ISBli1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF052055 Y Brevibacterium linens
Brevibacterium linens OC2
Brevibacterium aurantiacum
DNA section
IS Length : 1435 bp

Ends


IR Length : 20/25

IRL : GGCTCTTCGCAAACGAGAGTGTATACCGATGAATTTCAAACAGAGCGAGT
IRR : GGCTCATCGTAAATAAGAGTGTAGAACCGGTCTGAAACCACCGGACTCAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGCTGCCCACTATTCGGCTGCTGTT8

DNA sequence

GGCTCTTCGCAAACGAGAGTGTATACCGATGAATTTCAAACAGAGCGAGTCGCTACCCGGATAGACGTCGAGGTCTTCCGATGATGGAAGTTCTCACACT
GCCCATCCGAAAGACCTCGACGTGGACAACCCTATATTCTCGACGCCTGACCTCACGACATTCTGCCGCCTCGACACCCTTGACCTGACATGCATCGGCC
AACACATCACCGCCCACAAAGCGGTGCTGAAATGCCGACCGAATACGGCCGATGATTGGTGCCGCCGGTGTGGCGGTCACGGCGATATCCGCGACACTGT
TCTGCGGCGGCTGGCACATGAACCCTTCGGCCACAGGCCAACGACACTGCATATTCGCCTGCGTCGCTACAAGTGCATCGAATGCGGCCACGTGTGGCGC
CAGGACACCACGGCTGCGGCACCAGCCCGGGCCAAGATCTCTCGAGCCGGACTCGATTGGGCACTGCGTGCACTCGTTGTTGATCACGACACCATGTCCG
TGATCGCGAAGAAGCTCGCGGTGTCCTGGCATACCGCGAACTCCGCGGTCCTGACCGAAGGACACCGGCTGCTGATCAACGATCCGAATCGATTCGATGG
TGTGTCTGTGATCGGCGTCGACGAGCACGTGTGGCGACACACCAGACGCGGGGACAAATATGTCACCGTCATCATTGATCTCACCCCGATCAGCCAGGGA
ACGGGACCTGCACGCCTTCTCGATATGGTGCCCGGTCGGTCGAAGCAGGTCTTCAAACAATGGTTGGCCTCACGACCGAAAGACTGGCGTGATGGCATTG
AGGTCGTTGCGATGGACGGATTCTCCGGGTTCAAAACCGCAGCCGCGGAGGAACTGCCTGATGCGGTGGAAGTCATGGACCCGTTCCACGTCGTCAAGCT
TGCTGGTGATGCCCTCGATGACGTTCGCCGCCGCGTCCAGCAGGAGACAACTGGACATCGTGGACGAGCGAAGGACCCGTTGTATCGGGCAAGGAGGACG
CTGCACACGGGCACGGACCTGCTCACAAGGCGGCAGCAAGAACGGATTGTCAGTCTCTTTGCTGATGCGAACCTCACCGAGGTCGAAGTCACCTGGGCCA
TCTATCAAGACATCGTGGCTGCTTACCGGGCTGAGGACCGTAGCGAAGGCAAGAAGCTCTTGCAGGCTGTCATCGATGTCTTGTCGGCAGGACTGCCTGC
TGGTTTGATTGAGTTGAGGCGGTTGGGAAGAACACTGAAACGCCGCGCAGCGGATGTATTGGCGTTCTTCACCAGGCCCGGAACGTCGAATGGGCCCACC
GAATCGATCAATGGTCGGCTCGAGCACCTTCGAGGATCGGCACTCGGGTTTCGTAACCTGACTCATTACATCGCGAGGTGCCTACTTGAGTCCGGTGGTT
TCAGACCGGTTCTACACTCTTATTTACGATGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1311 bp436 aa1211431+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDNPIFSTPDLTTFCRLDTLDLTCIGQHITAHKAVLKCRPNTADDWCRRCGGHGDIRDTVLRRLAHEPFGHRPTTLHIRLRRYKCIECGHVWRQDTTAAA
PARAKISRAGLDWALRALVVDHDTMSVIAKKLAVSWHTANSAVLTEGHRLLINDPNRFDGVSVIGVDEHVWRHTRRGDKYVTVIIDLTPISQGTGPARLL
DMVPGRSKQVFKQWLASRPKDWRDGIEVVAMDGFSGFKTAAAEELPDAVEVMDPFHVVKLAGDALDDVRRRVQQETTGHRGRAKDPLYRARRTLHTGTDL
LTRRQQERIVSLFADANLTEVEVTWAIYQDIVAAYRAEDRSEGKKLLQAVIDVLSAGLPAGLIELRRLGRTLKRRAADVLAFFTRPGTSNGPTESINGRL
EHLRGSALGFRNLTHYIARCLLESGGFRPVLHSYLR

 

Blast result :
Comments
ISBli1 is 79% aa similar with IS1096, 74% with IS1411, 61% with IS2001 and 55% with IS13869.
References
1] Aufrere,R., Boucabeille,C., Henckes,G. and Simonet,J.M. (1998) Direct Submission