ISShsp4
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP018221 | ND | Sphingomonas sp. | Sphingomonas sp. JJ-A5 Sphingomonas sp. JJ-A5 plasmid pHSL4 Sphingomonas sp. JJ-A5 plasmid pHSL3 Sphingomonas sp. JJ-A5 plasmid pHSL1 |
DNA section
IS Length : 1150 bp
Ends
IR Length : 32/35
IRL : CGTGCCTATCCGCTTGACGCATACACCCACTACATCTAGTGGCTGCCTTG
IRR : CGTGCCTATCCGCTTAAGGCATACACCCACTAGATATGGTATGGTGGGTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACTGGAGTGG | AAACGAAG | ATCGAAGGGT | 8 |
| ACGGCGAGCATA | ATTCGATC | CTCGACAACTGC | 8 |
| TGGAGAGGCGTG | CAATGTTC | GAGTTTCGCATA | 8 |
| CAATACTTCATT | GTCCATAT | TTTACGTTTTTG | 8 |
| ATACACCCACTACATCTAGT | GTTGATTCTTCCAATATCTA | 0 | |
| CGGCAGGACGGG | GGTCGTTC | GATGCTGGACGG | 8 |
DNA sequence
CGTGCCTATCCGCTTGACGCATACACCCACTACATCTAGTGGCTGCCTTGTGGCGCGCGCCTGACTTTTCCTGCGGCTTGGTGCCACCCAAAGCGGTTGT
AAAGGGTGGGGATTGTGGACGTTCTTGACCGCGACAAGCTGCCGTTCCCGAAATCCCTCCCCGAGTTCCAGCGGCTTTTCCCGGATGATGGCGCTTGCGC
GTCCTGGCTTGAAAAAGCTCGCTGGCCTGATGGATTTGCGTGCCCACGCTGTGGCGTCGTCGGCGATCCGTTTCGTTTCACCACTCGGCCTGTCATCCTG
ATGTGCCGCTCGTGTCGCCGTCAGACCGGCCTGATGGTCGGCACGGCCATGGAACGAAGCCACATCCCGCTCAGCGTGTGGTTCTGGGCCGCTTACCTGG
TTGCGAGTCAGACGACCGGCATATCTGCCGTCCAGTTGCAGCGCCAGCTTGGCCTGACCCGGTACGAGACGGCCTTTGGCCTGCTCCATAAACTGCGCGC
CGCGATGGTGCGCCCCGATCAGGATCGGATCGGCGGGCAGAGCGGTCAGCATGTCGAGGTCGATGAGACCTGGATCGGCGGGCGAACGCGCGGCGAAGGC
CGGGGAACCCACCACAAAACGCTGGTGGTCGCCGCCGTCGAAGTTCGTCACCGGGAGCCTGGCACTGGCCAGGACCGCCGCCGGAACGGACGCTATGCCG
GAAGGGTTCGATTGGCCATCGGTGCAGACCGCAGTGCCGGTGCCCTTGGTGGCTTTGTACAGAGCGCGGTCGAGCCGGGAACGCTGGTCATCACCGATGA
TTGGAGCGGCTATAGCGGGTTGCAGGGCGGCGGTTACGACCATCACGCCATCGCCCAGTGTGGCGACCCGGAGGTGTCCGAAGAGTTCCTGCCCATCGTC
CATCTGGTGTTCTCAAACCTCAAAGCGTGGCTCAACGGCATCCACCACGGCGTCAGCACCAAGCATCTGCAAGCCTACCTCAACGAGTTCACTTTCCGCT
TCAATCGCCGCTTCTACCCGTTCAACGCCTTCCGATCCCTCCTCGGGATCGCCAGTGATATCGAGGCGCCGACCTTTGCCGAACTCTACTCAGGCCAATG
GACCCACCATACCATATCTAGTGGGTGTATGCCTTAAGCGGATAGGCACG
AAAGGGTGGGGATTGTGGACGTTCTTGACCGCGACAAGCTGCCGTTCCCGAAATCCCTCCCCGAGTTCCAGCGGCTTTTCCCGGATGATGGCGCTTGCGC
GTCCTGGCTTGAAAAAGCTCGCTGGCCTGATGGATTTGCGTGCCCACGCTGTGGCGTCGTCGGCGATCCGTTTCGTTTCACCACTCGGCCTGTCATCCTG
ATGTGCCGCTCGTGTCGCCGTCAGACCGGCCTGATGGTCGGCACGGCCATGGAACGAAGCCACATCCCGCTCAGCGTGTGGTTCTGGGCCGCTTACCTGG
TTGCGAGTCAGACGACCGGCATATCTGCCGTCCAGTTGCAGCGCCAGCTTGGCCTGACCCGGTACGAGACGGCCTTTGGCCTGCTCCATAAACTGCGCGC
CGCGATGGTGCGCCCCGATCAGGATCGGATCGGCGGGCAGAGCGGTCAGCATGTCGAGGTCGATGAGACCTGGATCGGCGGGCGAACGCGCGGCGAAGGC
CGGGGAACCCACCACAAAACGCTGGTGGTCGCCGCCGTCGAAGTTCGTCACCGGGAGCCTGGCACTGGCCAGGACCGCCGCCGGAACGGACGCTATGCCG
GAAGGGTTCGATTGGCCATCGGTGCAGACCGCAGTGCCGGTGCCCTTGGTGGCTTTGTACAGAGCGCGGTCGAGCCGGGAACGCTGGTCATCACCGATGA
TTGGAGCGGCTATAGCGGGTTGCAGGGCGGCGGTTACGACCATCACGCCATCGCCCAGTGTGGCGACCCGGAGGTGTCCGAAGAGTTCCTGCCCATCGTC
CATCTGGTGTTCTCAAACCTCAAAGCGTGGCTCAACGGCATCCACCACGGCGTCAGCACCAAGCATCTGCAAGCCTACCTCAACGAGTTCACTTTCCGCT
TCAATCGCCGCTTCTACCCGTTCAACGCCTTCCGATCCCTCCTCGGGATCGCCAGTGATATCGAGGCGCCGACCTTTGCCGAACTCTACTCAGGCCAATG
GACCCACCATACCATATCTAGTGGGTGTATGCCTTAAGCGGATAGGCACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1023 bp | 340 aa | 115 | 1137 | + | No |
Chemistry : DDE
ORF sequence :
MDVLDRDKLPFPKSLPEFQRLFPDDGACASWLEKARWPDGFACPRCGVVGDPFRFTTRPVILMCRSCRRQTGLMVGTAMERSHIPLSVWFWAAYLVASQT
TGISAVQLQRQLGLTRYETAFGLLHKLRAAMVRPDQDRIGGQSGQHVEVDETWIGGRTRGEGRGTHHKTLVVAAVEVRHREPGTGQDRRRNGRYAGRVRL
AIGADRSAGALGGFVQSAVEPGTLVITDDWSGYSGLQGGGYDHHAIAQCGDPEVSEEFLPIVHLVFSNLKAWLNGIHHGVSTKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIASDIEAPTFAELYSGQWTHHTISSGCMP
TGISAVQLQRQLGLTRYETAFGLLHKLRAAMVRPDQDRIGGQSGQHVEVDETWIGGRTRGEGRGTHHKTLVVAAVEVRHREPGTGQDRRRNGRYAGRVRL
AIGADRSAGALGGFVQSAVEPGTLVITDDWSGYSGLQGGGYDHHAIAQCGDPEVSEEFLPIVHLVFSNLKAWLNGIHHGVSTKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIASDIEAPTFAELYSGQWTHHTISSGCMP
Blast result :
Comments
ISShsp4 is 87% aa similar to ISMmg5.
References
1] ISfinder annotation (2017)
2] Lee,H. and Ka,J.-O. (2016) Direct Genbank submission.
2] Lee,H. and Ka,J.-O. (2016) Direct Genbank submission.