ISBli1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF052055 | Y | Brevibacterium linens | Brevibacterium linens OC2 Brevibacterium aurantiacum |
DNA section
IS Length : 1435 bp
Ends
IR Length : 20/25
IRL : GGCTCTTCGCAAACGAGAGTGTATACCGATGAATTTCAAACAGAGCGAGT
IRR : GGCTCATCGTAAATAAGAGTGTAGAACCGGTCTGAAACCACCGGACTCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGGCTGCCC | ACTATTCG | GCTGCTGTT | 8 |
DNA sequence
GGCTCTTCGCAAACGAGAGTGTATACCGATGAATTTCAAACAGAGCGAGTCGCTACCCGGATAGACGTCGAGGTCTTCCGATGATGGAAGTTCTCACACT
GCCCATCCGAAAGACCTCGACGTGGACAACCCTATATTCTCGACGCCTGACCTCACGACATTCTGCCGCCTCGACACCCTTGACCTGACATGCATCGGCC
AACACATCACCGCCCACAAAGCGGTGCTGAAATGCCGACCGAATACGGCCGATGATTGGTGCCGCCGGTGTGGCGGTCACGGCGATATCCGCGACACTGT
TCTGCGGCGGCTGGCACATGAACCCTTCGGCCACAGGCCAACGACACTGCATATTCGCCTGCGTCGCTACAAGTGCATCGAATGCGGCCACGTGTGGCGC
CAGGACACCACGGCTGCGGCACCAGCCCGGGCCAAGATCTCTCGAGCCGGACTCGATTGGGCACTGCGTGCACTCGTTGTTGATCACGACACCATGTCCG
TGATCGCGAAGAAGCTCGCGGTGTCCTGGCATACCGCGAACTCCGCGGTCCTGACCGAAGGACACCGGCTGCTGATCAACGATCCGAATCGATTCGATGG
TGTGTCTGTGATCGGCGTCGACGAGCACGTGTGGCGACACACCAGACGCGGGGACAAATATGTCACCGTCATCATTGATCTCACCCCGATCAGCCAGGGA
ACGGGACCTGCACGCCTTCTCGATATGGTGCCCGGTCGGTCGAAGCAGGTCTTCAAACAATGGTTGGCCTCACGACCGAAAGACTGGCGTGATGGCATTG
AGGTCGTTGCGATGGACGGATTCTCCGGGTTCAAAACCGCAGCCGCGGAGGAACTGCCTGATGCGGTGGAAGTCATGGACCCGTTCCACGTCGTCAAGCT
TGCTGGTGATGCCCTCGATGACGTTCGCCGCCGCGTCCAGCAGGAGACAACTGGACATCGTGGACGAGCGAAGGACCCGTTGTATCGGGCAAGGAGGACG
CTGCACACGGGCACGGACCTGCTCACAAGGCGGCAGCAAGAACGGATTGTCAGTCTCTTTGCTGATGCGAACCTCACCGAGGTCGAAGTCACCTGGGCCA
TCTATCAAGACATCGTGGCTGCTTACCGGGCTGAGGACCGTAGCGAAGGCAAGAAGCTCTTGCAGGCTGTCATCGATGTCTTGTCGGCAGGACTGCCTGC
TGGTTTGATTGAGTTGAGGCGGTTGGGAAGAACACTGAAACGCCGCGCAGCGGATGTATTGGCGTTCTTCACCAGGCCCGGAACGTCGAATGGGCCCACC
GAATCGATCAATGGTCGGCTCGAGCACCTTCGAGGATCGGCACTCGGGTTTCGTAACCTGACTCATTACATCGCGAGGTGCCTACTTGAGTCCGGTGGTT
TCAGACCGGTTCTACACTCTTATTTACGATGAGCC
GCCCATCCGAAAGACCTCGACGTGGACAACCCTATATTCTCGACGCCTGACCTCACGACATTCTGCCGCCTCGACACCCTTGACCTGACATGCATCGGCC
AACACATCACCGCCCACAAAGCGGTGCTGAAATGCCGACCGAATACGGCCGATGATTGGTGCCGCCGGTGTGGCGGTCACGGCGATATCCGCGACACTGT
TCTGCGGCGGCTGGCACATGAACCCTTCGGCCACAGGCCAACGACACTGCATATTCGCCTGCGTCGCTACAAGTGCATCGAATGCGGCCACGTGTGGCGC
CAGGACACCACGGCTGCGGCACCAGCCCGGGCCAAGATCTCTCGAGCCGGACTCGATTGGGCACTGCGTGCACTCGTTGTTGATCACGACACCATGTCCG
TGATCGCGAAGAAGCTCGCGGTGTCCTGGCATACCGCGAACTCCGCGGTCCTGACCGAAGGACACCGGCTGCTGATCAACGATCCGAATCGATTCGATGG
TGTGTCTGTGATCGGCGTCGACGAGCACGTGTGGCGACACACCAGACGCGGGGACAAATATGTCACCGTCATCATTGATCTCACCCCGATCAGCCAGGGA
ACGGGACCTGCACGCCTTCTCGATATGGTGCCCGGTCGGTCGAAGCAGGTCTTCAAACAATGGTTGGCCTCACGACCGAAAGACTGGCGTGATGGCATTG
AGGTCGTTGCGATGGACGGATTCTCCGGGTTCAAAACCGCAGCCGCGGAGGAACTGCCTGATGCGGTGGAAGTCATGGACCCGTTCCACGTCGTCAAGCT
TGCTGGTGATGCCCTCGATGACGTTCGCCGCCGCGTCCAGCAGGAGACAACTGGACATCGTGGACGAGCGAAGGACCCGTTGTATCGGGCAAGGAGGACG
CTGCACACGGGCACGGACCTGCTCACAAGGCGGCAGCAAGAACGGATTGTCAGTCTCTTTGCTGATGCGAACCTCACCGAGGTCGAAGTCACCTGGGCCA
TCTATCAAGACATCGTGGCTGCTTACCGGGCTGAGGACCGTAGCGAAGGCAAGAAGCTCTTGCAGGCTGTCATCGATGTCTTGTCGGCAGGACTGCCTGC
TGGTTTGATTGAGTTGAGGCGGTTGGGAAGAACACTGAAACGCCGCGCAGCGGATGTATTGGCGTTCTTCACCAGGCCCGGAACGTCGAATGGGCCCACC
GAATCGATCAATGGTCGGCTCGAGCACCTTCGAGGATCGGCACTCGGGTTTCGTAACCTGACTCATTACATCGCGAGGTGCCTACTTGAGTCCGGTGGTT
TCAGACCGGTTCTACACTCTTATTTACGATGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1311 bp | 436 aa | 121 | 1431 | + | No |
Chemistry : Unknow
ORF sequence :
MDNPIFSTPDLTTFCRLDTLDLTCIGQHITAHKAVLKCRPNTADDWCRRCGGHGDIRDTVLRRLAHEPFGHRPTTLHIRLRRYKCIECGHVWRQDTTAAA
PARAKISRAGLDWALRALVVDHDTMSVIAKKLAVSWHTANSAVLTEGHRLLINDPNRFDGVSVIGVDEHVWRHTRRGDKYVTVIIDLTPISQGTGPARLL
DMVPGRSKQVFKQWLASRPKDWRDGIEVVAMDGFSGFKTAAAEELPDAVEVMDPFHVVKLAGDALDDVRRRVQQETTGHRGRAKDPLYRARRTLHTGTDL
LTRRQQERIVSLFADANLTEVEVTWAIYQDIVAAYRAEDRSEGKKLLQAVIDVLSAGLPAGLIELRRLGRTLKRRAADVLAFFTRPGTSNGPTESINGRL
EHLRGSALGFRNLTHYIARCLLESGGFRPVLHSYLR
PARAKISRAGLDWALRALVVDHDTMSVIAKKLAVSWHTANSAVLTEGHRLLINDPNRFDGVSVIGVDEHVWRHTRRGDKYVTVIIDLTPISQGTGPARLL
DMVPGRSKQVFKQWLASRPKDWRDGIEVVAMDGFSGFKTAAAEELPDAVEVMDPFHVVKLAGDALDDVRRRVQQETTGHRGRAKDPLYRARRTLHTGTDL
LTRRQQERIVSLFADANLTEVEVTWAIYQDIVAAYRAEDRSEGKKLLQAVIDVLSAGLPAGLIELRRLGRTLKRRAADVLAFFTRPGTSNGPTESINGRL
EHLRGSALGFRNLTHYIARCLLESGGFRPVLHSYLR
Blast result :
Comments
ISBli1 is 79% aa similar with IS1096, 74% with IS1411, 61% with IS2001 and 55% with IS13869.
References
1] Aufrere,R., Boucabeille,C., Henckes,G. and Simonet,J.M. (1998) Direct Submission