGCGGCATGAGCGAAGCCCAGCATACGCCAGTTGCCGGTCAGGACTATCCCCAGACGTGGAGCCA
GTTCGAGGACTGGTTCTCCAGTGAATACGATTGCCTGCGCTACCTCGAACGATTGCGCTGGCGTGAAGGCTTTGTTTGTCCGCGCTGCGGATGCCGCGAT
GAGCCGTATCGGGCTAATCGCGCCCGGCTGGTCTGCCGGGCATGCCGCCTTCAATGCACCGTGACGTCGGGCACGATCTTCGACAAAACCCGCACCCCGC
TGAAGGTGTGGCTGGCTGCGGCGTGGTACATCACGAGTCAGAAGTCGGGCGTCAGCGCCCTCGGGCTGCAACGGGTTCTCGGGCTGGGCAGCTACCAGAC
GGCATGGACCATGTTGCACCGTTTCCGCCGAGCGATGGTTCGTCCCGGACGCGAACAGCTCAAGGGCTTGGTCGAGGTCGATCAAAGCTATCTGGCTATC
CGCGAAAATCGGGAAACTCCATCCGGCAAGCCGTCGAAAAAACGCACGACCAAGGCGTTGATCGTGATTGCCGTCGAAATCCTGGAGCCCCGTGGTTTCG
GCCGCATACGCCTGAAGCGTATTGATCGCGAGCGTGTGGCCGACGTACTTCCGTTTGTGAAGAGCGTTGTCGCCCCCGGTTCGGTGATTCGTACCGATGG
CTCGCCCATGTACTTCTCGCTGGAGCACCACTACGCACATGACCGGGTCGTGGTGACGTCTATCGCTGACGGCGAGCGTCCTCCGGCACACGTGCCGCTA
CCCGGTGTGCATCGTGTCGCCTCGCTGCTCAAACGGTGGCTGCTCGGCACGCATCAGGGAGCTGTCAAGCCTGATCAGCTTGACCATTATCTGGACGAGT
TCGTGTTTCGTTTCAACCGCCGCACTTCGCGTTCGCGCGGACTGCTCTTCTACCGGCTGCTTGAGCAAGCGCTCGCGACGGCTCCCATCACATACGACAA
CGTCGTAGTCAACAAATCACGCCGTAAAGACCATCAACCTCCACGATGTGAAATTGTGGAGCTAGATGGATAGCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa421073+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSEAQHTPVAGQDYPQTWSQFEDWFSSEYDCLRYLERLRWREGFVCPRCGCRDEPYRANRARLVCRACRLQCTVTSGTIFDKTRTPLKVWLAAAWYITSQ
KSGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGREQLKGLVEVDQSYLAIRENRETPSGKPSKKRTTKALIVIAVEILEPRGFGRIRLKRIDRERVA
DVLPFVKSVVAPGSVIRTDGSPMYFSLEHHYAHDRVVVTSIADGERPPAHVPLPGVHRVASLLKRWLLGTHQGAVKPDQLDHYLDEFVFRFNRRTSRSRG
LLFYRLLEQALATAPITYDNVVVNKSRRKDHQPPRCEIVELDG

 

Blast result :
Comments
ISPho1 is 84% aa similar to ISBusp7.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.